Wall clock time and date at job start Mon Mar 30 2020 03:23:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.47057 * 2 1 4 4 C 1.50696 * 109.47712 * 239.99735 * 2 1 3 5 5 H 1.07999 * 120.00319 * 240.00495 * 4 2 1 6 6 C 1.37885 * 119.99717 * 59.99878 * 4 2 1 7 7 N 1.31516 * 119.99913 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 0.02562 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46506 * 109.47074 * 119.99711 * 2 1 3 13 13 C 1.34781 * 120.00067 * 275.00178 * 12 2 1 14 14 O 1.21281 * 119.99724 * 359.97438 * 13 12 2 15 15 C 1.50697 * 119.99965 * 179.97438 * 13 12 2 16 16 N 1.46899 * 109.46928 * 179.97438 * 15 13 12 17 17 C 1.46898 * 110.99684 * 180.02562 * 16 15 13 18 18 C 1.54264 * 110.03486 * 272.91095 * 17 16 15 19 19 C 1.54967 * 104.15922 * 217.13722 * 18 17 16 20 20 C 1.54892 * 102.77799 * 37.88891 * 19 18 17 21 21 C 1.53878 * 110.03286 * 155.69385 * 17 16 15 22 22 H 1.08996 * 109.47024 * 300.00143 * 1 2 3 23 23 H 1.08998 * 109.46637 * 59.99843 * 1 2 3 24 24 H 1.08997 * 109.46749 * 180.02562 * 1 2 3 25 25 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 26 26 H 0.97000 * 119.99972 * 95.00133 * 12 2 1 27 27 H 1.08996 * 109.47441 * 300.00678 * 15 13 12 28 28 H 1.09005 * 109.46714 * 60.00041 * 15 13 12 29 29 H 1.00893 * 110.99843 * 303.95657 * 16 15 13 30 30 H 1.09007 * 110.01769 * 34.30424 * 17 16 15 31 31 H 1.08993 * 110.48541 * 335.78418 * 18 17 16 32 32 H 1.09001 * 110.48735 * 98.43219 * 18 17 16 33 33 H 1.09000 * 110.72150 * 279.56748 * 19 18 17 34 34 H 1.09000 * 110.92059 * 156.29604 * 19 18 17 35 35 H 1.08995 * 110.48378 * 203.40647 * 20 19 18 36 36 H 1.08997 * 110.59655 * 80.81484 * 20 19 18 37 37 H 1.09002 * 110.03344 * 238.57268 * 21 17 16 38 38 H 1.09006 * 110.02875 * 359.97438 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7104 -1.2303 5 1 2.6533 -1.5885 -1.1312 6 6 1.6994 -0.2394 -2.4827 7 7 2.1375 -0.8596 -3.5565 8 14 0.6260 1.2797 -2.6541 9 1 -0.8019 0.8744 -2.6994 10 1 0.8491 2.1773 -1.4922 11 1 0.9774 1.9953 -3.9070 12 7 2.0183 -0.6906 1.1963 13 6 2.1470 -0.0182 2.3572 14 8 1.8590 1.1587 2.4115 15 6 2.6488 -0.7287 3.5879 16 7 2.6989 0.2155 4.7121 17 6 3.1852 -0.4435 5.9316 18 6 2.0073 -1.0929 6.6871 19 6 2.3482 -0.8719 8.1825 20 6 2.9730 0.5454 8.1857 21 6 3.7993 0.5974 6.8841 22 1 -0.3633 0.5138 0.8899 23 1 -0.3632 0.5139 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.9028 -0.5285 -4.4375 26 1 2.2491 -1.6317 1.1527 27 1 1.9760 -1.5505 3.8327 28 1 3.6480 -1.1212 3.3987 29 1 3.2657 1.0186 4.4848 30 1 3.9275 -1.1998 5.6764 31 1 1.0708 -0.5969 6.4321 32 1 1.9500 -2.1577 6.4614 33 1 3.0694 -1.6129 8.5273 34 1 1.4470 -0.8982 8.7951 35 1 3.6196 0.6752 9.0535 36 1 2.1942 1.3078 8.1739 37 1 4.8393 0.3458 7.0918 38 1 3.7368 1.5915 6.4412 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050392410.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:06 Heat of formation + Delta-G solvation = -69.713010 kcal Electronic energy + Delta-G solvation = -17204.320307 eV Core-core repulsion = 14466.076066 eV Total energy + Delta-G solvation = -2738.244241 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.70337 -39.23222 -36.86615 -35.05393 -34.38400 -31.91880 -29.64241 -28.98416 -27.23354 -25.97742 -22.89478 -21.56447 -21.19914 -20.82806 -19.07616 -17.78269 -17.46605 -16.90085 -16.65016 -16.10064 -15.86621 -15.34275 -14.96071 -14.79909 -14.32679 -14.14147 -14.10473 -13.77640 -13.36650 -12.99763 -12.79378 -12.45162 -12.14762 -11.98072 -11.94770 -11.86130 -11.68432 -11.61485 -11.39579 -11.28401 -10.87960 -10.66775 -9.86591 -9.36014 -8.38970 -6.44690 1.27115 1.35190 1.44938 1.79331 2.25746 2.36464 2.97288 3.31184 3.68632 3.79124 3.95574 4.11686 4.36146 4.43046 4.46048 4.51035 4.57565 4.63929 4.64278 4.71953 4.84398 4.88362 4.98934 5.01816 5.11297 5.21045 5.29335 5.32352 5.32925 5.43106 5.54532 5.66244 6.04153 6.17153 6.38217 6.57173 6.91419 7.19271 7.49002 8.76265 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.057772 B = 0.004267 C = 0.004198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 484.548376 B = 6561.149310 C = 6668.022902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.242 3.758 3 H 0.020 0.980 4 C -0.533 4.533 5 H 0.058 0.942 6 C 0.029 3.971 7 N -0.933 5.933 8 Si 0.939 3.061 9 H -0.260 1.260 10 H -0.264 1.264 11 H -0.292 1.292 12 N -0.703 5.703 13 C 0.499 3.501 14 O -0.585 6.585 15 C 0.053 3.947 16 N -0.682 5.682 17 C 0.080 3.920 18 C -0.118 4.118 19 C -0.120 4.120 20 C -0.120 4.120 21 C -0.127 4.127 22 H 0.043 0.957 23 H 0.040 0.960 24 H 0.065 0.935 25 H 0.270 0.730 26 H 0.408 0.592 27 H 0.117 0.883 28 H 0.079 0.921 29 H 0.344 0.656 30 H 0.057 0.943 31 H 0.059 0.941 32 H 0.069 0.931 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.076 0.924 36 H 0.058 0.942 37 H 0.078 0.922 38 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.739 -1.702 21.892 22.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.137 3.863 3 H 0.038 0.962 4 C -0.571 4.571 5 H 0.076 0.924 6 C -0.171 4.171 7 N -0.572 5.572 8 Si 0.767 3.233 9 H -0.185 1.185 10 H -0.189 1.189 11 H -0.219 1.219 12 N -0.353 5.353 13 C 0.287 3.713 14 O -0.466 6.466 15 C -0.079 4.079 16 N -0.315 5.315 17 C -0.029 4.029 18 C -0.156 4.156 19 C -0.158 4.158 20 C -0.158 4.158 21 C -0.165 4.165 22 H 0.062 0.938 23 H 0.058 0.942 24 H 0.084 0.916 25 H 0.080 0.920 26 H 0.243 0.757 27 H 0.135 0.865 28 H 0.096 0.904 29 H 0.164 0.836 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.087 0.913 33 H 0.095 0.905 34 H 0.089 0.911 35 H 0.095 0.905 36 H 0.076 0.924 37 H 0.096 0.904 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.888 -0.962 21.878 21.917 hybrid contribution 0.576 0.169 -1.118 1.269 sum 1.464 -0.793 20.760 20.827 Atomic orbital electron populations 1.22331 0.97952 1.01639 0.99294 1.18731 0.91133 0.93118 0.83339 0.96167 1.21271 1.32350 1.13592 0.89924 0.92407 1.25555 0.96828 0.99318 0.95370 1.69974 1.46686 1.41925 0.98656 0.85997 0.79816 0.80369 0.77135 1.18538 1.18931 1.21882 1.46024 1.65721 1.14429 1.09137 1.21286 0.77521 0.87248 0.85287 1.90632 1.52264 1.18070 1.85614 1.21817 1.02166 0.95841 0.88089 1.60365 1.59262 1.09082 1.02804 1.22343 0.95748 0.95694 0.89154 1.22471 0.97966 1.00047 0.95103 1.22484 1.00935 0.96856 0.95489 1.22294 0.99090 0.97401 0.97000 1.22355 0.99763 0.98577 0.95797 0.93772 0.94174 0.91601 0.92028 0.75717 0.86511 0.90359 0.83627 0.92535 0.92194 0.91256 0.90508 0.91074 0.90489 0.92354 0.90379 0.91965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.82 8.97 71.98 0.65 -6.18 16 2 C 0.24 11.60 2.15 44.24 0.10 11.69 16 3 H 0.02 1.09 6.63 -2.38 -0.02 1.08 16 4 C -0.53 -29.17 9.31 25.60 0.24 -28.93 16 5 H 0.06 3.34 7.98 -2.91 -0.02 3.32 16 6 C 0.03 1.65 5.45 84.66 0.46 2.11 16 7 N -0.93 -56.05 13.96 21.45 0.30 -55.75 16 8 Si 0.94 45.17 24.37 68.60 1.67 46.84 16 9 H -0.26 -11.74 6.87 99.48 0.68 -11.05 16 10 H -0.26 -12.75 6.53 99.48 0.65 -12.10 16 11 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 12 N -0.70 -27.35 5.07 -446.08 -2.26 -29.61 16 13 C 0.50 18.36 7.83 87.66 0.69 19.05 16 14 O -0.59 -26.56 15.87 -3.03 -0.05 -26.61 16 15 C 0.05 1.35 5.99 85.56 0.51 1.86 16 16 N -0.68 -17.31 5.89 -491.83 -2.89 -20.20 16 17 C 0.08 1.51 3.24 45.64 0.15 1.66 16 18 C -0.12 -2.10 6.47 31.70 0.20 -1.89 16 19 C -0.12 -1.68 6.91 31.91 0.22 -1.46 16 20 C -0.12 -1.78 6.83 31.67 0.22 -1.56 16 21 C -0.13 -2.11 6.48 31.32 0.20 -1.91 16 22 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 23 H 0.04 1.81 3.27 -2.39 -0.01 1.81 16 24 H 0.06 2.71 8.14 -2.39 -0.02 2.69 16 25 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 26 H 0.41 13.62 8.54 -92.71 -0.79 12.83 16 27 H 0.12 2.52 8.12 -2.39 -0.02 2.50 16 28 H 0.08 1.67 8.07 -2.38 -0.02 1.65 16 29 H 0.34 9.35 7.73 -89.70 -0.69 8.66 16 30 H 0.06 0.97 7.82 -2.38 -0.02 0.95 16 31 H 0.06 1.32 8.05 -2.39 -0.02 1.30 16 32 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.06 1.17 7.48 -2.38 -0.02 1.16 16 Total: -1.00 -67.01 302.43 -0.11 -67.12 By element: Atomic # 1 Polarization: 24.29 SS G_CDS: -0.51 Total: 23.78 kcal Atomic # 6 Polarization: -9.20 SS G_CDS: 3.63 Total: -5.57 kcal Atomic # 7 Polarization: -100.71 SS G_CDS: -4.86 Total: -105.57 kcal Atomic # 8 Polarization: -26.56 SS G_CDS: -0.05 Total: -26.61 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 1.67 Total: 46.84 kcal Total: -67.01 -0.11 -67.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050392410.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.594 kcal (2) G-P(sol) polarization free energy of solvation -67.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds