Wall clock time and date at job start Mon Mar 30 2020 03:44:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46898 * 109.47007 * 2 1 4 4 C 1.46908 * 110.99996 * 190.00347 * 3 2 1 5 5 C 1.53239 * 109.34029 * 187.25441 * 4 3 2 6 6 N 1.47082 * 108.51788 * 306.16843 * 5 4 3 7 7 C 1.34773 * 120.87817 * 231.18505 * 6 5 4 8 8 O 1.21278 * 120.00278 * 5.34717 * 7 6 5 9 9 C 1.50706 * 120.00021 * 185.07208 * 7 6 5 10 10 H 1.09004 * 109.46803 * 25.51175 * 9 7 6 11 11 C 1.52996 * 109.47142 * 265.51211 * 9 7 6 12 12 C 1.50704 * 109.47100 * 145.50796 * 9 7 6 13 13 H 1.07997 * 120.00001 * 0.02562 * 12 9 7 14 14 C 1.37872 * 119.99800 * 180.02562 * 12 9 7 15 15 N 1.31513 * 120.00090 * 0.02562 * 14 12 9 16 16 Si 1.86797 * 119.99836 * 180.02562 * 14 12 9 17 17 H 1.48492 * 109.47379 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47425 * 119.99889 * 16 14 12 19 19 H 1.48510 * 109.46879 * 239.99794 * 16 14 12 20 20 C 1.47082 * 118.23749 * 51.46024 * 6 5 4 21 21 C 1.46898 * 111.00169 * 314.30255 * 3 2 1 22 22 H 1.08992 * 109.47408 * 60.00072 * 1 2 3 23 23 H 1.09001 * 109.46927 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.46603 * 299.99433 * 1 2 3 25 25 H 1.09005 * 109.47091 * 239.99980 * 2 1 3 26 26 H 1.09000 * 109.47213 * 120.00116 * 2 1 3 27 27 H 1.08998 * 109.49453 * 67.28877 * 4 3 2 28 28 H 1.09003 * 109.48720 * 307.20834 * 4 3 2 29 29 H 1.08992 * 109.62782 * 186.45997 * 5 4 3 30 30 H 1.08999 * 109.62773 * 65.87481 * 5 4 3 31 31 H 1.09004 * 109.47086 * 304.92869 * 11 9 7 32 32 H 1.09001 * 109.46943 * 64.93179 * 11 9 7 33 33 H 1.09001 * 109.46910 * 184.93330 * 11 9 7 34 34 H 0.97004 * 119.99855 * 180.02562 * 15 14 12 35 35 H 1.08995 * 109.62709 * 68.25194 * 20 6 5 36 36 H 1.09004 * 109.62166 * 188.82999 * 20 6 5 37 37 H 1.09000 * 109.49187 * 292.70485 * 21 3 2 38 38 H 1.08994 * 109.49186 * 52.78299 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4685 1.4312 -0.2382 5 6 3.9680 2.8678 -0.0514 6 7 3.1682 3.7556 -0.9089 7 6 3.7627 4.6258 -1.7489 8 8 4.9687 4.6176 -1.8768 9 6 2.9284 5.6049 -2.5341 10 1 1.9934 5.7912 -2.0056 11 6 2.6258 5.0235 -3.9165 12 6 3.6849 6.8992 -2.6881 13 1 4.6713 7.0023 -2.2605 14 6 3.1177 7.9517 -3.3747 15 7 1.9163 7.8263 -3.8949 16 14 4.0556 9.5557 -3.5662 17 1 5.3748 9.4411 -2.8941 18 1 4.2580 9.8417 -5.0092 19 1 3.2794 10.6600 -2.9468 20 6 1.7023 3.6730 -0.8207 21 6 1.2920 2.2006 -0.9815 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 3.6806 1.1016 -1.2553 28 1 3.9746 0.7751 0.4701 29 1 5.0178 2.9305 -0.3377 30 1 3.8515 3.1632 0.9912 31 1 3.5598 4.7558 -4.4105 32 1 2.0040 4.1347 -3.8086 33 1 2.0979 5.7658 -4.5152 34 1 1.5174 8.5667 -4.3783 35 1 1.3724 4.0444 0.1494 36 1 1.2536 4.2685 -1.6159 37 1 1.5345 1.8604 -1.9882 38 1 0.2198 2.1026 -0.8123 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049814633.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:00 Heat of formation + Delta-G solvation = -49.649471 kcal Electronic energy + Delta-G solvation = -18092.504462 eV Core-core repulsion = 15355.130242 eV Total energy + Delta-G solvation = -2737.374221 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.16482 -39.17567 -35.92609 -35.85058 -33.06858 -31.84817 -31.28933 -27.78003 -27.31195 -24.98562 -24.48057 -22.74188 -21.66328 -19.75450 -18.49243 -17.97764 -17.07847 -16.36218 -16.18577 -16.12768 -16.04681 -15.69141 -14.86763 -14.78721 -14.55949 -13.95865 -13.42383 -13.36121 -13.03691 -12.92898 -12.79209 -12.65044 -12.59355 -12.35236 -12.24650 -12.16978 -12.09401 -12.02402 -11.62350 -11.08137 -10.62073 -10.25354 -9.71795 -9.24306 -8.17392 -6.28742 1.39135 1.41081 1.53875 1.86368 2.14125 2.44846 2.90651 3.11657 3.78715 3.97142 3.97673 4.17067 4.24195 4.30368 4.41196 4.49141 4.57579 4.64020 4.67194 4.73342 4.78261 4.84541 4.92609 4.99519 5.03884 5.05969 5.17474 5.34849 5.38858 5.61156 5.70726 5.89720 6.01400 6.07088 6.17733 6.56601 6.76001 7.34922 7.45620 8.88424 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.043317 B = 0.005879 C = 0.005446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.243608 B = 4761.491030 C = 5139.904687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.050 3.950 3 N -0.542 5.542 4 C 0.054 3.946 5 C 0.111 3.889 6 N -0.623 5.623 7 C 0.522 3.478 8 O -0.594 6.594 9 C 0.029 3.971 10 H 0.047 0.953 11 C -0.117 4.117 12 C -0.528 4.528 13 H 0.039 0.961 14 C 0.023 3.977 15 N -0.908 5.908 16 Si 0.957 3.043 17 H -0.281 1.281 18 H -0.274 1.274 19 H -0.270 1.270 20 C 0.109 3.891 21 C 0.043 3.957 22 H 0.057 0.943 23 H 0.074 0.926 24 H 0.065 0.935 25 H 0.029 0.971 26 H 0.088 0.912 27 H 0.023 0.977 28 H 0.109 0.891 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.016 0.984 32 H 0.041 0.959 33 H 0.077 0.923 34 H 0.267 0.733 35 H 0.081 0.919 36 H 0.088 0.912 37 H 0.026 0.974 38 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.702 -14.608 7.647 17.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.077 4.077 3 N -0.268 5.268 4 C -0.075 4.075 5 C -0.012 4.012 6 N -0.357 5.357 7 C 0.313 3.687 8 O -0.474 6.474 9 C 0.008 3.992 10 H 0.064 0.936 11 C -0.175 4.175 12 C -0.566 4.566 13 H 0.057 0.943 14 C -0.177 4.177 15 N -0.547 5.547 16 Si 0.782 3.218 17 H -0.206 1.206 18 H -0.200 1.200 19 H -0.195 1.195 20 C -0.014 4.014 21 C -0.085 4.085 22 H 0.076 0.924 23 H 0.093 0.907 24 H 0.084 0.916 25 H 0.047 0.953 26 H 0.106 0.894 27 H 0.041 0.959 28 H 0.127 0.873 29 H 0.091 0.909 30 H 0.097 0.903 31 H 0.035 0.965 32 H 0.059 0.941 33 H 0.096 0.904 34 H 0.076 0.924 35 H 0.099 0.901 36 H 0.106 0.894 37 H 0.045 0.955 38 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -5.300 -14.330 7.945 17.221 hybrid contribution 0.842 0.664 -1.082 1.523 sum -4.458 -13.666 6.863 15.929 Atomic orbital electron populations 1.21930 0.93783 1.02880 1.02536 1.22181 0.96812 0.87571 1.01160 1.62071 1.03301 1.11972 1.49443 1.22384 0.89057 0.96033 1.00046 1.21698 0.95664 0.89223 0.94600 1.48405 1.08114 1.38348 1.40815 1.21717 0.88378 0.80196 0.78383 1.90481 1.17306 1.72225 1.67412 1.18833 0.95163 0.91731 0.93498 0.93557 1.21518 0.98843 0.99153 0.98021 1.21175 1.02208 0.97536 1.35706 0.94251 1.25571 0.95884 1.01515 0.94705 1.69931 1.15402 1.32888 1.36434 0.85524 0.78592 0.79577 0.78077 1.20559 1.19975 1.19508 1.22107 0.78659 0.97277 1.03359 1.22675 1.00649 0.91935 0.93282 0.92421 0.90669 0.91620 0.95252 0.89411 0.95858 0.87306 0.90946 0.90258 0.96495 0.94054 0.90388 0.92377 0.90073 0.89403 0.95530 0.86536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 9.16 71.98 0.66 -1.49 16 2 C 0.05 0.85 5.99 86.30 0.52 1.37 16 3 N -0.54 -12.27 4.78 -894.31 -4.27 -16.54 16 4 C 0.05 1.32 5.58 86.38 0.48 1.81 16 5 C 0.11 3.51 6.61 86.35 0.57 4.08 16 6 N -0.62 -23.68 3.00 -817.06 -2.45 -26.13 16 7 C 0.52 25.51 6.69 87.66 0.59 26.10 16 8 O -0.59 -33.22 15.56 -3.02 -0.05 -33.26 16 9 C 0.03 1.50 1.83 -12.28 -0.02 1.47 16 10 H 0.05 2.38 6.24 -2.38 -0.01 2.37 16 11 C -0.12 -5.74 8.94 71.98 0.64 -5.10 16 12 C -0.53 -31.08 8.32 25.60 0.21 -30.87 16 13 H 0.04 2.48 7.25 -2.91 -0.02 2.46 16 14 C 0.02 1.28 5.29 84.65 0.45 1.73 16 15 N -0.91 -50.76 11.30 21.45 0.24 -50.52 16 16 Si 0.96 44.95 29.54 68.60 2.03 46.97 16 17 H -0.28 -13.49 7.11 99.48 0.71 -12.78 16 18 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 19 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 20 C 0.11 3.35 6.32 86.50 0.55 3.89 16 21 C 0.04 1.05 5.06 86.54 0.44 1.49 16 22 H 0.06 0.84 6.18 -2.39 -0.01 0.83 16 23 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 24 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 25 H 0.03 0.52 8.08 -2.38 -0.02 0.50 16 26 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 27 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.11 2.09 8.11 -2.39 -0.02 2.07 16 29 H 0.07 2.57 7.04 -2.39 -0.02 2.55 16 30 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 31 H 0.02 0.82 8.14 -2.38 -0.02 0.80 16 32 H 0.04 1.71 7.90 -2.39 -0.02 1.69 16 33 H 0.08 4.10 5.96 -2.39 -0.01 4.09 16 34 H 0.27 14.01 8.31 -92.70 -0.77 13.24 16 35 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 36 H 0.09 2.95 5.43 -2.39 -0.01 2.93 16 37 H 0.03 0.72 8.14 -2.39 -0.02 0.70 16 38 H 0.12 2.26 5.73 -2.39 -0.01 2.25 16 Total: -1.00 -67.78 296.65 1.61 -66.17 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: 1.03 Total: 8.83 kcal Atomic # 6 Polarization: -0.60 SS G_CDS: 5.08 Total: 4.48 kcal Atomic # 7 Polarization: -86.71 SS G_CDS: -6.48 Total: -93.19 kcal Atomic # 8 Polarization: -33.22 SS G_CDS: -0.05 Total: -33.26 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.97 kcal Total: -67.78 1.61 -66.17 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049814633.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.524 kcal (2) G-P(sol) polarization free energy of solvation -67.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds