Wall clock time and date at job start Mon Mar 30 2020 03:44:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46898 * 109.47007 * 2 1 4 4 C 1.46908 * 110.99996 * 190.00347 * 3 2 1 5 5 C 1.53239 * 109.34029 * 187.25441 * 4 3 2 6 6 N 1.47082 * 108.51788 * 306.16843 * 5 4 3 7 7 C 1.34773 * 120.87817 * 231.18505 * 6 5 4 8 8 O 1.21278 * 120.00278 * 5.34717 * 7 6 5 9 9 C 1.50706 * 120.00021 * 185.07208 * 7 6 5 10 10 H 1.09004 * 109.46803 * 25.51175 * 9 7 6 11 11 C 1.52996 * 109.47142 * 265.51211 * 9 7 6 12 12 C 1.50704 * 109.47100 * 145.50796 * 9 7 6 13 13 H 1.07997 * 120.00001 * 0.02562 * 12 9 7 14 14 C 1.37872 * 119.99800 * 180.02562 * 12 9 7 15 15 N 1.31513 * 120.00090 * 0.02562 * 14 12 9 16 16 Si 1.86797 * 119.99836 * 180.02562 * 14 12 9 17 17 H 1.48492 * 109.47379 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47425 * 119.99889 * 16 14 12 19 19 H 1.48510 * 109.46879 * 239.99794 * 16 14 12 20 20 C 1.47082 * 118.23749 * 51.46024 * 6 5 4 21 21 C 1.46898 * 111.00169 * 314.30255 * 3 2 1 22 22 H 1.08992 * 109.47408 * 60.00072 * 1 2 3 23 23 H 1.09001 * 109.46927 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.46603 * 299.99433 * 1 2 3 25 25 H 1.09005 * 109.47091 * 239.99980 * 2 1 3 26 26 H 1.09000 * 109.47213 * 120.00116 * 2 1 3 27 27 H 1.08998 * 109.49453 * 67.28877 * 4 3 2 28 28 H 1.09003 * 109.48720 * 307.20834 * 4 3 2 29 29 H 1.08992 * 109.62782 * 186.45997 * 5 4 3 30 30 H 1.08999 * 109.62773 * 65.87481 * 5 4 3 31 31 H 1.09004 * 109.47086 * 304.92869 * 11 9 7 32 32 H 1.09001 * 109.46943 * 64.93179 * 11 9 7 33 33 H 1.09001 * 109.46910 * 184.93330 * 11 9 7 34 34 H 0.97004 * 119.99855 * 180.02562 * 15 14 12 35 35 H 1.08995 * 109.62709 * 68.25194 * 20 6 5 36 36 H 1.09004 * 109.62166 * 188.82999 * 20 6 5 37 37 H 1.09000 * 109.49187 * 292.70485 * 21 3 2 38 38 H 1.08994 * 109.49186 * 52.78299 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4685 1.4312 -0.2382 5 6 3.9680 2.8678 -0.0514 6 7 3.1682 3.7556 -0.9089 7 6 3.7627 4.6258 -1.7489 8 8 4.9687 4.6176 -1.8768 9 6 2.9284 5.6049 -2.5341 10 1 1.9934 5.7912 -2.0056 11 6 2.6258 5.0235 -3.9165 12 6 3.6849 6.8992 -2.6881 13 1 4.6713 7.0023 -2.2605 14 6 3.1177 7.9517 -3.3747 15 7 1.9163 7.8263 -3.8949 16 14 4.0556 9.5557 -3.5662 17 1 5.3748 9.4411 -2.8941 18 1 4.2580 9.8417 -5.0092 19 1 3.2794 10.6600 -2.9468 20 6 1.7023 3.6730 -0.8207 21 6 1.2920 2.2006 -0.9815 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 3.6806 1.1016 -1.2553 28 1 3.9746 0.7751 0.4701 29 1 5.0178 2.9305 -0.3377 30 1 3.8515 3.1632 0.9912 31 1 3.5598 4.7558 -4.4105 32 1 2.0040 4.1347 -3.8086 33 1 2.0979 5.7658 -4.5152 34 1 1.5174 8.5667 -4.3783 35 1 1.3724 4.0444 0.1494 36 1 1.2536 4.2685 -1.6159 37 1 1.5345 1.8604 -1.9882 38 1 0.2198 2.1026 -0.8123 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049814633.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:01 Heat of formation + Delta-G solvation = -28.509565 kcal Electronic energy + Delta-G solvation = -18091.587767 eV Core-core repulsion = 15355.130242 eV Total energy + Delta-G solvation = -2736.457526 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.64707 -37.76410 -34.50854 -33.81770 -31.58240 -30.23118 -30.10626 -26.53397 -25.18847 -23.72501 -22.93446 -21.48025 -20.38152 -18.21012 -16.61230 -16.17675 -15.46882 -15.11393 -14.94788 -14.81975 -14.52856 -14.31083 -13.58357 -13.02639 -12.88419 -12.39003 -12.27231 -11.98499 -11.80567 -11.45997 -11.25387 -11.14185 -10.97415 -10.91494 -10.70550 -10.62983 -10.57496 -10.26261 -10.03017 -8.99069 -8.58219 -8.46229 -8.27001 -7.93542 -6.04113 -4.07753 3.31899 3.39324 3.46389 3.61809 3.72129 3.96263 4.46614 4.86770 4.98733 5.03059 5.16633 5.28510 5.32746 5.42172 5.46972 5.51589 5.60247 5.75000 5.81637 5.90128 5.90322 6.05396 6.10683 6.23668 6.31701 6.64988 6.87913 6.99372 7.01216 7.03535 7.14121 7.45390 7.77056 7.98618 8.13504 8.39466 8.96939 9.23813 9.56970 11.02983 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.043317 B = 0.005879 C = 0.005446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.243608 B = 4761.491030 C = 5139.904687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.051 3.949 3 N -0.539 5.539 4 C 0.044 3.956 5 C 0.115 3.885 6 N -0.629 5.629 7 C 0.525 3.475 8 O -0.551 6.551 9 C 0.031 3.969 10 H 0.047 0.953 11 C -0.130 4.130 12 C -0.497 4.497 13 H 0.066 0.934 14 C 0.059 3.941 15 N -0.895 5.895 16 Si 0.899 3.101 17 H -0.272 1.272 18 H -0.283 1.283 19 H -0.284 1.284 20 C 0.114 3.886 21 C 0.035 3.965 22 H 0.060 0.940 23 H 0.057 0.943 24 H 0.064 0.936 25 H 0.030 0.970 26 H 0.073 0.927 27 H 0.036 0.964 28 H 0.080 0.920 29 H 0.090 0.910 30 H 0.065 0.935 31 H 0.031 0.969 32 H 0.010 0.990 33 H 0.096 0.904 34 H 0.261 0.739 35 H 0.068 0.932 36 H 0.101 0.899 37 H 0.037 0.963 38 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.462 -13.514 6.780 15.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.077 4.077 3 N -0.264 5.264 4 C -0.084 4.084 5 C -0.009 4.009 6 N -0.365 5.365 7 C 0.317 3.683 8 O -0.428 6.428 9 C 0.010 3.990 10 H 0.065 0.935 11 C -0.188 4.188 12 C -0.535 4.535 13 H 0.085 0.915 14 C -0.141 4.141 15 N -0.534 5.534 16 Si 0.727 3.273 17 H -0.196 1.196 18 H -0.210 1.210 19 H -0.210 1.210 20 C -0.009 4.009 21 C -0.094 4.094 22 H 0.079 0.921 23 H 0.076 0.924 24 H 0.083 0.917 25 H 0.048 0.952 26 H 0.092 0.908 27 H 0.054 0.946 28 H 0.098 0.902 29 H 0.109 0.891 30 H 0.083 0.917 31 H 0.050 0.950 32 H 0.029 0.971 33 H 0.114 0.886 34 H 0.071 0.929 35 H 0.086 0.914 36 H 0.119 0.881 37 H 0.056 0.944 38 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -4.006 -13.198 7.053 15.491 hybrid contribution 0.508 0.374 -0.868 1.073 sum -3.498 -12.824 6.185 14.661 Atomic orbital electron populations 1.21950 0.95037 1.01733 1.02725 1.22073 0.95772 0.89327 1.00516 1.62048 1.03985 1.10324 1.50071 1.22476 0.88109 0.97975 0.99882 1.21499 0.96813 0.87834 0.94707 1.48423 1.06434 1.39545 1.42133 1.22040 0.89146 0.79546 0.77550 1.90514 1.15856 1.70772 1.65620 1.18913 0.95423 0.92084 0.92608 0.93486 1.21703 0.99450 0.98587 0.99090 1.21066 1.02719 0.95292 1.34473 0.91530 1.24927 0.95020 0.98865 0.95325 1.69869 1.14844 1.31924 1.36769 0.86400 0.80140 0.82925 0.77819 1.19609 1.20951 1.21000 1.21901 0.80831 0.95079 1.03120 1.22746 0.99108 0.93993 0.93546 0.92109 0.92358 0.91663 0.95169 0.90836 0.94570 0.90205 0.89133 0.91708 0.94960 0.97066 0.88580 0.92942 0.91405 0.88112 0.94446 0.89169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.37 9.16 37.16 0.34 -1.03 16 2 C 0.05 0.52 5.99 -3.83 -0.02 0.50 16 3 N -0.54 -6.85 4.78 -234.02 -1.12 -7.97 16 4 C 0.04 0.59 5.58 -3.70 -0.02 0.57 16 5 C 0.12 1.87 6.61 -3.60 -0.02 1.84 16 6 N -0.63 -12.03 3.00 -172.18 -0.52 -12.54 16 7 C 0.53 12.54 6.69 -10.98 -0.07 12.47 16 8 O -0.55 -14.85 15.56 5.56 0.09 -14.77 16 9 C 0.03 0.78 1.83 -92.92 -0.17 0.61 16 10 H 0.05 1.19 6.24 -51.93 -0.32 0.87 16 11 C -0.13 -3.15 8.94 37.16 0.33 -2.82 16 12 C -0.50 -14.23 8.32 -34.44 -0.29 -14.52 16 13 H 0.07 2.01 7.25 -52.49 -0.38 1.63 16 14 C 0.06 1.65 5.29 -17.82 -0.09 1.56 16 15 N -0.89 -25.04 11.30 55.43 0.63 -24.42 16 16 Si 0.90 21.80 29.54 -169.99 -5.02 16.78 16 17 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 18 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 19 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 20 C 0.11 1.83 6.32 -3.37 -0.02 1.81 16 21 C 0.03 0.46 5.06 -3.47 -0.02 0.44 16 22 H 0.06 0.54 6.18 -51.93 -0.32 0.22 16 23 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 25 H 0.03 0.31 8.08 -51.93 -0.42 -0.11 16 26 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.08 0.89 8.11 -51.93 -0.42 0.47 16 29 H 0.09 1.59 7.04 -51.93 -0.37 1.22 16 30 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 31 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.01 0.22 7.90 -51.93 -0.41 -0.19 16 33 H 0.10 2.50 5.96 -51.93 -0.31 2.19 16 34 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 35 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 36 H 0.10 1.72 5.43 -51.93 -0.28 1.44 16 37 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.09 1.02 5.73 -51.93 -0.30 0.72 16 LS Contribution 296.65 15.07 4.47 4.47 Total: -1.00 -31.16 296.65 -7.58 -38.74 By element: Atomic # 1 Polarization: 4.31 SS G_CDS: -6.05 Total: -1.74 kcal Atomic # 6 Polarization: 1.50 SS G_CDS: -0.06 Total: 1.44 kcal Atomic # 7 Polarization: -43.92 SS G_CDS: -1.01 Total: -44.93 kcal Atomic # 8 Polarization: -14.85 SS G_CDS: 0.09 Total: -14.77 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -31.16 -7.58 -38.74 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049814633.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.234 kcal (2) G-P(sol) polarization free energy of solvation -31.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds