Wall clock time and date at job start Mon Mar 30 2020 03:43:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46902 * 109.47060 * 2 1 4 4 C 1.46905 * 110.99775 * 189.99923 * 3 2 1 5 5 C 1.53242 * 109.34032 * 187.25369 * 4 3 2 6 6 N 1.47083 * 108.51776 * 306.16776 * 5 4 3 7 7 C 1.34779 * 120.88264 * 231.18764 * 6 5 4 8 8 O 1.21278 * 119.99835 * 4.86171 * 7 6 5 9 9 C 1.50696 * 119.99992 * 184.86630 * 7 6 5 10 10 H 1.09000 * 109.46994 * 321.59526 * 9 7 6 11 11 C 1.52996 * 109.47304 * 81.59631 * 9 7 6 12 12 C 1.50705 * 109.46920 * 201.59611 * 9 7 6 13 13 H 1.08000 * 119.99847 * 0.02562 * 12 9 7 14 14 C 1.37873 * 119.99950 * 179.97438 * 12 9 7 15 15 N 1.31516 * 119.99966 * 0.02562 * 14 12 9 16 16 Si 1.86799 * 120.00021 * 179.97438 * 14 12 9 17 17 H 1.48499 * 109.46962 * 90.00529 * 16 14 12 18 18 H 1.48500 * 109.47549 * 210.00271 * 16 14 12 19 19 H 1.48498 * 109.47417 * 330.00555 * 16 14 12 20 20 C 1.47080 * 118.23664 * 51.46229 * 6 5 4 21 21 C 1.46898 * 110.99834 * 314.29709 * 3 2 1 22 22 H 1.08999 * 109.47281 * 300.00682 * 1 2 3 23 23 H 1.08997 * 109.47054 * 60.00102 * 1 2 3 24 24 H 1.08999 * 109.47041 * 180.02562 * 1 2 3 25 25 H 1.08990 * 109.47662 * 239.99728 * 2 1 3 26 26 H 1.09007 * 109.46796 * 119.99445 * 2 1 3 27 27 H 1.08996 * 109.49492 * 67.28915 * 4 3 2 28 28 H 1.09004 * 109.48933 * 307.20794 * 4 3 2 29 29 H 1.08996 * 109.63167 * 186.46399 * 5 4 3 30 30 H 1.08996 * 109.62852 * 65.87317 * 5 4 3 31 31 H 1.09000 * 109.47171 * 185.61302 * 11 9 7 32 32 H 1.08998 * 109.47089 * 305.61141 * 11 9 7 33 33 H 1.09003 * 109.47025 * 65.61298 * 11 9 7 34 34 H 0.97007 * 119.99895 * 179.97438 * 15 14 12 35 35 H 1.08997 * 109.63279 * 68.25170 * 20 6 5 36 36 H 1.09003 * 109.62566 * 188.83555 * 20 6 5 37 37 H 1.08998 * 109.49641 * 292.70613 * 21 3 2 38 38 H 1.08995 * 109.49394 * 52.79365 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4685 1.4311 -0.2381 5 6 3.9681 2.8677 -0.0514 6 7 3.1683 3.7556 -0.9089 7 6 3.7629 4.6257 -1.7491 8 8 4.9696 4.6233 -1.8703 9 6 2.9283 5.6016 -2.5377 10 1 2.0108 5.1130 -2.8657 11 6 2.5795 6.8029 -1.6567 12 6 3.7058 6.0699 -3.7408 13 1 4.7042 5.6977 -3.9169 14 6 3.1421 6.9727 -4.6172 15 7 1.9261 7.4256 -4.4030 16 14 4.1061 7.5537 -6.1081 17 1 3.8362 6.6499 -7.2550 18 1 3.6905 8.9357 -6.4585 19 1 5.5578 7.5375 -5.7960 20 6 1.7025 3.6731 -0.8208 21 6 1.2921 2.2005 -0.9816 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.8934 -0.5138 -0.8898 26 1 1.8933 -0.5138 0.8901 27 1 3.6807 1.1015 -1.2552 28 1 3.9746 0.7751 0.4702 29 1 5.0179 2.9305 -0.3376 30 1 3.8515 3.1633 0.9913 31 1 1.8948 7.4600 -2.1928 32 1 2.1054 6.4549 -0.7390 33 1 3.4899 7.3495 -1.4107 34 1 1.5296 8.0611 -5.0195 35 1 1.3724 4.0445 0.1493 36 1 1.2538 4.2684 -1.6161 37 1 1.5345 1.8604 -1.9883 38 1 0.2198 2.1027 -0.8124 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049814632.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:58 Heat of formation + Delta-G solvation = -28.180439 kcal Electronic energy + Delta-G solvation = -18086.262429 eV Core-core repulsion = 15349.819176 eV Total energy + Delta-G solvation = -2736.443254 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.64279 -37.75645 -34.50444 -33.79500 -31.58263 -30.21387 -30.10619 -26.50267 -25.14660 -23.70180 -22.97897 -21.49504 -20.28756 -18.29768 -16.58115 -16.06281 -15.53416 -15.09200 -14.94327 -14.83615 -14.52003 -14.27205 -13.62132 -13.00673 -12.74768 -12.52497 -12.24008 -11.95551 -11.81552 -11.39907 -11.28011 -11.16746 -10.96684 -10.92985 -10.70078 -10.62817 -10.60149 -10.20547 -9.96898 -8.94610 -8.56130 -8.45291 -8.27937 -7.93659 -6.02784 -4.05235 3.33662 3.39516 3.46474 3.61932 3.72379 3.96830 4.47368 4.87936 4.99570 5.04140 5.17648 5.30346 5.34071 5.43390 5.48176 5.52506 5.60982 5.75732 5.82437 5.90588 5.91403 6.06240 6.09423 6.22903 6.31943 6.69550 6.87097 6.97895 7.01783 7.04942 7.16603 7.47803 7.77509 7.99723 8.12420 8.41135 9.01048 9.24852 9.59573 11.05128 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.035682 B = 0.006000 C = 0.005714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.515489 B = 4665.717290 C = 4899.279199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.051 3.949 3 N -0.539 5.539 4 C 0.044 3.956 5 C 0.115 3.885 6 N -0.629 5.629 7 C 0.523 3.477 8 O -0.549 6.549 9 C 0.031 3.969 10 H 0.048 0.952 11 C -0.127 4.127 12 C -0.500 4.500 13 H 0.069 0.931 14 C 0.059 3.941 15 N -0.896 5.896 16 Si 0.899 3.101 17 H -0.281 1.281 18 H -0.286 1.286 19 H -0.273 1.273 20 C 0.114 3.886 21 C 0.033 3.967 22 H 0.064 0.936 23 H 0.060 0.940 24 H 0.057 0.943 25 H 0.030 0.970 26 H 0.073 0.927 27 H 0.037 0.963 28 H 0.079 0.921 29 H 0.090 0.910 30 H 0.064 0.936 31 H 0.090 0.910 32 H 0.012 0.988 33 H 0.034 0.966 34 H 0.261 0.739 35 H 0.067 0.933 36 H 0.101 0.899 37 H 0.038 0.962 38 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.511 -11.955 8.874 15.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.077 4.077 3 N -0.264 5.264 4 C -0.085 4.085 5 C -0.008 4.008 6 N -0.365 5.365 7 C 0.315 3.685 8 O -0.425 6.425 9 C 0.010 3.990 10 H 0.066 0.934 11 C -0.185 4.185 12 C -0.539 4.539 13 H 0.088 0.912 14 C -0.141 4.141 15 N -0.535 5.535 16 Si 0.727 3.273 17 H -0.207 1.207 18 H -0.212 1.212 19 H -0.197 1.197 20 C -0.009 4.009 21 C -0.095 4.095 22 H 0.083 0.917 23 H 0.079 0.921 24 H 0.076 0.924 25 H 0.049 0.951 26 H 0.091 0.909 27 H 0.055 0.945 28 H 0.098 0.902 29 H 0.109 0.891 30 H 0.082 0.918 31 H 0.109 0.891 32 H 0.031 0.969 33 H 0.053 0.947 34 H 0.070 0.930 35 H 0.085 0.915 36 H 0.119 0.881 37 H 0.057 0.943 38 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -4.054 -11.613 9.168 15.341 hybrid contribution 0.521 -0.137 -1.529 1.621 sum -3.532 -11.750 7.639 14.453 Atomic orbital electron populations 1.21949 0.95044 1.01731 1.02713 1.22072 0.95767 0.89344 1.00523 1.62059 1.03983 1.10333 1.50048 1.22476 0.88117 0.97946 0.99957 1.21495 0.96835 0.87900 0.94580 1.48421 1.06432 1.39580 1.42100 1.22032 0.89224 0.79839 0.77413 1.90513 1.15846 1.70664 1.65462 1.18890 0.95296 0.91148 0.93647 0.93449 1.21675 1.01060 0.99583 0.96183 1.21101 1.01695 1.25142 1.05915 0.91233 1.24932 0.95033 0.96061 0.98102 1.69882 1.14206 1.32163 1.37284 0.86466 0.80525 0.77766 0.82558 1.20727 1.21223 1.19731 1.21923 0.80830 0.95171 1.03021 1.22754 0.99094 0.94022 0.93648 0.91694 0.92090 0.92363 0.95133 0.90857 0.94483 0.90229 0.89138 0.91785 0.89129 0.96866 0.94669 0.92962 0.91484 0.88074 0.94329 0.89183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.39 9.16 37.16 0.34 -1.04 16 2 C 0.05 0.52 5.99 -3.82 -0.02 0.50 16 3 N -0.54 -6.89 4.78 -234.02 -1.12 -8.00 16 4 C 0.04 0.59 5.58 -3.70 -0.02 0.57 16 5 C 0.12 1.86 6.61 -3.60 -0.02 1.83 16 6 N -0.63 -11.91 3.00 -172.18 -0.52 -12.43 16 7 C 0.52 12.44 6.84 -10.99 -0.08 12.36 16 8 O -0.55 -14.77 15.18 5.56 0.08 -14.69 16 9 C 0.03 0.79 1.83 -92.93 -0.17 0.62 16 10 H 0.05 1.20 6.23 -51.93 -0.32 0.88 16 11 C -0.13 -3.03 8.84 37.16 0.33 -2.70 16 12 C -0.50 -14.35 8.34 -34.44 -0.29 -14.64 16 13 H 0.07 2.11 6.96 -52.49 -0.37 1.75 16 14 C 0.06 1.66 5.30 -17.82 -0.09 1.57 16 15 N -0.90 -25.14 11.38 55.43 0.63 -24.51 16 16 Si 0.90 21.91 29.54 -169.99 -5.02 16.89 16 17 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 18 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 19 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 20 C 0.11 1.81 6.11 -3.36 -0.02 1.79 16 21 C 0.03 0.45 5.06 -3.46 -0.02 0.43 16 22 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 23 H 0.06 0.56 6.18 -51.93 -0.32 0.23 16 24 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.03 0.32 8.08 -51.93 -0.42 -0.09 16 26 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.08 0.89 8.11 -51.93 -0.42 0.47 16 29 H 0.09 1.58 7.04 -51.93 -0.37 1.21 16 30 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.09 2.31 6.24 -51.93 -0.32 1.99 16 32 H 0.01 0.26 7.76 -51.93 -0.40 -0.14 16 33 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 35 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 36 H 0.10 1.72 5.50 -51.93 -0.29 1.44 16 37 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.09 1.02 5.73 -51.93 -0.30 0.73 16 LS Contribution 296.14 15.07 4.46 4.46 Total: -1.00 -31.17 296.14 -7.58 -38.75 By element: Atomic # 1 Polarization: 4.27 SS G_CDS: -6.04 Total: -1.77 kcal Atomic # 6 Polarization: 1.35 SS G_CDS: -0.06 Total: 1.29 kcal Atomic # 7 Polarization: -43.93 SS G_CDS: -1.00 Total: -44.94 kcal Atomic # 8 Polarization: -14.77 SS G_CDS: 0.08 Total: -14.69 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -31.17 -7.58 -38.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049814632.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.573 kcal (2) G-P(sol) polarization free energy of solvation -31.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds