Wall clock time and date at job start Mon Mar 30 2020 03:23:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08993 * 109.46955 * 2 1 4 4 C 1.50698 * 109.47184 * 120.00158 * 2 1 3 5 5 H 1.07993 * 120.00472 * 119.99561 * 4 2 1 6 6 C 1.37884 * 119.99909 * 299.99693 * 4 2 1 7 7 N 1.31522 * 119.99817 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00071 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.46971 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.46790 * 119.99973 * 8 6 4 11 11 H 1.48501 * 109.47046 * 239.99648 * 8 6 4 12 12 N 1.46500 * 109.46998 * 239.99774 * 2 1 3 13 13 C 1.34773 * 119.99910 * 84.99768 * 12 2 1 14 14 O 1.21279 * 120.00033 * 0.02562 * 13 12 2 15 15 C 1.50699 * 119.99928 * 180.02562 * 13 12 2 16 16 N 1.46899 * 109.47268 * 180.02562 * 15 13 12 17 17 C 1.46903 * 111.00156 * 179.97438 * 16 15 13 18 18 C 1.54262 * 110.03340 * 272.90501 * 17 16 15 19 19 C 1.54965 * 104.16151 * 217.13597 * 18 17 16 20 20 C 1.54880 * 102.77631 * 37.88797 * 19 18 17 21 21 C 1.53878 * 110.03169 * 155.68917 * 17 16 15 22 22 H 1.09000 * 109.47050 * 60.00171 * 1 2 3 23 23 H 1.09001 * 109.46801 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46998 * 299.99880 * 1 2 3 25 25 H 0.96991 * 120.00052 * 179.97438 * 7 6 4 26 26 H 0.97003 * 119.99995 * 265.00643 * 12 2 1 27 27 H 1.08999 * 109.47104 * 300.00397 * 15 13 12 28 28 H 1.09000 * 109.47712 * 60.00108 * 15 13 12 29 29 H 1.00904 * 110.99676 * 303.95280 * 16 15 13 30 30 H 1.09004 * 110.01686 * 34.29857 * 17 16 15 31 31 H 1.09002 * 110.48523 * 335.78761 * 18 17 16 32 32 H 1.09001 * 110.48316 * 98.42447 * 18 17 16 33 33 H 1.09003 * 110.71774 * 279.57427 * 19 18 17 34 34 H 1.08997 * 110.91794 * 156.29594 * 19 18 17 35 35 H 1.08996 * 110.49019 * 203.40480 * 20 19 18 36 36 H 1.09010 * 110.60150 * 80.81608 * 20 19 18 37 37 H 1.09003 * 110.03128 * 238.57044 * 21 17 16 38 38 H 1.09002 * 110.03130 * 359.97438 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1314 6 6 1.6994 -0.2393 2.4828 7 7 0.9428 0.8297 2.6034 8 14 2.3226 -1.1195 4.0080 9 1 3.1485 -2.2856 3.6038 10 1 3.1474 -0.1857 4.8160 11 1 1.1679 -1.5864 4.8166 12 7 2.0184 -0.6907 -1.1962 13 6 2.1470 -0.0184 -2.3571 14 8 1.8590 1.1585 -2.4115 15 6 2.6488 -0.7290 -3.5877 16 7 2.6988 0.2151 -4.7121 17 6 3.1851 -0.4440 -5.9316 18 6 4.7262 -0.3953 -5.9800 19 6 5.0518 -0.1784 -7.4794 20 6 3.9338 0.7913 -7.9359 21 6 2.6813 0.3098 -7.1749 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 0.7082 1.1609 3.4843 26 1 2.2490 -1.6319 -1.1526 27 1 3.6479 -1.1215 -3.3986 28 1 1.9759 -1.5508 -3.8326 29 1 1.7976 0.6419 -4.8662 30 1 2.8432 -1.4787 -5.9583 31 1 5.1005 0.4372 -5.3841 32 1 5.1488 -1.3369 -5.6293 33 1 4.9943 -1.1194 -8.0265 34 1 6.0337 0.2788 -7.6022 35 1 3.7788 0.7154 -9.0121 36 1 4.1782 1.8166 -7.6580 37 1 2.0955 -0.3592 -7.8053 38 1 2.0755 1.1644 -6.8733 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050392408.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:03 Heat of formation + Delta-G solvation = -76.077637 kcal Electronic energy + Delta-G solvation = -17135.419702 eV Core-core repulsion = 14396.899470 eV Total energy + Delta-G solvation = -2738.520232 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.61874 -39.20946 -36.73812 -35.04123 -34.28866 -31.20049 -29.62093 -28.87007 -27.34785 -25.91551 -22.88141 -21.55329 -21.12873 -20.80823 -18.90206 -17.54820 -17.29824 -16.78162 -16.67293 -16.09363 -15.87084 -15.13478 -14.82836 -14.56750 -14.32628 -14.13339 -13.68921 -13.28995 -12.99085 -12.82600 -12.73764 -12.43448 -12.28011 -12.12080 -11.97452 -11.94777 -11.86031 -11.67649 -11.39552 -11.09540 -10.69376 -10.55266 -9.73225 -9.34138 -8.17697 -6.35377 1.44426 1.45354 1.57642 1.86045 2.33573 2.55596 3.12587 3.33680 3.69158 3.79808 4.02014 4.12845 4.35993 4.44736 4.51399 4.63666 4.64531 4.75010 4.84452 4.87891 4.91378 5.01347 5.09512 5.11190 5.21069 5.29734 5.32628 5.43738 5.54569 5.62046 5.69458 5.90286 6.10409 6.11138 6.39709 6.73377 7.01596 7.32896 7.60515 8.88939 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.052672 B = 0.004109 C = 0.003940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 531.462892 B = 6813.357937 C = 7104.027106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.269 3.731 3 H -0.005 1.005 4 C -0.546 4.546 5 H 0.074 0.926 6 C 0.012 3.988 7 N -0.919 5.919 8 Si 0.974 3.026 9 H -0.259 1.259 10 H -0.284 1.284 11 H -0.278 1.278 12 N -0.707 5.707 13 C 0.494 3.506 14 O -0.592 6.592 15 C 0.055 3.945 16 N -0.685 5.685 17 C 0.080 3.920 18 C -0.119 4.119 19 C -0.119 4.119 20 C -0.120 4.120 21 C -0.127 4.127 22 H 0.011 0.989 23 H 0.041 0.959 24 H 0.065 0.935 25 H 0.265 0.735 26 H 0.405 0.595 27 H 0.113 0.887 28 H 0.082 0.918 29 H 0.344 0.656 30 H 0.059 0.941 31 H 0.056 0.944 32 H 0.069 0.931 33 H 0.078 0.922 34 H 0.070 0.930 35 H 0.078 0.922 36 H 0.056 0.944 37 H 0.080 0.920 38 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.382 -7.477 -18.095 20.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.166 3.834 3 H 0.013 0.987 4 C -0.584 4.584 5 H 0.092 0.908 6 C -0.188 4.188 7 N -0.557 5.557 8 Si 0.799 3.201 9 H -0.183 1.183 10 H -0.210 1.210 11 H -0.204 1.204 12 N -0.357 5.357 13 C 0.281 3.719 14 O -0.473 6.473 15 C -0.077 4.077 16 N -0.318 5.318 17 C -0.029 4.029 18 C -0.157 4.157 19 C -0.157 4.157 20 C -0.158 4.158 21 C -0.165 4.165 22 H 0.030 0.970 23 H 0.060 0.940 24 H 0.084 0.916 25 H 0.074 0.926 26 H 0.240 0.760 27 H 0.131 0.869 28 H 0.100 0.900 29 H 0.163 0.837 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.088 0.912 33 H 0.097 0.903 34 H 0.089 0.911 35 H 0.097 0.903 36 H 0.075 0.925 37 H 0.098 0.902 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 5.698 -6.291 -17.815 19.733 hybrid contribution -0.670 -0.736 0.991 1.405 sum 5.029 -7.027 -16.823 18.913 Atomic orbital electron populations 1.21886 0.98308 0.99439 0.99486 1.18324 0.91120 0.91849 0.82142 0.98705 1.21595 1.32496 1.13528 0.90810 0.90774 1.25842 0.94890 0.95601 1.02445 1.70068 1.37080 1.24029 1.24548 0.85263 0.78086 0.78500 0.78267 1.18257 1.21026 1.20376 1.46262 1.65487 1.14230 1.09741 1.21346 0.77501 0.87261 0.85801 1.90632 1.52522 1.18268 1.85841 1.21805 1.03205 0.94091 0.88596 1.60328 1.34368 1.32474 1.04637 1.22345 0.96011 0.96390 0.88124 1.22482 0.94294 1.01631 0.97315 1.22477 0.98615 0.99818 0.94762 1.22297 0.94480 0.99016 1.00015 1.22355 0.98497 0.99955 0.95643 0.96988 0.93997 0.91598 0.92568 0.75988 0.86913 0.90009 0.83651 0.92326 0.92511 0.91227 0.90316 0.91146 0.90334 0.92523 0.90160 0.92086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.81 9.26 71.98 0.67 -6.14 16 2 C 0.27 14.24 2.56 44.25 0.11 14.35 16 3 H 0.00 -0.31 7.58 -2.39 -0.02 -0.33 16 4 C -0.55 -29.21 8.73 25.60 0.22 -28.99 16 5 H 0.07 3.69 7.74 -2.91 -0.02 3.67 16 6 C 0.01 0.65 5.30 84.66 0.45 1.10 16 7 N -0.92 -53.40 11.32 21.45 0.24 -53.15 16 8 Si 0.97 42.23 29.54 68.60 2.03 44.26 16 9 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 10 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 11 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 12 N -0.71 -29.52 5.07 -446.10 -2.26 -31.78 16 13 C 0.49 19.89 7.83 87.66 0.69 20.57 16 14 O -0.59 -29.78 15.86 -3.03 -0.05 -29.83 16 15 C 0.06 1.52 5.99 85.56 0.51 2.03 16 16 N -0.68 -18.85 5.88 -491.83 -2.89 -21.75 16 17 C 0.08 1.63 3.24 45.64 0.15 1.78 16 18 C -0.12 -2.31 6.47 31.69 0.20 -2.10 16 19 C -0.12 -1.80 6.91 31.91 0.22 -1.58 16 20 C -0.12 -1.91 6.83 31.67 0.22 -1.70 16 21 C -0.13 -2.24 6.48 31.32 0.20 -2.03 16 22 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 23 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 24 H 0.07 3.71 6.07 -2.39 -0.01 3.70 16 25 H 0.27 14.51 8.31 -92.71 -0.77 13.74 16 26 H 0.41 13.94 8.54 -92.71 -0.79 13.15 16 27 H 0.11 2.73 8.12 -2.39 -0.02 2.71 16 28 H 0.08 1.80 8.07 -2.39 -0.02 1.78 16 29 H 0.34 10.06 7.73 -89.69 -0.69 9.36 16 30 H 0.06 1.04 7.82 -2.38 -0.02 1.02 16 31 H 0.06 1.38 8.05 -2.39 -0.02 1.36 16 32 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.06 1.02 8.14 -2.38 -0.02 1.01 16 37 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.06 1.23 7.48 -2.39 -0.02 1.21 16 Total: -1.00 -67.68 309.24 0.27 -67.41 By element: Atomic # 1 Polarization: 28.00 SS G_CDS: -0.44 Total: 27.56 kcal Atomic # 6 Polarization: -6.37 SS G_CDS: 3.64 Total: -2.72 kcal Atomic # 7 Polarization: -101.77 SS G_CDS: -4.91 Total: -106.68 kcal Atomic # 8 Polarization: -29.78 SS G_CDS: -0.05 Total: -29.83 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 2.03 Total: 44.26 kcal Total: -67.68 0.27 -67.41 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050392408.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.667 kcal (2) G-P(sol) polarization free energy of solvation -67.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds