Wall clock time and date at job start Mon Mar 30 2020 03:23:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.46812 * 2 1 4 4 C 1.50701 * 109.47247 * 240.00079 * 2 1 3 5 5 H 1.07995 * 120.00006 * 240.00415 * 4 2 1 6 6 C 1.37875 * 120.00190 * 59.99565 * 4 2 1 7 7 N 1.31520 * 119.99966 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00189 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47255 * 90.00191 * 8 6 4 10 10 H 1.48503 * 109.46900 * 210.00227 * 8 6 4 11 11 H 1.48494 * 109.46968 * 329.99883 * 8 6 4 12 12 N 1.46498 * 109.47036 * 120.00065 * 2 1 3 13 13 C 1.34777 * 119.99828 * 274.72131 * 12 2 1 14 14 O 1.21593 * 119.99949 * 0.28071 * 13 12 2 15 15 N 1.34777 * 120.00128 * 180.27942 * 13 12 2 16 16 C 1.46499 * 120.00065 * 180.02562 * 15 13 12 17 17 C 1.52999 * 109.47136 * 274.99791 * 16 15 13 18 18 C 1.53005 * 109.46930 * 179.97438 * 17 16 15 19 19 C 1.53002 * 109.46995 * 60.00125 * 18 17 16 20 20 C 1.52999 * 109.47179 * 299.99723 * 19 18 17 21 21 C 1.53002 * 109.46916 * 154.99838 * 16 15 13 22 22 H 1.09009 * 109.47238 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.47293 * 300.00104 * 1 2 3 24 24 H 1.09003 * 109.47189 * 60.00254 * 1 2 3 25 25 H 0.96995 * 120.00431 * 179.97438 * 7 6 4 26 26 H 0.97001 * 120.00384 * 95.00578 * 12 2 1 27 27 H 0.97000 * 119.99549 * 359.97438 * 15 13 12 28 28 H 1.09005 * 109.47375 * 35.00280 * 16 15 13 29 29 H 1.09000 * 109.47077 * 299.99809 * 17 16 15 30 30 H 1.08995 * 109.47036 * 60.00460 * 17 16 15 31 31 H 1.09000 * 109.47108 * 299.99819 * 18 17 16 32 32 H 1.08995 * 109.46609 * 179.97438 * 18 17 16 33 33 H 1.08996 * 109.46721 * 179.97438 * 19 18 17 34 34 H 1.09000 * 109.47442 * 59.99899 * 19 18 17 35 35 H 1.09000 * 109.47077 * 300.00399 * 20 19 18 36 36 H 1.08995 * 109.47036 * 179.97438 * 20 19 18 37 37 H 1.09004 * 109.47220 * 299.99347 * 21 16 15 38 38 H 1.09000 * 109.47442 * 60.00102 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9434 0.8302 -2.6034 8 14 2.3213 -1.1204 -4.0080 9 1 1.3428 -2.1618 -4.4119 10 1 2.4865 -0.1414 -5.1123 11 1 3.6293 -1.7582 -3.7122 12 7 2.0183 -0.6906 1.1962 13 6 2.1523 -0.0169 2.3557 14 8 1.8631 1.1629 2.4103 15 7 2.6069 -0.6508 3.4548 16 6 2.7520 0.0814 4.7154 17 6 4.1087 0.7883 4.7412 18 6 4.2599 1.5535 6.0575 19 6 4.1727 0.5741 7.2297 20 6 2.8161 -0.1328 7.2038 21 6 2.6651 -0.8985 5.8872 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 0.7094 1.1618 -3.4844 26 1 2.2491 -1.6318 1.1526 27 1 2.8372 -1.5921 3.4113 28 1 1.9554 0.8206 4.8000 29 1 4.9052 0.0491 4.6567 30 1 4.1706 1.4864 3.9065 31 1 3.4634 2.2928 6.1416 32 1 5.2266 2.0567 6.0761 33 1 4.2810 1.1192 8.1674 34 1 4.9693 -0.1652 7.1456 35 1 2.0195 0.6064 7.2880 36 1 2.7542 -0.8309 8.0386 37 1 1.6985 -1.4021 5.8688 38 1 3.4616 -1.6377 5.8026 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050391383.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:09 Heat of formation + Delta-G solvation = -61.427073 kcal Electronic energy + Delta-G solvation = -17528.768242 eV Core-core repulsion = 14790.883306 eV Total energy + Delta-G solvation = -2737.884936 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.59281 -37.92275 -34.80897 -33.60043 -32.25390 -30.78415 -29.60026 -27.88874 -25.18661 -22.73982 -22.52073 -20.89539 -20.01410 -19.50559 -17.89496 -16.40483 -15.72221 -15.08577 -14.76135 -14.52324 -14.19063 -14.00945 -13.53260 -13.26041 -12.81524 -12.43751 -12.27548 -12.20562 -11.66642 -11.23870 -11.19641 -11.05342 -10.91206 -10.71482 -10.67638 -10.40428 -10.26770 -10.18658 -10.17670 -9.24824 -8.97154 -8.59036 -8.48636 -7.71947 -6.07237 -4.15891 3.27137 3.33250 3.35476 3.48470 4.06928 4.36916 4.66076 4.72682 4.84180 5.13182 5.20141 5.24221 5.26546 5.42479 5.47182 5.52244 5.58910 5.72352 5.94634 6.00565 6.06222 6.10034 6.20597 6.39506 6.45853 6.88804 7.04364 7.06852 7.23080 7.40294 7.61639 7.69771 7.94934 8.14948 8.23568 8.83594 9.04761 9.43119 9.58888 10.98905 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.051343 B = 0.004554 C = 0.004509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 545.223757 B = 6146.297060 C = 6208.949433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.280 3.720 3 H 0.047 0.953 4 C -0.531 4.531 5 H 0.060 0.940 6 C 0.065 3.935 7 N -0.884 5.884 8 Si 0.902 3.098 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.728 5.728 13 C 0.695 3.305 14 O -0.601 6.601 15 N -0.756 5.756 16 C 0.167 3.833 17 C -0.131 4.131 18 C -0.117 4.117 19 C -0.120 4.120 20 C -0.115 4.115 21 C -0.126 4.126 22 H 0.024 0.976 23 H 0.014 0.986 24 H 0.089 0.911 25 H 0.264 0.736 26 H 0.383 0.617 27 H 0.389 0.611 28 H 0.084 0.916 29 H 0.059 0.941 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.064 0.936 36 H 0.063 0.937 37 H 0.067 0.933 38 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.955 -4.274 16.638 17.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.178 3.822 3 H 0.065 0.935 4 C -0.570 4.570 5 H 0.078 0.922 6 C -0.138 4.138 7 N -0.522 5.522 8 Si 0.729 3.271 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.379 5.379 13 C 0.395 3.605 14 O -0.480 6.480 15 N -0.411 5.411 16 C 0.061 3.939 17 C -0.170 4.170 18 C -0.155 4.155 19 C -0.158 4.158 20 C -0.153 4.153 21 C -0.164 4.164 22 H 0.043 0.957 23 H 0.033 0.967 24 H 0.107 0.893 25 H 0.074 0.926 26 H 0.215 0.785 27 H 0.221 0.779 28 H 0.102 0.898 29 H 0.078 0.922 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.085 0.915 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 4.572 -3.029 16.475 17.364 hybrid contribution 0.528 -1.382 -0.956 1.761 sum 5.100 -4.411 15.519 16.921 Atomic orbital electron populations 1.22092 0.98775 0.98912 1.00767 1.18598 0.90705 0.93703 0.79165 0.93489 1.21238 1.32258 1.13122 0.90380 0.92187 1.24884 0.94904 0.94977 0.98992 1.69912 1.36025 1.22441 1.23779 0.86451 0.79117 0.79252 0.82268 1.20598 1.21092 1.19914 1.45799 1.69413 1.13081 1.09608 1.16179 0.78409 0.85389 0.80569 1.90855 1.58002 1.14596 1.84543 1.45288 1.72941 1.13240 1.09675 1.20657 0.97655 0.93767 0.81836 1.21960 0.97395 0.99792 0.97810 1.21502 1.01805 0.97963 0.94241 1.21567 0.97367 0.98574 0.98272 1.21484 0.97814 0.99357 0.96655 1.21821 1.02179 0.98125 0.94274 0.95668 0.96675 0.89275 0.92635 0.78510 0.77866 0.89802 0.92238 0.91131 0.91763 0.92039 0.92165 0.92086 0.91678 0.91860 0.91477 0.91677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.79 9.26 37.16 0.34 -3.44 16 2 C 0.28 7.40 2.56 -69.08 -0.18 7.23 16 3 H 0.05 1.43 7.57 -51.93 -0.39 1.04 16 4 C -0.53 -14.41 8.73 -34.44 -0.30 -14.71 16 5 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 6 C 0.07 1.79 5.30 -17.82 -0.09 1.70 16 7 N -0.88 -25.36 11.32 55.43 0.63 -24.73 16 8 Si 0.90 20.92 29.54 -169.99 -5.02 15.90 16 9 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 10 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 12 N -0.73 -15.84 5.07 -59.81 -0.30 -16.14 16 13 C 0.69 14.71 8.50 -86.92 -0.74 13.98 16 14 O -0.60 -15.30 15.67 5.28 0.08 -15.21 16 15 N -0.76 -11.77 5.08 -58.67 -0.30 -12.07 16 16 C 0.17 2.29 2.45 -67.93 -0.17 2.12 16 17 C -0.13 -1.72 5.49 -26.73 -0.15 -1.87 16 18 C -0.12 -1.24 5.92 -26.73 -0.16 -1.40 16 19 C -0.12 -1.05 5.92 -26.73 -0.16 -1.21 16 20 C -0.11 -1.02 5.93 -26.70 -0.16 -1.17 16 21 C -0.13 -1.27 5.39 -26.70 -0.14 -1.42 16 22 H 0.02 0.60 8.14 -51.92 -0.42 0.18 16 23 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 24 H 0.09 2.48 6.07 -51.93 -0.32 2.16 16 25 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 26 H 0.38 7.19 8.55 -40.82 -0.35 6.84 16 27 H 0.39 4.90 8.62 -40.82 -0.35 4.55 16 28 H 0.08 1.36 7.58 -51.93 -0.39 0.97 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 LS Contribution 305.61 15.07 4.61 4.61 Total: -1.00 -31.38 305.61 -8.62 -40.00 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: -6.42 Total: 7.86 kcal Atomic # 6 Polarization: 1.70 SS G_CDS: -1.90 Total: -0.20 kcal Atomic # 7 Polarization: -52.98 SS G_CDS: 0.03 Total: -52.95 kcal Atomic # 8 Polarization: -15.30 SS G_CDS: 0.08 Total: -15.21 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -31.38 -8.62 -40.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050391383.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.424 kcal (2) G-P(sol) polarization free energy of solvation -31.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds