Wall clock time and date at job start Mon Mar 30 2020 03:18:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47336 * 2 1 4 4 C 1.50702 * 109.47336 * 239.99732 * 2 1 3 5 5 H 1.08000 * 119.99680 * 275.00069 * 4 2 1 6 6 C 1.37872 * 120.00055 * 94.99732 * 4 2 1 7 7 N 1.31508 * 120.00190 * 184.91356 * 6 4 2 8 8 Si 1.86801 * 119.99962 * 4.92069 * 6 4 2 9 9 H 1.48503 * 109.47267 * 84.82787 * 8 6 4 10 10 H 1.48499 * 109.47288 * 204.82922 * 8 6 4 11 11 H 1.48499 * 109.47227 * 324.83373 * 8 6 4 12 12 N 1.46505 * 109.47246 * 119.99923 * 2 1 3 13 13 C 1.34780 * 119.99729 * 274.99742 * 12 2 1 14 14 O 1.21287 * 119.99969 * 0.02562 * 13 12 2 15 15 C 1.50701 * 120.00249 * 179.97438 * 13 12 2 16 16 C 1.52994 * 109.47554 * 180.02562 * 15 13 12 17 17 C 1.52998 * 109.47534 * 180.02562 * 16 15 13 18 18 C 1.53005 * 109.46741 * 59.99644 * 17 16 15 19 19 N 1.46899 * 109.46803 * 180.02562 * 18 17 16 20 20 C 1.52994 * 109.47397 * 300.00440 * 18 17 16 21 21 C 1.52998 * 109.47534 * 60.00046 * 20 18 17 22 22 H 1.09002 * 109.46808 * 175.04370 * 1 2 3 23 23 H 1.09008 * 109.46875 * 295.03731 * 1 2 3 24 24 H 1.08997 * 109.47608 * 55.04106 * 1 2 3 25 25 H 0.97000 * 120.00674 * 179.97438 * 7 6 4 26 26 H 0.96997 * 120.00619 * 94.99944 * 12 2 1 27 27 H 1.09007 * 109.46574 * 300.00515 * 15 13 12 28 28 H 1.08997 * 109.47214 * 300.00541 * 16 15 13 29 29 H 1.08998 * 109.47183 * 60.00070 * 16 15 13 30 30 H 1.08994 * 109.47291 * 179.97438 * 17 16 15 31 31 H 1.09007 * 109.46832 * 300.00742 * 17 16 15 32 32 H 1.08997 * 109.46548 * 60.00926 * 18 17 16 33 33 H 1.00906 * 111.00352 * 300.00399 * 19 18 17 34 34 H 1.00899 * 110.99867 * 63.95504 * 19 18 17 35 35 H 1.09007 * 109.46947 * 300.00014 * 20 18 17 36 36 H 1.08998 * 109.46731 * 180.02562 * 20 18 17 37 37 H 1.08994 * 109.47291 * 180.02562 * 21 20 18 38 38 H 1.08997 * 109.46843 * 59.99250 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.1355 -1.7855 -1.2289 6 6 2.3602 0.0120 -2.3580 7 7 2.7060 -0.6133 -3.4621 8 14 2.3135 1.8789 -2.3175 9 1 3.5991 2.3948 -1.7822 10 1 2.1058 2.3989 -3.6929 11 1 1.1987 2.3274 -1.4450 12 7 2.0184 -0.6906 1.1962 13 6 2.1471 -0.0182 2.3572 14 8 1.8582 1.1585 2.4116 15 6 2.6489 -0.7286 3.5878 16 6 2.7000 0.2544 4.7591 17 6 3.2100 -0.4667 6.0084 18 6 4.6128 -1.0167 5.7426 19 7 5.1023 -1.7096 6.9419 20 6 4.5618 -1.9997 4.5714 21 6 4.0517 -1.2787 3.3221 22 1 -0.3633 -1.0239 -0.0888 23 1 -0.3633 0.4350 0.9312 24 1 -0.3634 0.5888 -0.8422 25 1 2.9363 -0.1051 -4.2556 26 1 2.2491 -1.6317 1.1528 27 1 1.9759 -1.5504 3.8327 28 1 3.3726 1.0765 4.5144 29 1 1.7007 0.6466 4.9481 30 1 3.2468 0.2338 6.8426 31 1 2.5377 -1.2890 6.2531 32 1 5.2851 -0.1944 5.4979 33 1 5.1451 -1.0814 7.7304 34 1 4.5323 -2.5152 7.1520 35 1 3.8894 -2.8221 4.8162 36 1 5.5611 -2.3919 4.3824 37 1 4.0149 -1.9791 2.4878 38 1 4.7240 -0.4563 3.0773 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050392222.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:40 Heat of formation + Delta-G solvation = -70.973947 kcal Electronic energy + Delta-G solvation = -17745.661068 eV Core-core repulsion = 15007.362149 eV Total energy + Delta-G solvation = -2738.298919 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.79871 -37.88440 -34.89773 -33.60986 -32.32364 -30.82693 -29.87846 -27.96366 -25.31011 -22.91940 -22.66835 -20.77375 -19.92027 -19.40739 -17.43700 -16.21063 -16.03786 -15.47084 -15.26245 -14.43304 -14.20685 -14.05890 -13.56041 -13.28105 -12.75397 -12.65506 -12.49896 -12.27761 -12.14964 -11.44832 -11.33571 -11.23790 -11.13721 -11.06593 -10.80122 -10.56354 -10.50941 -10.24557 -9.87487 -9.19701 -9.01666 -8.83447 -8.69044 -8.05298 -6.23347 -4.26882 3.25462 3.32457 3.34206 3.41619 3.99970 4.32670 4.36148 4.59688 4.68948 5.04241 5.10420 5.15619 5.20156 5.33353 5.42201 5.44229 5.52614 5.74621 5.86496 5.98105 6.01403 6.14957 6.18420 6.32169 6.35076 6.42876 6.53023 6.68830 6.93982 6.95388 7.20106 7.22603 7.39491 7.58071 8.15397 8.60126 8.77438 9.02859 9.39173 10.88459 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.037969 B = 0.005610 C = 0.005379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.273238 B = 4989.998702 C = 5204.599442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.230 3.770 3 H 0.049 0.951 4 C -0.530 4.530 5 H 0.078 0.922 6 C 0.081 3.919 7 N -0.889 5.889 8 Si 0.874 3.126 9 H -0.273 1.273 10 H -0.286 1.286 11 H -0.261 1.261 12 N -0.703 5.703 13 C 0.503 3.497 14 O -0.562 6.562 15 C -0.108 4.108 16 C -0.094 4.094 17 C -0.151 4.151 18 C 0.087 3.913 19 N -0.847 5.847 20 C -0.108 4.108 21 C -0.110 4.110 22 H 0.046 0.954 23 H 0.028 0.972 24 H 0.051 0.949 25 H 0.268 0.732 26 H 0.392 0.608 27 H 0.090 0.910 28 H 0.070 0.930 29 H 0.067 0.933 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.081 0.919 33 H 0.339 0.661 34 H 0.338 0.662 35 H 0.061 0.939 36 H 0.072 0.928 37 H 0.075 0.925 38 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.709 -2.518 17.362 17.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.127 3.873 3 H 0.067 0.933 4 C -0.568 4.568 5 H 0.096 0.904 6 C -0.123 4.123 7 N -0.526 5.526 8 Si 0.701 3.299 9 H -0.199 1.199 10 H -0.212 1.212 11 H -0.185 1.185 12 N -0.351 5.351 13 C 0.289 3.711 14 O -0.441 6.441 15 C -0.129 4.129 16 C -0.132 4.132 17 C -0.190 4.190 18 C -0.024 4.024 19 N -0.374 5.374 20 C -0.146 4.146 21 C -0.149 4.149 22 H 0.065 0.935 23 H 0.047 0.953 24 H 0.070 0.930 25 H 0.077 0.923 26 H 0.226 0.774 27 H 0.108 0.892 28 H 0.088 0.912 29 H 0.086 0.914 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.099 0.901 33 H 0.151 0.849 34 H 0.150 0.850 35 H 0.080 0.920 36 H 0.091 0.909 37 H 0.093 0.907 38 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.241 -1.781 16.740 16.983 hybrid contribution -0.900 0.717 0.201 1.168 sum 1.341 -1.064 16.941 17.027 Atomic orbital electron populations 1.22214 0.98717 1.00492 0.99162 1.19116 0.90851 0.94355 0.82975 0.93302 1.21012 1.45177 0.95601 0.94985 0.90369 1.24933 0.93626 0.98593 0.95152 1.69879 1.44845 1.36182 1.01686 0.86893 0.79782 0.85910 0.77299 1.19874 1.21197 1.18544 1.46640 1.64773 1.13830 1.09898 1.20554 0.78212 0.87470 0.84908 1.90629 1.51819 1.16309 1.85368 1.21365 0.98135 0.99109 0.94307 1.21233 1.02204 0.97401 0.92396 1.22417 0.98025 1.00252 0.98342 1.21540 0.93815 0.96417 0.90662 1.58961 1.59039 1.12212 1.07225 1.21519 1.01772 0.97522 0.93762 1.21514 0.94858 1.00617 0.97890 0.93467 0.95313 0.92982 0.92253 0.77418 0.89233 0.91166 0.91413 0.92108 0.92155 0.90083 0.84902 0.85029 0.92043 0.90938 0.90664 0.91185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.27 9.47 37.16 0.35 -2.91 16 2 C 0.23 5.51 2.22 -69.08 -0.15 5.36 16 3 H 0.05 1.29 4.73 -51.93 -0.25 1.04 16 4 C -0.53 -14.26 9.05 -34.44 -0.31 -14.57 16 5 H 0.08 2.21 8.06 -52.49 -0.42 1.79 16 6 C 0.08 2.28 5.47 -17.82 -0.10 2.18 16 7 N -0.89 -26.22 13.96 55.43 0.77 -25.45 16 8 Si 0.87 21.74 26.99 -169.99 -4.59 17.16 16 9 H -0.27 -6.81 7.11 56.52 0.40 -6.41 16 10 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 11 H -0.26 -6.42 6.82 56.52 0.39 -6.04 16 12 N -0.70 -14.13 4.96 -54.93 -0.27 -14.40 16 13 C 0.50 9.61 7.12 -10.98 -0.08 9.53 16 14 O -0.56 -12.87 15.65 5.55 0.09 -12.78 16 15 C -0.11 -1.48 2.53 -91.77 -0.23 -1.72 16 16 C -0.09 -1.21 4.49 -26.73 -0.12 -1.33 16 17 C -0.15 -1.47 5.49 -26.73 -0.15 -1.62 16 18 C 0.09 0.85 3.25 -67.71 -0.22 0.63 16 19 N -0.85 -7.13 9.25 -4.67 -0.04 -7.17 16 20 C -0.11 -1.10 5.46 -26.73 -0.15 -1.25 16 21 C -0.11 -1.37 5.10 -26.73 -0.14 -1.51 16 22 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 23 H 0.03 0.60 8.14 -51.92 -0.42 0.18 16 24 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 25 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 26 H 0.39 6.95 8.01 -40.82 -0.33 6.63 16 27 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 28 H 0.07 1.00 8.10 -51.93 -0.42 0.58 16 29 H 0.07 0.93 8.10 -51.93 -0.42 0.51 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.55 8.14 -51.92 -0.42 0.13 16 32 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 33 H 0.34 2.39 9.04 -39.29 -0.36 2.04 16 34 H 0.34 2.45 8.98 -39.29 -0.35 2.10 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.07 0.93 7.56 -51.93 -0.39 0.54 16 38 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 303.79 15.07 4.58 4.58 Total: -1.00 -31.05 303.79 -7.07 -38.12 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: -6.32 Total: 7.17 kcal Atomic # 6 Polarization: -5.92 SS G_CDS: -1.29 Total: -7.21 kcal Atomic # 7 Polarization: -47.48 SS G_CDS: 0.46 Total: -47.02 kcal Atomic # 8 Polarization: -12.87 SS G_CDS: 0.09 Total: -12.78 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.59 Total: 17.16 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -31.05 -7.07 -38.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050392222.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.857 kcal (2) G-P(sol) polarization free energy of solvation -31.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds