Wall clock time and date at job start Mon Mar 30 2020 03:23:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.46812 * 2 1 4 4 C 1.50701 * 109.47247 * 240.00079 * 2 1 3 5 5 H 1.07995 * 120.00006 * 240.00415 * 4 2 1 6 6 C 1.37875 * 120.00190 * 59.99565 * 4 2 1 7 7 N 1.31520 * 119.99966 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00189 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47255 * 90.00191 * 8 6 4 10 10 H 1.48503 * 109.46900 * 210.00227 * 8 6 4 11 11 H 1.48494 * 109.46968 * 329.99883 * 8 6 4 12 12 N 1.46498 * 109.47036 * 120.00065 * 2 1 3 13 13 C 1.34777 * 119.99828 * 274.72131 * 12 2 1 14 14 O 1.21593 * 119.99949 * 0.28071 * 13 12 2 15 15 N 1.34777 * 120.00128 * 180.27942 * 13 12 2 16 16 C 1.46499 * 120.00065 * 180.02562 * 15 13 12 17 17 C 1.52999 * 109.47136 * 274.99791 * 16 15 13 18 18 C 1.53005 * 109.46930 * 179.97438 * 17 16 15 19 19 C 1.53002 * 109.46995 * 60.00125 * 18 17 16 20 20 C 1.52999 * 109.47179 * 299.99723 * 19 18 17 21 21 C 1.53002 * 109.46916 * 154.99838 * 16 15 13 22 22 H 1.09009 * 109.47238 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.47293 * 300.00104 * 1 2 3 24 24 H 1.09003 * 109.47189 * 60.00254 * 1 2 3 25 25 H 0.96995 * 120.00431 * 179.97438 * 7 6 4 26 26 H 0.97001 * 120.00384 * 95.00578 * 12 2 1 27 27 H 0.97000 * 119.99549 * 359.97438 * 15 13 12 28 28 H 1.09005 * 109.47375 * 35.00280 * 16 15 13 29 29 H 1.09000 * 109.47077 * 299.99809 * 17 16 15 30 30 H 1.08995 * 109.47036 * 60.00460 * 17 16 15 31 31 H 1.09000 * 109.47108 * 299.99819 * 18 17 16 32 32 H 1.08995 * 109.46609 * 179.97438 * 18 17 16 33 33 H 1.08996 * 109.46721 * 179.97438 * 19 18 17 34 34 H 1.09000 * 109.47442 * 59.99899 * 19 18 17 35 35 H 1.09000 * 109.47077 * 300.00399 * 20 19 18 36 36 H 1.08995 * 109.47036 * 179.97438 * 20 19 18 37 37 H 1.09004 * 109.47220 * 299.99347 * 21 16 15 38 38 H 1.09000 * 109.47442 * 60.00102 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9434 0.8302 -2.6034 8 14 2.3213 -1.1204 -4.0080 9 1 1.3428 -2.1618 -4.4119 10 1 2.4865 -0.1414 -5.1123 11 1 3.6293 -1.7582 -3.7122 12 7 2.0183 -0.6906 1.1962 13 6 2.1523 -0.0169 2.3557 14 8 1.8631 1.1629 2.4103 15 7 2.6069 -0.6508 3.4548 16 6 2.7520 0.0814 4.7154 17 6 4.1087 0.7883 4.7412 18 6 4.2599 1.5535 6.0575 19 6 4.1727 0.5741 7.2297 20 6 2.8161 -0.1328 7.2038 21 6 2.6651 -0.8985 5.8872 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 0.7094 1.1618 -3.4844 26 1 2.2491 -1.6318 1.1526 27 1 2.8372 -1.5921 3.4113 28 1 1.9554 0.8206 4.8000 29 1 4.9052 0.0491 4.6567 30 1 4.1706 1.4864 3.9065 31 1 3.4634 2.2928 6.1416 32 1 5.2266 2.0567 6.0761 33 1 4.2810 1.1192 8.1674 34 1 4.9693 -0.1652 7.1456 35 1 2.0195 0.6064 7.2880 36 1 2.7542 -0.8309 8.0386 37 1 1.6985 -1.4021 5.8688 38 1 3.4616 -1.6377 5.8026 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050391383.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:08 Heat of formation + Delta-G solvation = -82.808567 kcal Electronic energy + Delta-G solvation = -17529.695413 eV Core-core repulsion = 14790.883306 eV Total energy + Delta-G solvation = -2738.812107 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.09915 -39.14626 -36.71517 -35.06262 -34.20916 -31.65600 -31.20216 -29.39525 -27.32449 -23.99268 -23.50721 -22.49166 -21.47713 -20.82269 -19.58086 -18.04497 -17.45343 -16.69417 -16.18052 -16.06440 -15.30534 -15.16530 -14.98072 -14.75692 -14.36357 -13.89767 -13.63003 -13.41538 -13.09695 -12.96335 -12.85556 -12.69968 -12.27817 -12.18431 -12.12942 -12.03782 -11.56462 -11.34537 -11.18190 -11.08594 -10.98938 -10.59406 -10.11250 -9.50237 -8.16306 -6.33874 1.45488 1.46828 1.57336 1.97413 2.34799 2.44096 3.13945 3.58094 3.76949 3.87076 4.08369 4.26575 4.34833 4.48003 4.59076 4.60423 4.74038 4.75225 4.92611 4.94162 5.10336 5.13551 5.14771 5.23409 5.25186 5.35886 5.41270 5.44163 5.54394 5.62670 5.70628 5.72515 5.89728 6.12071 6.39181 6.74852 7.34669 7.41400 7.84169 8.90488 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.051343 B = 0.004554 C = 0.004509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 545.223757 B = 6146.297060 C = 6208.949433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.288 3.712 3 H -0.006 1.006 4 C -0.546 4.546 5 H 0.073 0.927 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.976 3.024 9 H -0.270 1.270 10 H -0.286 1.286 11 H -0.264 1.264 12 N -0.723 5.723 13 C 0.691 3.309 14 O -0.649 6.649 15 N -0.733 5.733 16 C 0.162 3.838 17 C -0.127 4.127 18 C -0.115 4.115 19 C -0.115 4.115 20 C -0.114 4.114 21 C -0.116 4.116 22 H 0.040 0.960 23 H 0.008 0.992 24 H 0.067 0.933 25 H 0.265 0.735 26 H 0.401 0.599 27 H 0.408 0.592 28 H 0.052 0.948 29 H 0.074 0.926 30 H 0.027 0.973 31 H 0.052 0.948 32 H 0.070 0.930 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.056 0.944 36 H 0.087 0.913 37 H 0.071 0.929 38 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.141 -6.741 17.834 20.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.184 3.816 3 H 0.012 0.988 4 C -0.584 4.584 5 H 0.091 0.909 6 C -0.187 4.187 7 N -0.557 5.557 8 Si 0.800 3.200 9 H -0.195 1.195 10 H -0.212 1.212 11 H -0.188 1.188 12 N -0.375 5.375 13 C 0.391 3.609 14 O -0.532 6.532 15 N -0.389 5.389 16 C 0.057 3.943 17 C -0.166 4.166 18 C -0.154 4.154 19 C -0.152 4.152 20 C -0.152 4.152 21 C -0.154 4.154 22 H 0.059 0.941 23 H 0.027 0.973 24 H 0.085 0.915 25 H 0.075 0.925 26 H 0.236 0.764 27 H 0.244 0.756 28 H 0.071 0.929 29 H 0.093 0.907 30 H 0.046 0.954 31 H 0.070 0.930 32 H 0.089 0.911 33 H 0.095 0.905 34 H 0.091 0.909 35 H 0.075 0.925 36 H 0.106 0.894 37 H 0.089 0.911 38 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 5.784 -5.561 17.728 19.459 hybrid contribution 0.166 -0.562 -1.269 1.398 sum 5.950 -6.123 16.459 18.541 Atomic orbital electron populations 1.21906 0.98544 0.99321 0.99336 1.18199 0.90842 0.91521 0.81087 0.98789 1.21539 1.32596 1.13549 0.90728 0.90862 1.25831 0.94885 0.95587 1.02369 1.70067 1.37080 1.23943 1.24616 0.85293 0.78950 0.77987 0.77764 1.19536 1.21215 1.18827 1.45419 1.69615 1.13741 1.08774 1.16365 0.78285 0.84822 0.81428 1.90824 1.59987 1.16978 1.85397 1.45106 1.71083 1.14079 1.08638 1.20873 0.96946 0.94334 0.82193 1.21904 0.97430 0.99419 0.97829 1.21502 1.01882 0.98160 0.93806 1.21551 0.97669 0.98332 0.97686 1.21516 0.97638 0.99583 0.96485 1.21784 1.03236 0.97484 0.92889 0.94109 0.97270 0.91476 0.92538 0.76449 0.75588 0.92936 0.90738 0.95370 0.92954 0.91146 0.90540 0.90860 0.92475 0.89401 0.91071 0.89634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.99 9.26 71.98 0.67 -6.33 16 2 C 0.29 15.60 2.56 44.24 0.11 15.71 16 3 H -0.01 -0.37 7.57 -2.39 -0.02 -0.39 16 4 C -0.55 -29.61 8.73 25.60 0.22 -29.38 16 5 H 0.07 3.69 7.74 -2.91 -0.02 3.67 16 6 C 0.01 0.72 5.30 84.65 0.45 1.17 16 7 N -0.92 -53.77 11.32 21.45 0.24 -53.53 16 8 Si 0.98 42.49 29.54 68.60 2.03 44.52 16 9 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 10 H -0.29 -12.44 7.11 99.48 0.71 -11.73 16 11 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 12 N -0.72 -31.68 5.07 -461.41 -2.34 -34.02 16 13 C 0.69 29.89 8.50 179.05 1.52 31.41 16 14 O -0.65 -34.75 15.67 -4.01 -0.06 -34.81 16 15 N -0.73 -22.39 5.08 -457.80 -2.33 -24.71 16 16 C 0.16 4.37 2.45 44.99 0.11 4.48 16 17 C -0.13 -3.32 5.49 30.60 0.17 -3.15 16 18 C -0.12 -2.35 5.92 30.60 0.18 -2.16 16 19 C -0.12 -1.67 5.92 30.59 0.18 -1.48 16 20 C -0.11 -1.68 5.93 30.61 0.18 -1.50 16 21 C -0.12 -2.04 5.39 30.61 0.17 -1.87 16 22 H 0.04 1.97 8.14 -2.38 -0.02 1.95 16 23 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 24 H 0.07 3.85 6.07 -2.39 -0.01 3.84 16 25 H 0.27 14.65 8.31 -92.71 -0.77 13.88 16 26 H 0.40 14.59 8.55 -92.71 -0.79 13.80 16 27 H 0.41 9.40 8.62 -92.71 -0.80 8.61 16 28 H 0.05 1.77 7.58 -2.38 -0.02 1.75 16 29 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.05 1.17 8.14 -2.39 -0.02 1.16 16 32 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 38 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -70.58 305.61 0.95 -69.63 By element: Atomic # 1 Polarization: 26.58 SS G_CDS: -0.55 Total: 26.03 kcal Atomic # 6 Polarization: 2.93 SS G_CDS: 3.96 Total: 6.89 kcal Atomic # 7 Polarization: -107.84 SS G_CDS: -4.42 Total: -112.26 kcal Atomic # 8 Polarization: -34.75 SS G_CDS: -0.06 Total: -34.81 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.52 kcal Total: -70.58 0.95 -69.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050391383.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.178 kcal (2) G-P(sol) polarization free energy of solvation -70.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds