Wall clock time and date at job start Mon Mar 30 2020 04:07:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46505 * 109.47361 * 2 1 4 4 C 1.34773 * 119.99952 * 179.97438 * 3 2 1 5 5 O 1.21284 * 119.99956 * 359.97438 * 4 3 2 6 6 C 1.50698 * 119.99815 * 179.97438 * 4 3 2 7 7 H 1.08994 * 109.50435 * 300.07998 * 6 4 3 8 8 C 1.53117 * 109.50346 * 60.19620 * 6 4 3 9 9 C 1.53121 * 109.16405 * 177.59305 * 8 6 4 10 10 C 1.53042 * 109.27764 * 302.34857 * 9 8 6 11 11 N 1.46844 * 109.52315 * 59.17560 * 10 9 8 12 12 C 1.46903 * 110.99866 * 174.16044 * 11 10 9 13 13 C 1.50694 * 109.47066 * 294.21034 * 12 11 10 14 14 H 1.08000 * 120.00563 * 359.97438 * 13 12 11 15 15 C 1.37885 * 119.99902 * 180.02562 * 13 12 11 16 16 N 1.31516 * 119.99913 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99766 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47353 * 269.99586 * 17 15 13 19 19 H 1.48501 * 109.47293 * 30.00037 * 17 15 13 20 20 H 1.48504 * 109.46680 * 149.99835 * 17 15 13 21 21 C 1.46847 * 111.20014 * 298.25680 * 11 10 9 22 22 H 1.09006 * 109.46753 * 59.99915 * 1 2 3 23 23 H 1.08994 * 109.47321 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47142 * 300.00324 * 1 2 3 25 25 H 1.09001 * 109.47142 * 239.99676 * 2 1 3 26 26 H 1.09000 * 109.46749 * 119.99641 * 2 1 3 27 27 H 0.96996 * 119.99437 * 359.97438 * 3 2 1 28 28 H 1.08994 * 109.52189 * 297.50200 * 8 6 4 29 29 H 1.09006 * 109.52176 * 57.62896 * 8 6 4 30 30 H 1.09000 * 109.49853 * 62.28301 * 9 8 6 31 31 H 1.08995 * 109.50736 * 182.36914 * 9 8 6 32 32 H 1.08998 * 109.46291 * 299.15982 * 10 9 8 33 33 H 1.08995 * 109.46120 * 179.19113 * 10 9 8 34 34 H 1.09007 * 109.47052 * 174.20719 * 12 11 10 35 35 H 1.09003 * 109.46808 * 54.21411 * 12 11 10 36 36 H 0.97001 * 119.99646 * 179.97438 * 16 15 13 37 37 H 1.08996 * 109.46678 * 181.75844 * 21 11 10 38 38 H 1.08998 * 109.46335 * 301.73006 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 3.3434 1.6274 0.0005 5 8 4.1315 0.7055 0.0015 6 6 3.8458 3.0482 -0.0001 7 1 3.4820 3.5625 -0.8896 8 6 3.3392 3.7701 1.2517 9 6 3.9030 5.1935 1.2738 10 6 5.4317 5.1322 1.2376 11 7 5.8661 4.4332 0.0215 12 6 7.3280 4.4763 -0.1167 13 6 7.7700 5.9000 -0.3376 14 1 7.0381 6.6934 -0.3723 15 6 9.1087 6.1895 -0.4964 16 7 9.9999 5.2232 -0.4546 17 14 9.6564 7.9541 -0.7709 18 1 9.6756 8.2457 -2.2269 19 1 8.7105 8.8771 -0.0937 20 1 11.0186 8.1424 -0.2104 21 6 5.3762 3.0491 0.0008 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.8933 -0.5139 -0.8900 26 1 1.8932 -0.5138 0.8900 27 1 1.3880 2.1185 -0.0004 28 1 2.2501 3.8098 1.2336 29 1 3.6694 3.2327 2.1407 30 1 3.5402 5.7421 0.4046 31 1 3.5800 5.6988 2.1839 32 1 5.7945 4.5954 2.1142 33 1 5.8359 6.1444 1.2388 34 1 7.6307 3.8657 -0.9674 35 1 7.7903 4.0890 0.7913 36 1 10.9416 5.4269 -0.5667 37 1 5.7400 2.5483 -0.8964 38 1 5.7391 2.5221 0.8831 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049754169.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:07:59 Heat of formation + Delta-G solvation = -77.481257 kcal Electronic energy + Delta-G solvation = -17512.197154 eV Core-core repulsion = 14773.616056 eV Total energy + Delta-G solvation = -2738.581098 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.25292 -39.20655 -36.31723 -35.51725 -33.86265 -32.21068 -31.03970 -28.98184 -25.75106 -25.13887 -23.35334 -23.17720 -21.58398 -20.55622 -18.49618 -18.10215 -17.23220 -16.73228 -16.51657 -16.02170 -15.71902 -15.24858 -15.15173 -14.89378 -14.32167 -14.17355 -13.83235 -13.60232 -13.30578 -13.05993 -12.71223 -12.66355 -12.52679 -12.41781 -12.34362 -12.12340 -11.79122 -11.72294 -11.35678 -11.14551 -10.72237 -10.61514 -10.10350 -9.08220 -8.20908 -6.32487 1.41613 1.44420 1.55389 1.58988 2.16256 2.41206 3.11140 3.29036 3.63548 3.81944 3.96474 4.13962 4.23860 4.28210 4.31255 4.38071 4.54032 4.64546 4.75838 4.81524 4.87914 4.96794 5.02964 5.07185 5.08907 5.15787 5.20328 5.28509 5.31058 5.46372 5.49557 5.64217 6.02210 6.31523 6.54309 6.58595 6.84069 7.24684 7.37536 8.91066 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.049958 B = 0.004712 C = 0.004443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.333304 B = 5940.795557 C = 6300.109194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.108 3.892 3 N -0.713 5.713 4 C 0.519 3.481 5 O -0.590 6.590 6 C -0.093 4.093 7 H 0.122 0.878 8 C -0.100 4.100 9 C -0.104 4.104 10 C 0.055 3.945 11 N -0.535 5.535 12 C 0.206 3.794 13 C -0.521 4.521 14 H 0.071 0.929 15 C -0.004 4.004 16 N -0.939 5.939 17 Si 0.977 3.023 18 H -0.272 1.272 19 H -0.258 1.258 20 H -0.284 1.284 21 C 0.079 3.921 22 H 0.071 0.929 23 H 0.083 0.917 24 H 0.073 0.927 25 H 0.052 0.948 26 H 0.053 0.947 27 H 0.418 0.582 28 H 0.111 0.889 29 H 0.052 0.948 30 H 0.081 0.919 31 H 0.093 0.907 32 H 0.005 0.995 33 H 0.067 0.933 34 H -0.003 1.003 35 H -0.045 1.045 36 H 0.264 0.736 37 H 0.048 0.952 38 H 0.005 0.995 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.429 -3.593 2.830 22.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.016 4.016 3 N -0.366 5.366 4 C 0.306 3.694 5 O -0.471 6.471 6 C -0.114 4.114 7 H 0.140 0.860 8 C -0.137 4.137 9 C -0.142 4.142 10 C -0.073 4.073 11 N -0.259 5.259 12 C 0.080 3.920 13 C -0.559 4.559 14 H 0.089 0.911 15 C -0.201 4.201 16 N -0.580 5.580 17 Si 0.801 3.199 18 H -0.198 1.198 19 H -0.182 1.182 20 H -0.209 1.209 21 C -0.050 4.050 22 H 0.091 0.909 23 H 0.102 0.898 24 H 0.092 0.908 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.256 0.744 28 H 0.129 0.871 29 H 0.071 0.929 30 H 0.099 0.901 31 H 0.112 0.888 32 H 0.024 0.976 33 H 0.086 0.914 34 H 0.015 0.985 35 H -0.027 1.027 36 H 0.073 0.927 37 H 0.067 0.933 38 H 0.024 0.976 Dipole moment (debyes) X Y Z Total from point charges -21.930 -4.059 2.425 22.434 hybrid contribution 1.449 0.083 0.438 1.516 sum -20.482 -3.975 2.863 21.059 Atomic orbital electron populations 1.21945 0.91320 1.04235 1.03551 1.21408 0.96582 0.82375 1.01214 1.45927 1.06055 1.10001 1.74641 1.20851 0.82899 0.91107 0.74568 1.90689 1.56985 1.47926 1.51468 1.21273 0.94620 0.92321 1.03229 0.86027 1.21568 1.02181 0.95380 0.94593 1.21585 0.92113 0.96680 1.03793 1.22111 0.97325 0.98772 0.89068 1.61991 1.12599 1.13296 1.38047 1.19377 0.82920 0.96865 0.92877 1.21454 0.92444 0.93287 1.48756 0.91108 1.26051 0.96679 1.02509 0.94906 1.70128 1.02020 1.34497 1.51317 0.85269 0.77440 0.78589 0.78617 1.19765 1.18230 1.20949 1.21679 0.94830 0.89509 0.99009 0.90950 0.89813 0.90797 0.92936 0.92831 0.74406 0.87095 0.92885 0.90055 0.88808 0.97649 0.91427 0.98531 1.02733 0.92691 0.93347 0.97647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 10.03 71.98 0.72 -0.60 16 2 C 0.11 1.85 6.39 86.38 0.55 2.40 16 3 N -0.71 -13.37 5.46 -463.06 -2.53 -15.89 16 4 C 0.52 15.09 7.15 87.66 0.63 15.71 16 5 O -0.59 -23.39 15.98 -3.04 -0.05 -23.44 16 6 C -0.09 -2.67 2.69 -11.49 -0.03 -2.71 16 7 H 0.12 3.11 8.14 -2.39 -0.02 3.09 16 8 C -0.10 -2.23 5.16 30.67 0.16 -2.08 16 9 C -0.10 -2.67 6.09 30.65 0.19 -2.48 16 10 C 0.06 2.15 5.30 86.33 0.46 2.61 16 11 N -0.53 -24.46 4.65 -900.92 -4.19 -28.65 16 12 C 0.21 11.83 4.72 85.55 0.40 12.23 16 13 C -0.52 -30.44 8.43 25.60 0.22 -30.22 16 14 H 0.07 3.95 7.12 -2.91 -0.02 3.93 16 15 C 0.00 -0.23 5.46 84.66 0.46 0.24 16 16 N -0.94 -58.91 13.29 21.45 0.28 -58.62 16 17 Si 0.98 44.92 29.54 68.60 2.03 46.95 16 18 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 19 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 20 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 21 C 0.08 3.27 4.03 86.33 0.35 3.62 16 22 H 0.07 0.51 8.14 -2.38 -0.02 0.50 16 23 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 24 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 25 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 26 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.42 4.70 7.95 -92.71 -0.74 3.96 16 28 H 0.11 1.47 7.66 -2.39 -0.02 1.45 16 29 H 0.05 1.32 8.14 -2.38 -0.02 1.30 16 30 H 0.08 1.97 8.14 -2.39 -0.02 1.96 16 31 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.01 0.22 8.14 -2.39 -0.02 0.20 16 33 H 0.07 2.84 6.70 -2.39 -0.02 2.83 16 34 H 0.00 -0.22 7.99 -2.38 -0.02 -0.24 16 35 H -0.04 -2.84 8.12 -2.39 -0.02 -2.86 16 36 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 37 H 0.05 2.20 7.99 -2.39 -0.02 2.19 16 38 H 0.01 0.24 8.08 -2.39 -0.02 0.22 16 Total: -1.00 -76.56 307.03 -0.06 -76.63 By element: Atomic # 1 Polarization: 4.02 SS G_CDS: 0.29 Total: 4.31 kcal Atomic # 6 Polarization: -5.38 SS G_CDS: 4.10 Total: -1.28 kcal Atomic # 7 Polarization: -96.74 SS G_CDS: -6.43 Total: -103.17 kcal Atomic # 8 Polarization: -23.39 SS G_CDS: -0.05 Total: -23.44 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Total: -76.56 -0.06 -76.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049754169.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.855 kcal (2) G-P(sol) polarization free energy of solvation -76.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds