Wall clock time and date at job start Mon Mar 30 2020 03:18:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47336 * 2 1 4 4 C 1.50702 * 109.47336 * 239.99732 * 2 1 3 5 5 H 1.08000 * 119.99680 * 275.00069 * 4 2 1 6 6 C 1.37872 * 120.00055 * 94.99732 * 4 2 1 7 7 N 1.31508 * 120.00190 * 184.91356 * 6 4 2 8 8 Si 1.86801 * 119.99962 * 4.92069 * 6 4 2 9 9 H 1.48503 * 109.47267 * 84.82787 * 8 6 4 10 10 H 1.48499 * 109.47288 * 204.82922 * 8 6 4 11 11 H 1.48499 * 109.47227 * 324.83373 * 8 6 4 12 12 N 1.46505 * 109.47246 * 119.99923 * 2 1 3 13 13 C 1.34780 * 119.99729 * 274.99742 * 12 2 1 14 14 O 1.21287 * 119.99969 * 0.02562 * 13 12 2 15 15 C 1.50701 * 120.00249 * 179.97438 * 13 12 2 16 16 C 1.52994 * 109.47554 * 180.02562 * 15 13 12 17 17 C 1.52998 * 109.47534 * 180.02562 * 16 15 13 18 18 C 1.53005 * 109.46741 * 59.99644 * 17 16 15 19 19 N 1.46899 * 109.46803 * 180.02562 * 18 17 16 20 20 C 1.52994 * 109.47397 * 300.00440 * 18 17 16 21 21 C 1.52998 * 109.47534 * 60.00046 * 20 18 17 22 22 H 1.09002 * 109.46808 * 175.04370 * 1 2 3 23 23 H 1.09008 * 109.46875 * 295.03731 * 1 2 3 24 24 H 1.08997 * 109.47608 * 55.04106 * 1 2 3 25 25 H 0.97000 * 120.00674 * 179.97438 * 7 6 4 26 26 H 0.96997 * 120.00619 * 94.99944 * 12 2 1 27 27 H 1.09007 * 109.46574 * 300.00515 * 15 13 12 28 28 H 1.08997 * 109.47214 * 300.00541 * 16 15 13 29 29 H 1.08998 * 109.47183 * 60.00070 * 16 15 13 30 30 H 1.08994 * 109.47291 * 179.97438 * 17 16 15 31 31 H 1.09007 * 109.46832 * 300.00742 * 17 16 15 32 32 H 1.08997 * 109.46548 * 60.00926 * 18 17 16 33 33 H 1.00906 * 111.00352 * 300.00399 * 19 18 17 34 34 H 1.00899 * 110.99867 * 63.95504 * 19 18 17 35 35 H 1.09007 * 109.46947 * 300.00014 * 20 18 17 36 36 H 1.08998 * 109.46731 * 180.02562 * 20 18 17 37 37 H 1.08994 * 109.47291 * 180.02562 * 21 20 18 38 38 H 1.08997 * 109.46843 * 59.99250 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.1355 -1.7855 -1.2289 6 6 2.3602 0.0120 -2.3580 7 7 2.7060 -0.6133 -3.4621 8 14 2.3135 1.8789 -2.3175 9 1 3.5991 2.3948 -1.7822 10 1 2.1058 2.3989 -3.6929 11 1 1.1987 2.3274 -1.4450 12 7 2.0184 -0.6906 1.1962 13 6 2.1471 -0.0182 2.3572 14 8 1.8582 1.1585 2.4116 15 6 2.6489 -0.7286 3.5878 16 6 2.7000 0.2544 4.7591 17 6 3.2100 -0.4667 6.0084 18 6 4.6128 -1.0167 5.7426 19 7 5.1023 -1.7096 6.9419 20 6 4.5618 -1.9997 4.5714 21 6 4.0517 -1.2787 3.3221 22 1 -0.3633 -1.0239 -0.0888 23 1 -0.3633 0.4350 0.9312 24 1 -0.3634 0.5888 -0.8422 25 1 2.9363 -0.1051 -4.2556 26 1 2.2491 -1.6317 1.1528 27 1 1.9759 -1.5504 3.8327 28 1 3.3726 1.0765 4.5144 29 1 1.7007 0.6466 4.9481 30 1 3.2468 0.2338 6.8426 31 1 2.5377 -1.2890 6.2531 32 1 5.2851 -0.1944 5.4979 33 1 5.1451 -1.0814 7.7304 34 1 4.5323 -2.5152 7.1520 35 1 3.8894 -2.8221 4.8162 36 1 5.5611 -2.3919 4.3824 37 1 4.0149 -1.9791 2.4878 38 1 4.7240 -0.4563 3.0773 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050392222.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:40 Heat of formation + Delta-G solvation = -94.094120 kcal Electronic energy + Delta-G solvation = -17746.663634 eV Core-core repulsion = 15007.362149 eV Total energy + Delta-G solvation = -2739.301485 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.14770 -39.06052 -36.71783 -34.66552 -34.27164 -31.91289 -31.41014 -28.99677 -27.34609 -24.18723 -23.61487 -22.23331 -21.21686 -20.77885 -19.25467 -17.80046 -17.20769 -16.95550 -16.31271 -15.97233 -15.54096 -15.09381 -15.02838 -14.57815 -14.43217 -14.33771 -13.87770 -13.49007 -13.21574 -13.10365 -12.98303 -12.80675 -12.49246 -12.36348 -12.09306 -12.06847 -11.89454 -11.46766 -11.26606 -11.13428 -10.86767 -10.55741 -9.79527 -9.52017 -8.40333 -6.46134 1.27056 1.31744 1.42233 1.79250 2.25336 2.48616 3.02498 3.56289 3.68303 3.75523 4.02026 4.16057 4.22637 4.38313 4.41427 4.49650 4.51273 4.54357 4.71565 4.80851 4.82269 4.94563 5.07099 5.11275 5.13300 5.22267 5.24944 5.35901 5.36776 5.44002 5.48522 5.76108 6.11944 6.30406 6.58733 6.68275 6.92360 7.20240 7.48698 8.74703 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.037969 B = 0.005610 C = 0.005379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.273238 B = 4989.998702 C = 5204.599442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.231 3.769 3 H 0.027 0.973 4 C -0.525 4.525 5 H 0.058 0.942 6 C 0.035 3.965 7 N -0.929 5.929 8 Si 0.925 3.075 9 H -0.276 1.276 10 H -0.276 1.276 11 H -0.259 1.259 12 N -0.703 5.703 13 C 0.500 3.500 14 O -0.601 6.601 15 C -0.095 4.095 16 C -0.092 4.092 17 C -0.139 4.139 18 C 0.091 3.909 19 N -0.849 5.849 20 C -0.100 4.100 21 C -0.107 4.107 22 H 0.058 0.942 23 H 0.036 0.964 24 H 0.046 0.954 25 H 0.271 0.729 26 H 0.405 0.595 27 H 0.117 0.883 28 H 0.049 0.951 29 H 0.057 0.943 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.067 0.933 33 H 0.348 0.652 34 H 0.347 0.653 35 H 0.078 0.922 36 H 0.072 0.928 37 H 0.075 0.925 38 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.566 -3.101 19.423 19.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.127 3.873 3 H 0.045 0.955 4 C -0.563 4.563 5 H 0.076 0.924 6 C -0.166 4.166 7 N -0.568 5.568 8 Si 0.750 3.250 9 H -0.201 1.201 10 H -0.201 1.201 11 H -0.183 1.183 12 N -0.352 5.352 13 C 0.287 3.713 14 O -0.483 6.483 15 C -0.117 4.117 16 C -0.131 4.131 17 C -0.178 4.178 18 C -0.021 4.021 19 N -0.378 5.378 20 C -0.138 4.138 21 C -0.146 4.146 22 H 0.077 0.923 23 H 0.055 0.945 24 H 0.065 0.935 25 H 0.080 0.920 26 H 0.240 0.760 27 H 0.135 0.865 28 H 0.068 0.932 29 H 0.076 0.924 30 H 0.090 0.910 31 H 0.094 0.906 32 H 0.085 0.915 33 H 0.161 0.839 34 H 0.160 0.840 35 H 0.097 0.903 36 H 0.091 0.909 37 H 0.094 0.906 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.102 -2.390 18.829 19.096 hybrid contribution -0.847 0.855 -0.395 1.267 sum 1.255 -1.535 18.434 18.540 Atomic orbital electron populations 1.22103 0.97189 1.01259 0.99347 1.18884 0.91964 0.93078 0.83363 0.95495 1.21186 1.44267 0.94823 0.96068 0.92392 1.25569 0.93796 1.02190 0.95011 1.69967 1.46679 1.37679 1.02433 0.86081 0.79552 0.81681 0.77648 1.20128 1.20125 1.18301 1.46413 1.64997 1.14398 1.09349 1.21462 0.76943 0.87087 0.85760 1.90609 1.53377 1.18288 1.86072 1.21371 0.99161 0.99469 0.91653 1.21213 1.01338 0.96984 0.93549 1.22340 0.98069 1.00614 0.96798 1.21415 0.93527 0.95988 0.91169 1.58908 1.59112 1.12651 1.07124 1.21453 1.02028 0.97715 0.92626 1.21492 0.93584 1.00183 0.99326 0.92268 0.94527 0.93504 0.92006 0.75972 0.86513 0.93204 0.92423 0.90986 0.90553 0.91480 0.83887 0.83962 0.90310 0.90937 0.90644 0.92949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.08 9.47 71.98 0.68 -5.40 16 2 C 0.23 11.01 2.22 44.24 0.10 11.11 16 3 H 0.03 1.42 4.73 -2.39 -0.01 1.41 16 4 C -0.53 -28.41 9.05 25.60 0.23 -28.18 16 5 H 0.06 3.31 8.06 -2.91 -0.02 3.29 16 6 C 0.03 1.97 5.47 84.65 0.46 2.43 16 7 N -0.93 -55.35 13.96 21.44 0.30 -55.05 16 8 Si 0.93 45.04 26.99 68.60 1.85 46.89 16 9 H -0.28 -13.41 7.11 99.48 0.71 -12.71 16 10 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 11 H -0.26 -12.39 6.82 99.48 0.68 -11.71 16 12 N -0.70 -27.71 4.96 -446.08 -2.21 -29.92 16 13 C 0.50 18.67 7.12 87.66 0.62 19.29 16 14 O -0.60 -27.51 15.65 -3.05 -0.05 -27.55 16 15 C -0.10 -2.46 2.53 -11.54 -0.03 -2.49 16 16 C -0.09 -2.24 4.49 30.59 0.14 -2.10 16 17 C -0.14 -2.30 5.49 30.60 0.17 -2.13 16 18 C 0.09 1.54 3.25 44.92 0.15 1.68 16 19 N -0.85 -11.69 9.25 -168.68 -1.56 -13.25 16 20 C -0.10 -1.78 5.46 30.59 0.17 -1.62 16 21 C -0.11 -2.49 5.10 30.60 0.16 -2.34 16 22 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 23 H 0.04 1.50 8.14 -2.38 -0.02 1.48 16 24 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 25 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 26 H 0.40 13.92 8.01 -92.71 -0.74 13.17 16 27 H 0.12 2.44 8.14 -2.38 -0.02 2.42 16 28 H 0.05 1.40 8.10 -2.39 -0.02 1.39 16 29 H 0.06 1.52 8.10 -2.39 -0.02 1.50 16 30 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.08 1.07 8.14 -2.38 -0.02 1.05 16 32 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.35 3.87 9.04 -89.69 -0.81 3.06 16 34 H 0.35 3.78 8.98 -89.69 -0.81 2.97 16 35 H 0.08 1.17 8.14 -2.38 -0.02 1.15 16 36 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.07 1.74 7.56 -2.39 -0.02 1.73 16 38 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -66.59 303.79 -0.15 -66.74 By element: Atomic # 1 Polarization: 23.19 SS G_CDS: -1.32 Total: 21.87 kcal Atomic # 6 Polarization: -12.57 SS G_CDS: 2.84 Total: -9.73 kcal Atomic # 7 Polarization: -94.74 SS G_CDS: -3.47 Total: -98.21 kcal Atomic # 8 Polarization: -27.51 SS G_CDS: -0.05 Total: -27.55 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 1.85 Total: 46.89 kcal Total: -66.59 -0.15 -66.74 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050392222.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.357 kcal (2) G-P(sol) polarization free energy of solvation -66.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds