Wall clock time and date at job start Mon Mar 30 2020 03:23:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08993 * 109.46955 * 2 1 4 4 C 1.50698 * 109.47184 * 120.00158 * 2 1 3 5 5 H 1.07993 * 120.00472 * 119.99561 * 4 2 1 6 6 C 1.37884 * 119.99909 * 299.99693 * 4 2 1 7 7 N 1.31522 * 119.99817 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00071 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.46971 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.46790 * 119.99973 * 8 6 4 11 11 H 1.48501 * 109.47046 * 239.99648 * 8 6 4 12 12 N 1.46500 * 109.46998 * 239.99774 * 2 1 3 13 13 C 1.34773 * 119.99910 * 84.99768 * 12 2 1 14 14 O 1.21279 * 120.00033 * 0.02562 * 13 12 2 15 15 C 1.50699 * 119.99928 * 180.02562 * 13 12 2 16 16 N 1.46899 * 109.47268 * 180.02562 * 15 13 12 17 17 C 1.46903 * 111.00156 * 179.97438 * 16 15 13 18 18 C 1.54262 * 110.03340 * 272.90501 * 17 16 15 19 19 C 1.54965 * 104.16151 * 217.13597 * 18 17 16 20 20 C 1.54880 * 102.77631 * 37.88797 * 19 18 17 21 21 C 1.53878 * 110.03169 * 155.68917 * 17 16 15 22 22 H 1.09000 * 109.47050 * 60.00171 * 1 2 3 23 23 H 1.09001 * 109.46801 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46998 * 299.99880 * 1 2 3 25 25 H 0.96991 * 120.00052 * 179.97438 * 7 6 4 26 26 H 0.97003 * 119.99995 * 265.00643 * 12 2 1 27 27 H 1.08999 * 109.47104 * 300.00397 * 15 13 12 28 28 H 1.09000 * 109.47712 * 60.00108 * 15 13 12 29 29 H 1.00904 * 110.99676 * 303.95280 * 16 15 13 30 30 H 1.09004 * 110.01686 * 34.29857 * 17 16 15 31 31 H 1.09002 * 110.48523 * 335.78761 * 18 17 16 32 32 H 1.09001 * 110.48316 * 98.42447 * 18 17 16 33 33 H 1.09003 * 110.71774 * 279.57427 * 19 18 17 34 34 H 1.08997 * 110.91794 * 156.29594 * 19 18 17 35 35 H 1.08996 * 110.49019 * 203.40480 * 20 19 18 36 36 H 1.09010 * 110.60150 * 80.81608 * 20 19 18 37 37 H 1.09003 * 110.03128 * 238.57044 * 21 17 16 38 38 H 1.09002 * 110.03130 * 359.97438 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1314 6 6 1.6994 -0.2393 2.4828 7 7 0.9428 0.8297 2.6034 8 14 2.3226 -1.1195 4.0080 9 1 3.1485 -2.2856 3.6038 10 1 3.1474 -0.1857 4.8160 11 1 1.1679 -1.5864 4.8166 12 7 2.0184 -0.6907 -1.1962 13 6 2.1470 -0.0184 -2.3571 14 8 1.8590 1.1585 -2.4115 15 6 2.6488 -0.7290 -3.5877 16 7 2.6988 0.2151 -4.7121 17 6 3.1851 -0.4440 -5.9316 18 6 4.7262 -0.3953 -5.9800 19 6 5.0518 -0.1784 -7.4794 20 6 3.9338 0.7913 -7.9359 21 6 2.6813 0.3098 -7.1749 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 0.7082 1.1609 3.4843 26 1 2.2490 -1.6319 -1.1526 27 1 3.6479 -1.1215 -3.3986 28 1 1.9759 -1.5508 -3.8326 29 1 1.7976 0.6419 -4.8662 30 1 2.8432 -1.4787 -5.9583 31 1 5.1005 0.4372 -5.3841 32 1 5.1488 -1.3369 -5.6293 33 1 4.9943 -1.1194 -8.0265 34 1 6.0337 0.2788 -7.6022 35 1 3.7788 0.7154 -9.0121 36 1 4.1782 1.8166 -7.6580 37 1 2.0955 -0.3592 -7.8053 38 1 2.0755 1.1644 -6.8733 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050392408.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:04 Heat of formation + Delta-G solvation = -54.473482 kcal Electronic energy + Delta-G solvation = -17134.482876 eV Core-core repulsion = 14396.899470 eV Total energy + Delta-G solvation = -2737.583406 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.12017 -38.15840 -34.88120 -33.88641 -32.32662 -29.42762 -28.80771 -27.72583 -25.26196 -24.71922 -21.11170 -20.70186 -20.00995 -19.31113 -17.15929 -16.19166 -15.83688 -15.42767 -15.13665 -14.96677 -14.32569 -13.91588 -13.49299 -13.32474 -12.93728 -12.41613 -12.00665 -11.72487 -11.48445 -11.23313 -11.17905 -11.13840 -11.05160 -10.94428 -10.83229 -10.69963 -10.68090 -10.28264 -10.22601 -9.02123 -8.94520 -8.53756 -8.29859 -7.85290 -6.10653 -4.19741 3.24635 3.32243 3.35010 3.46877 3.88454 4.33219 4.43151 4.54295 4.60838 4.87055 5.21485 5.25752 5.35357 5.39339 5.47371 5.51312 5.55824 5.64380 5.70277 5.77527 5.83373 5.93662 6.06672 6.10258 6.30809 6.83743 6.98016 7.07856 7.17796 7.46871 7.51704 7.60562 7.72754 7.94707 8.17384 8.71776 8.81820 9.19559 9.48178 10.95425 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.052672 B = 0.004109 C = 0.003940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 531.462892 B = 6813.357937 C = 7104.027106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.264 3.736 3 H 0.048 0.952 4 C -0.532 4.532 5 H 0.061 0.939 6 C 0.065 3.935 7 N -0.884 5.884 8 Si 0.902 3.098 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.712 5.712 13 C 0.499 3.501 14 O -0.543 6.543 15 C 0.039 3.961 16 N -0.665 5.665 17 C 0.081 3.919 18 C -0.117 4.117 19 C -0.124 4.124 20 C -0.120 4.120 21 C -0.127 4.127 22 H 0.014 0.986 23 H 0.025 0.975 24 H 0.090 0.910 25 H 0.263 0.737 26 H 0.387 0.613 27 H 0.094 0.906 28 H 0.051 0.949 29 H 0.350 0.650 30 H 0.044 0.956 31 H 0.080 0.920 32 H 0.059 0.941 33 H 0.062 0.938 34 H 0.065 0.935 35 H 0.061 0.939 36 H 0.068 0.932 37 H 0.063 0.937 38 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.513 -5.080 -17.097 18.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.162 3.838 3 H 0.066 0.934 4 C -0.571 4.571 5 H 0.080 0.920 6 C -0.138 4.138 7 N -0.521 5.521 8 Si 0.729 3.271 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.361 5.361 13 C 0.283 3.717 14 O -0.421 6.421 15 C -0.094 4.094 16 N -0.299 5.299 17 C -0.028 4.028 18 C -0.155 4.155 19 C -0.162 4.162 20 C -0.158 4.158 21 C -0.165 4.165 22 H 0.033 0.967 23 H 0.044 0.956 24 H 0.108 0.892 25 H 0.073 0.927 26 H 0.219 0.781 27 H 0.112 0.888 28 H 0.069 0.931 29 H 0.170 0.830 30 H 0.062 0.938 31 H 0.099 0.901 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.087 0.913 37 H 0.081 0.919 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 4.808 -3.849 -16.783 17.877 hybrid contribution -0.401 -1.536 0.728 1.746 sum 4.407 -5.384 -16.054 17.497 Atomic orbital electron populations 1.22074 0.98575 0.98995 1.00847 1.18725 0.90930 0.94041 0.80070 0.93377 1.21269 1.32300 1.13161 0.90363 0.92048 1.24903 0.94846 0.94968 0.99081 1.69917 1.35961 1.22510 1.23739 0.86391 0.78587 0.79519 0.82581 1.19748 1.20865 1.20900 1.46508 1.65474 1.13482 1.10606 1.20344 0.78885 0.87701 0.84750 1.90654 1.50619 1.15842 1.85012 1.21905 1.01965 0.94195 0.91313 1.60306 1.34486 1.31669 1.03436 1.22220 0.95795 0.95766 0.89064 1.22476 0.94663 1.02146 0.96202 1.22486 0.98498 0.99125 0.96124 1.22284 0.94804 0.99618 0.99075 1.22341 0.98107 1.00147 0.95898 0.96737 0.95568 0.89174 0.92652 0.78067 0.88773 0.93100 0.83003 0.93786 0.90084 0.92180 0.91886 0.91620 0.92039 0.91330 0.91852 0.90869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.69 9.26 37.16 0.34 -3.35 16 2 C 0.26 6.84 2.56 -69.08 -0.18 6.67 16 3 H 0.05 1.45 7.58 -51.93 -0.39 1.05 16 4 C -0.53 -14.29 8.73 -34.44 -0.30 -14.59 16 5 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 6 C 0.06 1.77 5.30 -17.81 -0.09 1.67 16 7 N -0.88 -25.18 11.32 55.43 0.63 -24.56 16 8 Si 0.90 20.79 29.54 -169.99 -5.02 15.77 16 9 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 12 N -0.71 -15.00 5.07 -54.93 -0.28 -15.28 16 13 C 0.50 10.09 7.83 -10.99 -0.09 10.00 16 14 O -0.54 -13.28 15.86 5.56 0.09 -13.19 16 15 C 0.04 0.57 5.99 -4.98 -0.03 0.54 16 16 N -0.67 -9.51 5.88 -106.81 -0.63 -10.14 16 17 C 0.08 0.91 3.24 -66.59 -0.22 0.70 16 18 C -0.12 -1.24 6.47 -25.03 -0.16 -1.40 16 19 C -0.12 -1.09 6.91 -24.70 -0.17 -1.26 16 20 C -0.12 -1.07 6.83 -25.08 -0.17 -1.24 16 21 C -0.13 -1.24 6.48 -25.61 -0.17 -1.40 16 22 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 23 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.09 2.47 6.07 -51.93 -0.32 2.15 16 25 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 26 H 0.39 7.00 8.54 -40.82 -0.35 6.65 16 27 H 0.09 1.27 8.12 -51.93 -0.42 0.85 16 28 H 0.05 0.65 8.07 -51.93 -0.42 0.23 16 29 H 0.35 5.16 7.73 -39.29 -0.30 4.85 16 30 H 0.04 0.47 7.82 -51.93 -0.41 0.06 16 31 H 0.08 1.01 8.05 -51.93 -0.42 0.59 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.07 0.65 8.14 -51.92 -0.42 0.22 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.07 0.76 7.48 -51.93 -0.39 0.37 16 LS Contribution 309.24 15.07 4.66 4.66 Total: -1.00 -30.64 309.24 -8.12 -38.76 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: -6.34 Total: 7.64 kcal Atomic # 6 Polarization: -2.43 SS G_CDS: -1.23 Total: -3.66 kcal Atomic # 7 Polarization: -49.69 SS G_CDS: -0.28 Total: -49.97 kcal Atomic # 8 Polarization: -13.28 SS G_CDS: 0.09 Total: -13.19 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -30.64 -8.12 -38.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050392408.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.718 kcal (2) G-P(sol) polarization free energy of solvation -30.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds