Wall clock time and date at job start Mon Mar 30 2020 03:47:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46500 * 109.46880 * 2 1 4 4 C 1.34772 * 120.00220 * 269.99630 * 3 2 1 5 5 O 1.21284 * 120.00478 * 185.01166 * 4 3 2 6 6 C 1.50709 * 119.99915 * 5.01401 * 4 3 2 7 7 N 1.46898 * 109.47123 * 179.97438 * 6 4 3 8 8 C 1.46900 * 110.99603 * 66.04928 * 7 6 4 9 9 C 1.46898 * 110.99780 * 189.99886 * 7 6 4 10 10 C 1.50702 * 109.47230 * 170.00195 * 9 7 6 11 11 H 1.07999 * 119.99617 * 0.02562 * 10 9 7 12 12 C 1.37870 * 120.00532 * 179.97438 * 10 9 7 13 13 N 1.31522 * 119.99494 * 0.02562 * 12 10 9 14 14 Si 1.86794 * 120.00495 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47132 * 0.02562 * 14 12 10 16 16 H 1.48499 * 109.47239 * 120.00013 * 14 12 10 17 17 H 1.48498 * 109.47361 * 240.00313 * 14 12 10 18 18 C 1.46506 * 120.00318 * 90.00047 * 3 2 1 19 19 C 1.52998 * 117.49587 * 2.81536 * 18 3 2 20 20 C 1.52997 * 117.49632 * 294.16027 * 18 3 2 21 21 H 1.08997 * 109.46857 * 300.00297 * 1 2 3 22 22 H 1.08999 * 109.46813 * 60.00144 * 1 2 3 23 23 H 1.08996 * 109.46943 * 179.97438 * 1 2 3 24 24 H 1.08992 * 109.47458 * 240.00055 * 2 1 3 25 25 H 1.08999 * 109.46813 * 119.99856 * 2 1 3 26 26 H 1.08994 * 109.47042 * 300.00486 * 6 4 3 27 27 H 1.09007 * 109.46648 * 59.99775 * 6 4 3 28 28 H 1.09002 * 109.47490 * 59.99922 * 8 7 6 29 29 H 1.08999 * 109.47017 * 179.97438 * 8 7 6 30 30 H 1.08997 * 109.47646 * 299.99755 * 8 7 6 31 31 H 1.09000 * 109.47184 * 290.00303 * 9 7 6 32 32 H 1.08998 * 109.47188 * 50.00492 * 9 7 6 33 33 H 0.97003 * 119.99720 * 179.97438 * 13 12 10 34 34 H 1.08995 * 115.55060 * 148.48960 * 18 3 2 35 35 H 1.09006 * 117.49983 * 0.02562 * 19 18 3 36 36 H 1.09005 * 117.50279 * 145.02029 * 19 18 3 37 37 H 1.09003 * 117.50079 * 214.97819 * 20 18 3 38 38 H 1.09007 * 117.49969 * 359.97335 * 20 18 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2430 2.0166 -1.1671 5 8 2.7326 3.1262 -1.1692 6 6 1.8859 1.3482 -2.4698 7 7 2.2253 2.2398 -3.5868 8 6 3.6782 2.4355 -3.6813 9 6 1.6795 1.7302 -4.8518 10 6 1.8309 2.7791 -5.9232 11 1 2.2875 3.7292 -5.6880 12 6 1.3877 2.5256 -7.2039 13 7 0.8322 1.3684 -7.4904 14 14 1.5761 3.8255 -8.5320 15 1 2.2279 5.0297 -7.9572 16 1 2.4135 3.2889 -9.6347 17 1 0.2372 4.1914 -9.0601 18 6 2.2625 2.0719 1.2687 19 6 2.0519 1.2760 2.5583 20 6 1.0525 2.3641 2.1582 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 1.8934 -0.5138 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 2.4439 0.4168 -2.5653 27 1 0.8170 1.1348 -2.4876 28 1 4.1648 1.4734 -3.8417 29 1 3.9019 3.0991 -4.5166 30 1 4.0461 2.8789 -2.7560 31 1 2.2208 0.8306 -5.1449 32 1 0.6235 1.4928 -4.7225 33 1 0.5200 1.1902 -8.3913 34 1 3.0674 2.8068 1.2566 35 1 1.7320 0.2383 2.4627 36 1 2.7180 1.4874 3.3948 37 1 1.0614 3.2911 2.7317 38 1 0.0746 2.0429 1.7993 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049302803.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:13 Heat of formation + Delta-G solvation = -16.023100 kcal Electronic energy + Delta-G solvation = -17652.984568 eV Core-core repulsion = 14917.068496 eV Total energy + Delta-G solvation = -2735.916072 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.25124 -38.75913 -37.43931 -35.33811 -34.60120 -31.26139 -30.02481 -28.73195 -26.20604 -24.67646 -23.53438 -22.98763 -21.96664 -19.98554 -18.68822 -18.34989 -17.35585 -16.89286 -16.44381 -16.04572 -15.52283 -15.28088 -15.20410 -14.69182 -14.25620 -14.04980 -13.86016 -13.62807 -13.30576 -12.87069 -12.76451 -12.60577 -12.58650 -12.41430 -12.34560 -12.02440 -11.83962 -11.65218 -11.43296 -11.42087 -10.67784 -10.60974 -9.48514 -9.03140 -8.21836 -6.30880 1.40562 1.41313 1.55385 1.56554 1.83942 2.41045 2.91444 3.10718 3.31928 3.60656 3.79751 3.98952 4.04764 4.06834 4.18850 4.32762 4.40119 4.49523 4.55583 4.65459 4.71237 4.82514 4.88019 4.97454 5.07902 5.10868 5.13334 5.22681 5.25275 5.39847 5.62728 5.67670 5.99889 6.26223 6.29954 6.58286 6.83619 7.22247 7.38448 8.89389 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.043957 B = 0.004966 C = 0.004713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.840014 B = 5637.087001 C = 5939.474845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.093 3.907 3 N -0.585 5.585 4 C 0.520 3.480 5 O -0.561 6.561 6 C 0.041 3.959 7 N -0.543 5.543 8 C 0.043 3.957 9 C 0.209 3.791 10 C -0.527 4.527 11 H 0.056 0.944 12 C 0.006 3.994 13 N -0.930 5.930 14 Si 0.968 3.032 15 H -0.269 1.269 16 H -0.275 1.275 17 H -0.276 1.276 18 C 0.049 3.951 19 C -0.153 4.153 20 C -0.194 4.194 21 H 0.065 0.935 22 H 0.040 0.960 23 H 0.090 0.910 24 H 0.083 0.917 25 H 0.111 0.889 26 H 0.069 0.931 27 H 0.104 0.896 28 H 0.014 0.986 29 H 0.055 0.945 30 H 0.071 0.929 31 H -0.027 1.027 32 H 0.012 0.988 33 H 0.266 0.734 34 H 0.109 0.891 35 H 0.117 0.883 36 H 0.120 0.880 37 H 0.105 0.895 38 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.664 -5.674 19.557 20.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.029 4.029 3 N -0.318 5.318 4 C 0.309 3.691 5 O -0.438 6.438 6 C -0.090 4.090 7 N -0.268 5.268 8 C -0.105 4.105 9 C 0.084 3.916 10 C -0.565 4.565 11 H 0.074 0.926 12 C -0.192 4.192 13 N -0.571 5.571 14 Si 0.793 3.207 15 H -0.194 1.194 16 H -0.200 1.200 17 H -0.201 1.201 18 C -0.055 4.055 19 C -0.191 4.191 20 C -0.233 4.233 21 H 0.084 0.916 22 H 0.059 0.941 23 H 0.109 0.891 24 H 0.102 0.898 25 H 0.129 0.871 26 H 0.087 0.913 27 H 0.122 0.878 28 H 0.033 0.967 29 H 0.074 0.926 30 H 0.089 0.911 31 H -0.010 1.010 32 H 0.030 0.970 33 H 0.075 0.925 34 H 0.127 0.873 35 H 0.135 0.865 36 H 0.138 0.862 37 H 0.123 0.877 38 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 0.639 -4.741 19.493 20.071 hybrid contribution 0.238 -0.195 -1.195 1.234 sum 0.878 -4.936 18.297 18.972 Atomic orbital electron populations 1.22322 0.95091 1.03683 1.02126 1.21935 0.95243 0.80723 1.04987 1.47507 1.65549 1.14755 1.03958 1.20760 0.77216 0.85531 0.85633 1.90608 1.44305 1.21458 1.87466 1.22053 1.02940 0.94690 0.89289 1.61698 1.13375 1.47496 1.04216 1.22236 0.87151 0.99156 1.01954 1.19441 0.93579 0.93286 0.85325 1.21459 1.39403 1.01275 0.94392 0.92603 1.25832 0.94681 0.97857 1.00823 1.70067 1.41544 1.24167 1.21304 0.85354 0.78074 0.78921 0.78397 1.19364 1.20038 1.20112 1.21651 1.01143 1.01296 0.81388 1.23463 1.01961 0.97970 0.95657 1.23524 0.95158 1.01384 1.03197 0.91600 0.94055 0.89121 0.89848 0.87133 0.91291 0.87832 0.96714 0.92589 0.91085 1.00956 0.96968 0.92531 0.87327 0.86453 0.86174 0.87703 0.88423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.88 10.19 71.98 0.73 -2.15 16 2 C 0.09 1.64 5.44 86.38 0.47 2.11 16 3 N -0.59 -15.00 2.80 -797.83 -2.23 -17.23 16 4 C 0.52 18.42 7.39 87.66 0.65 19.07 16 5 O -0.56 -24.39 14.08 -3.04 -0.04 -24.44 16 6 C 0.04 1.54 4.12 85.56 0.35 1.89 16 7 N -0.54 -25.85 4.49 -931.64 -4.18 -30.04 16 8 C 0.04 1.93 9.03 127.69 1.15 3.09 16 9 C 0.21 11.46 4.72 85.56 0.40 11.86 16 10 C -0.53 -31.12 8.46 25.60 0.22 -30.91 16 11 H 0.06 3.34 7.12 -2.91 -0.02 3.32 16 12 C 0.01 0.37 5.46 84.65 0.46 0.83 16 13 N -0.93 -55.93 13.29 21.45 0.28 -55.64 16 14 Si 0.97 45.42 29.54 68.60 2.03 47.44 16 15 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 16 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 17 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 18 C 0.05 1.11 6.15 44.99 0.28 1.38 16 19 C -0.15 -2.04 9.74 30.62 0.30 -1.75 16 20 C -0.19 -3.42 10.19 30.62 0.31 -3.11 16 21 H 0.07 1.01 5.89 -2.39 -0.01 1.00 16 22 H 0.04 0.88 6.94 -2.39 -0.02 0.87 16 23 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 24 H 0.08 1.49 6.48 -2.39 -0.02 1.48 16 25 H 0.11 1.31 5.99 -2.39 -0.01 1.30 16 26 H 0.07 2.29 7.23 -2.39 -0.02 2.27 16 27 H 0.10 3.66 6.73 -2.38 -0.02 3.64 16 28 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.06 2.66 6.76 -2.39 -0.02 2.65 16 30 H 0.07 3.08 5.88 -2.39 -0.01 3.07 16 31 H -0.03 -1.56 8.12 -2.39 -0.02 -1.58 16 32 H 0.01 0.70 7.93 -2.39 -0.02 0.68 16 33 H 0.27 14.91 8.31 -92.71 -0.77 14.14 16 34 H 0.11 2.86 7.75 -2.39 -0.02 2.84 16 35 H 0.12 1.18 6.11 -2.38 -0.01 1.17 16 36 H 0.12 1.20 8.14 -2.38 -0.02 1.19 16 37 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.10 1.75 6.11 -2.38 -0.01 1.74 16 Total: -1.00 -71.93 302.33 2.22 -69.71 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: 1.04 Total: 7.88 kcal Atomic # 6 Polarization: -3.01 SS G_CDS: 5.33 Total: 2.31 kcal Atomic # 7 Polarization: -96.78 SS G_CDS: -6.13 Total: -102.91 kcal Atomic # 8 Polarization: -24.39 SS G_CDS: -0.04 Total: -24.44 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.44 kcal Total: -71.93 2.22 -69.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049302803.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.686 kcal (2) G-P(sol) polarization free energy of solvation -71.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds