Wall clock time and date at job start Mon Mar 30 2020 03:23:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.47057 * 2 1 4 4 C 1.50696 * 109.47712 * 239.99735 * 2 1 3 5 5 H 1.07999 * 120.00319 * 240.00495 * 4 2 1 6 6 C 1.37885 * 119.99717 * 59.99878 * 4 2 1 7 7 N 1.31516 * 119.99913 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 0.02562 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46506 * 109.47074 * 119.99711 * 2 1 3 13 13 C 1.34781 * 120.00067 * 275.00178 * 12 2 1 14 14 O 1.21281 * 119.99724 * 359.97438 * 13 12 2 15 15 C 1.50697 * 119.99965 * 179.97438 * 13 12 2 16 16 N 1.46899 * 109.46928 * 179.97438 * 15 13 12 17 17 C 1.46898 * 110.99684 * 180.02562 * 16 15 13 18 18 C 1.54264 * 110.03486 * 272.91095 * 17 16 15 19 19 C 1.54967 * 104.15922 * 217.13722 * 18 17 16 20 20 C 1.54892 * 102.77799 * 37.88891 * 19 18 17 21 21 C 1.53878 * 110.03286 * 155.69385 * 17 16 15 22 22 H 1.08996 * 109.47024 * 300.00143 * 1 2 3 23 23 H 1.08998 * 109.46637 * 59.99843 * 1 2 3 24 24 H 1.08997 * 109.46749 * 180.02562 * 1 2 3 25 25 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 26 26 H 0.97000 * 119.99972 * 95.00133 * 12 2 1 27 27 H 1.08996 * 109.47441 * 300.00678 * 15 13 12 28 28 H 1.09005 * 109.46714 * 60.00041 * 15 13 12 29 29 H 1.00893 * 110.99843 * 303.95657 * 16 15 13 30 30 H 1.09007 * 110.01769 * 34.30424 * 17 16 15 31 31 H 1.08993 * 110.48541 * 335.78418 * 18 17 16 32 32 H 1.09001 * 110.48735 * 98.43219 * 18 17 16 33 33 H 1.09000 * 110.72150 * 279.56748 * 19 18 17 34 34 H 1.09000 * 110.92059 * 156.29604 * 19 18 17 35 35 H 1.08995 * 110.48378 * 203.40647 * 20 19 18 36 36 H 1.08997 * 110.59655 * 80.81484 * 20 19 18 37 37 H 1.09002 * 110.03344 * 238.57268 * 21 17 16 38 38 H 1.09006 * 110.02875 * 359.97438 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7104 -1.2303 5 1 2.6533 -1.5885 -1.1312 6 6 1.6994 -0.2394 -2.4827 7 7 2.1375 -0.8596 -3.5565 8 14 0.6260 1.2797 -2.6541 9 1 -0.8019 0.8744 -2.6994 10 1 0.8491 2.1773 -1.4922 11 1 0.9774 1.9953 -3.9070 12 7 2.0183 -0.6906 1.1963 13 6 2.1470 -0.0182 2.3572 14 8 1.8590 1.1587 2.4115 15 6 2.6488 -0.7287 3.5879 16 7 2.6989 0.2155 4.7121 17 6 3.1852 -0.4435 5.9316 18 6 2.0073 -1.0929 6.6871 19 6 2.3482 -0.8719 8.1825 20 6 2.9730 0.5454 8.1857 21 6 3.7993 0.5974 6.8841 22 1 -0.3633 0.5138 0.8899 23 1 -0.3632 0.5139 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.9028 -0.5285 -4.4375 26 1 2.2491 -1.6317 1.1527 27 1 1.9760 -1.5505 3.8327 28 1 3.6480 -1.1212 3.3987 29 1 3.2657 1.0186 4.4848 30 1 3.9275 -1.1998 5.6764 31 1 1.0708 -0.5969 6.4321 32 1 1.9500 -2.1577 6.4614 33 1 3.0694 -1.6129 8.5273 34 1 1.4470 -0.8982 8.7951 35 1 3.6196 0.6752 9.0535 36 1 2.1942 1.3078 8.1739 37 1 4.8393 0.3458 7.0918 38 1 3.7368 1.5915 6.4412 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050392410.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:06 Heat of formation + Delta-G solvation = -46.382990 kcal Electronic energy + Delta-G solvation = -17203.308642 eV Core-core repulsion = 14466.076066 eV Total energy + Delta-G solvation = -2737.232576 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.26825 -38.27556 -35.09683 -33.98178 -32.35948 -30.15442 -28.89668 -27.98521 -25.25296 -24.80497 -21.20480 -20.76134 -20.06976 -19.51493 -17.29469 -16.23533 -16.10029 -15.67570 -15.25221 -15.04231 -14.47096 -13.90740 -13.66618 -13.41641 -13.04333 -12.76920 -12.24384 -12.17406 -11.78598 -11.56462 -11.27722 -11.21882 -11.18520 -11.16857 -10.88671 -10.79604 -10.73365 -10.16975 -9.68523 -9.21385 -9.07482 -8.74564 -8.39691 -8.09934 -6.20294 -4.22657 3.24522 3.29626 3.36556 3.41853 3.74560 4.32801 4.35353 4.46045 4.52218 4.81988 5.14685 5.21369 5.28037 5.33377 5.40639 5.42155 5.51425 5.55116 5.62437 5.72805 5.78338 5.89193 6.01350 6.05357 6.25116 6.34165 6.41563 6.59492 6.87801 7.00457 7.23853 7.33046 7.40572 7.54909 8.18245 8.56080 8.77246 8.99474 9.41071 10.91916 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.057772 B = 0.004267 C = 0.004198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 484.548376 B = 6561.149310 C = 6668.022902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.237 3.763 3 H 0.047 0.953 4 C -0.535 4.535 5 H 0.079 0.921 6 C 0.077 3.923 7 N -0.894 5.894 8 Si 0.887 3.113 9 H -0.276 1.276 10 H -0.262 1.262 11 H -0.294 1.294 12 N -0.704 5.704 13 C 0.501 3.499 14 O -0.545 6.545 15 C 0.039 3.961 16 N -0.666 5.666 17 C 0.081 3.919 18 C -0.116 4.116 19 C -0.125 4.125 20 C -0.120 4.120 21 C -0.127 4.127 22 H 0.036 0.964 23 H 0.046 0.954 24 H 0.052 0.948 25 H 0.267 0.733 26 H 0.394 0.606 27 H 0.096 0.904 28 H 0.055 0.945 29 H 0.350 0.650 30 H 0.046 0.954 31 H 0.080 0.920 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.065 0.935 35 H 0.061 0.939 36 H 0.068 0.932 37 H 0.063 0.937 38 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.908 -1.251 20.095 20.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.134 3.866 3 H 0.065 0.935 4 C -0.573 4.573 5 H 0.097 0.903 6 C -0.126 4.126 7 N -0.531 5.531 8 Si 0.716 3.284 9 H -0.203 1.203 10 H -0.187 1.187 11 H -0.222 1.222 12 N -0.353 5.353 13 C 0.286 3.714 14 O -0.422 6.422 15 C -0.093 4.093 16 N -0.300 5.300 17 C -0.029 4.029 18 C -0.155 4.155 19 C -0.162 4.162 20 C -0.158 4.158 21 C -0.165 4.165 22 H 0.055 0.945 23 H 0.065 0.935 24 H 0.071 0.929 25 H 0.077 0.923 26 H 0.227 0.773 27 H 0.114 0.886 28 H 0.073 0.927 29 H 0.170 0.830 30 H 0.064 0.936 31 H 0.098 0.902 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.086 0.914 37 H 0.082 0.918 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 1.054 -0.476 20.050 20.083 hybrid contribution 0.460 0.063 -0.606 0.763 sum 1.514 -0.413 19.444 19.507 Atomic orbital electron populations 1.22439 0.99333 1.00799 0.99294 1.19075 0.90133 0.94620 0.82803 0.93474 1.21057 1.33226 1.14392 0.88602 0.90257 1.24842 0.95503 0.96741 0.95519 1.69874 1.44983 1.40155 0.98040 0.86857 0.80522 0.83587 0.77401 1.20296 1.18655 1.22185 1.46178 1.65531 1.13821 1.09799 1.20411 0.78820 0.87671 0.84509 1.90652 1.50620 1.16049 1.84920 1.21883 1.00814 0.96119 0.90513 1.60329 1.58587 1.08933 1.02124 1.22225 0.95223 0.95247 0.90177 1.22472 0.99207 0.99865 0.93919 1.22490 1.00342 0.96773 0.96644 1.22284 0.99187 0.97465 0.96851 1.22341 0.98877 0.99502 0.95785 0.94482 0.93540 0.92877 0.92304 0.77274 0.88606 0.92717 0.82955 0.93646 0.90155 0.92143 0.91830 0.91621 0.92001 0.91364 0.91777 0.90885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.67 8.97 37.16 0.33 -3.33 16 2 C 0.24 5.74 2.15 -69.08 -0.15 5.59 16 3 H 0.05 1.26 6.63 -51.93 -0.34 0.92 16 4 C -0.53 -14.57 9.31 -34.44 -0.32 -14.89 16 5 H 0.08 2.26 7.98 -52.49 -0.42 1.84 16 6 C 0.08 2.19 5.45 -17.82 -0.10 2.09 16 7 N -0.89 -26.61 13.96 55.43 0.77 -25.84 16 8 Si 0.89 22.02 24.37 -169.99 -4.14 17.88 16 9 H -0.28 -6.64 6.87 56.52 0.39 -6.25 16 10 H -0.26 -6.49 6.53 56.52 0.37 -6.12 16 11 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 12 N -0.70 -14.04 5.07 -54.93 -0.28 -14.32 16 13 C 0.50 9.49 7.83 -10.98 -0.09 9.41 16 14 O -0.54 -12.42 15.87 5.56 0.09 -12.33 16 15 C 0.04 0.54 5.99 -4.98 -0.03 0.51 16 16 N -0.67 -8.95 5.89 -106.81 -0.63 -9.58 16 17 C 0.08 0.86 3.24 -66.60 -0.22 0.64 16 18 C -0.12 -1.16 6.47 -25.03 -0.16 -1.32 16 19 C -0.12 -1.03 6.91 -24.69 -0.17 -1.20 16 20 C -0.12 -1.01 6.83 -25.07 -0.17 -1.18 16 21 C -0.13 -1.18 6.48 -25.61 -0.17 -1.34 16 22 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 23 H 0.05 1.09 3.27 -51.93 -0.17 0.92 16 24 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 25 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 26 H 0.39 6.85 8.54 -40.82 -0.35 6.50 16 27 H 0.10 1.18 8.12 -51.93 -0.42 0.76 16 28 H 0.05 0.67 8.07 -51.93 -0.42 0.25 16 29 H 0.35 4.89 7.73 -39.30 -0.30 4.59 16 30 H 0.05 0.46 7.82 -51.93 -0.41 0.05 16 31 H 0.08 0.93 8.05 -51.93 -0.42 0.52 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.07 0.72 7.48 -51.93 -0.39 0.33 16 LS Contribution 302.43 15.07 4.56 4.56 Total: -1.00 -31.35 302.43 -7.07 -38.41 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: -6.20 Total: 6.25 kcal Atomic # 6 Polarization: -3.80 SS G_CDS: -1.23 Total: -5.03 kcal Atomic # 7 Polarization: -49.60 SS G_CDS: -0.13 Total: -49.74 kcal Atomic # 8 Polarization: -12.42 SS G_CDS: 0.09 Total: -12.33 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.14 Total: 17.88 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -31.35 -7.07 -38.41 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050392410.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.968 kcal (2) G-P(sol) polarization free energy of solvation -31.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds