Wall clock time and date at job start Mon Mar 30 2020 03:19:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46497 * 109.47145 * 240.00568 * 2 1 3 13 13 C 1.34777 * 120.00015 * 84.99707 * 12 2 1 14 14 O 1.21279 * 120.00228 * 359.97438 * 13 12 2 15 15 C 1.50709 * 119.99692 * 180.02562 * 13 12 2 16 16 C 1.53001 * 109.46811 * 180.02562 * 15 13 12 17 17 C 1.53122 * 109.51965 * 294.68200 * 16 15 13 18 18 C 1.53042 * 109.27800 * 182.44156 * 17 16 15 19 19 N 1.46851 * 109.52202 * 59.17453 * 18 17 16 20 20 C 1.46842 * 111.20106 * 298.26086 * 19 18 17 21 21 C 1.53045 * 109.52350 * 61.74262 * 20 19 18 22 22 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 24 24 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 25 25 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 26 26 H 0.97005 * 119.99880 * 265.00058 * 12 2 1 27 27 H 1.09003 * 109.46726 * 300.00059 * 15 13 12 28 28 H 1.08992 * 109.47335 * 60.00408 * 15 13 12 29 29 H 1.08996 * 109.52607 * 54.86876 * 16 15 13 30 30 H 1.09001 * 109.50501 * 302.37924 * 17 16 15 31 31 H 1.08992 * 109.50455 * 62.50380 * 17 16 15 32 32 H 1.09002 * 109.46278 * 299.16673 * 18 17 16 33 33 H 1.08992 * 109.46639 * 179.19124 * 18 17 16 34 34 H 1.00902 * 110.99595 * 62.35545 * 19 18 17 35 35 H 1.08993 * 109.46343 * 301.72630 * 20 19 18 36 36 H 1.09001 * 109.46176 * 181.75382 * 20 19 18 37 37 H 1.09002 * 109.49999 * 180.88097 * 21 20 19 38 38 H 1.09001 * 109.50326 * 60.76299 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.3427 -2.1620 4.4117 10 1 3.6293 -1.7586 3.7120 11 1 2.4865 -0.1417 5.1122 12 7 2.0183 -0.6905 -1.1962 13 6 2.1470 -0.0180 -2.3571 14 8 1.8581 1.1586 -2.4117 15 6 2.6488 -0.7286 -3.5878 16 6 2.7010 0.2548 -4.7588 17 6 1.2809 0.7062 -5.1114 18 6 1.3339 1.6417 -6.3215 19 7 1.9401 0.9385 -7.4592 20 6 3.3207 0.5370 -7.1609 21 6 3.3270 -0.4316 -5.9759 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5139 -0.8900 25 1 0.7089 1.1611 3.4845 26 1 2.2490 -1.6317 -1.1527 27 1 3.6480 -1.1211 -3.3986 28 1 1.9760 -1.5503 -3.8327 29 1 3.3009 1.1212 -4.4805 30 1 0.6712 -0.1649 -5.3514 31 1 0.8454 1.2335 -4.2627 32 1 1.9324 2.5191 -6.0763 33 1 0.3231 1.9536 -6.5841 34 1 1.3827 0.1425 -7.7308 35 1 3.9098 1.4195 -6.9117 36 1 3.7528 0.0464 -8.0331 37 1 4.3532 -0.7172 -5.7448 38 1 2.7495 -1.3206 -6.2295 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050392430.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:34 Heat of formation + Delta-G solvation = -63.021681 kcal Electronic energy + Delta-G solvation = -17569.883977 eV Core-core repulsion = 14831.929893 eV Total energy + Delta-G solvation = -2737.954083 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.57566 -38.09954 -34.84771 -33.11163 -32.35103 -30.78208 -29.31497 -27.15693 -25.25625 -22.99280 -22.70869 -20.97518 -20.00742 -19.33008 -17.06090 -16.14150 -15.54758 -15.31782 -14.76153 -14.65808 -14.27413 -14.26505 -13.75908 -13.21894 -12.63870 -12.41176 -12.26586 -12.08463 -11.70905 -11.44240 -11.24609 -11.15749 -11.04222 -10.92592 -10.70005 -10.46772 -10.32525 -10.26166 -10.21666 -9.05123 -8.96007 -8.56405 -8.34783 -7.88020 -6.13025 -4.22349 3.23202 3.30080 3.32255 3.43957 4.09473 4.27877 4.37776 4.75351 4.91703 4.94594 5.14756 5.19213 5.37555 5.40468 5.49780 5.60480 5.67245 5.73341 5.80801 5.91721 6.02909 6.06991 6.16353 6.46194 6.49225 6.82083 6.95911 7.00247 7.15256 7.30965 7.48147 7.57066 7.69545 7.91725 8.15007 8.69149 8.78577 9.16622 9.45671 10.92937 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.057278 B = 0.004594 C = 0.004389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 488.725929 B = 6093.631859 C = 6378.700996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.263 3.737 3 H 0.048 0.952 4 C -0.534 4.534 5 H 0.060 0.940 6 C 0.066 3.934 7 N -0.884 5.884 8 Si 0.901 3.099 9 H -0.279 1.279 10 H -0.274 1.274 11 H -0.285 1.285 12 N -0.712 5.712 13 C 0.500 3.500 14 O -0.554 6.554 15 C -0.139 4.139 16 C -0.068 4.068 17 C -0.156 4.156 18 C 0.057 3.943 19 N -0.689 5.689 20 C 0.057 3.943 21 C -0.154 4.154 22 H 0.025 0.975 23 H 0.089 0.911 24 H 0.014 0.986 25 H 0.264 0.736 26 H 0.387 0.613 27 H 0.085 0.915 28 H 0.083 0.917 29 H 0.078 0.922 30 H 0.052 0.948 31 H 0.093 0.907 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.337 0.663 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.066 0.934 38 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.792 -4.167 -15.212 16.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.162 3.838 3 H 0.065 0.935 4 C -0.572 4.572 5 H 0.078 0.922 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.729 3.271 9 H -0.205 1.205 10 H -0.199 1.199 11 H -0.210 1.210 12 N -0.359 5.359 13 C 0.285 3.715 14 O -0.433 6.433 15 C -0.179 4.179 16 C -0.087 4.087 17 C -0.195 4.195 18 C -0.072 4.072 19 N -0.317 5.317 20 C -0.072 4.072 21 C -0.193 4.193 22 H 0.044 0.956 23 H 0.108 0.892 24 H 0.033 0.967 25 H 0.074 0.926 26 H 0.219 0.781 27 H 0.103 0.897 28 H 0.101 0.899 29 H 0.096 0.904 30 H 0.070 0.930 31 H 0.111 0.889 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.154 0.846 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.085 0.915 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.680 -2.592 -15.403 15.848 hybrid contribution 0.256 -1.831 1.679 2.497 sum 2.936 -4.424 -13.724 14.715 Atomic orbital electron populations 1.22066 0.98559 0.98987 1.00823 1.18717 0.90961 0.93975 0.80179 0.93457 1.21231 1.32426 1.13179 0.90414 0.92152 1.24897 0.94833 0.94937 0.99065 1.69907 1.35926 1.22418 1.23855 0.86451 0.79157 0.79282 0.82222 1.20547 1.19871 1.21043 1.46563 1.65143 1.13489 1.10734 1.20470 0.78625 0.87616 0.84811 1.90606 1.51440 1.16213 1.85078 1.21763 1.02505 0.99389 0.94238 1.20868 0.97237 0.97900 0.92676 1.22399 0.96581 0.99984 1.00575 1.22016 0.99634 0.96964 0.88579 1.60705 1.03377 1.30535 1.37117 1.21996 0.90755 0.98151 0.96332 1.22350 1.01294 0.99057 0.96589 0.95594 0.89219 0.96726 0.92585 0.78055 0.89658 0.89878 0.90367 0.92952 0.88854 0.90896 0.91004 0.84631 0.90969 0.91058 0.91528 0.92135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.66 9.26 37.16 0.34 -3.31 16 2 C 0.26 6.76 2.56 -69.09 -0.18 6.58 16 3 H 0.05 1.40 7.58 -51.93 -0.39 1.01 16 4 C -0.53 -14.25 8.73 -34.44 -0.30 -14.55 16 5 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 6 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 7 N -0.88 -25.04 11.32 55.43 0.63 -24.41 16 8 Si 0.90 20.68 29.54 -169.99 -5.02 15.66 16 9 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 10 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 11 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 12 N -0.71 -14.81 5.07 -54.93 -0.28 -15.09 16 13 C 0.50 9.74 7.53 -10.98 -0.08 9.66 16 14 O -0.55 -12.81 13.65 5.56 0.08 -12.74 16 15 C -0.14 -1.93 5.18 -27.88 -0.14 -2.08 16 16 C -0.07 -0.89 1.90 -90.50 -0.17 -1.06 16 17 C -0.16 -2.12 5.08 -26.65 -0.14 -2.25 16 18 C 0.06 0.69 6.55 -3.83 -0.03 0.66 16 19 N -0.69 -7.33 6.87 -113.81 -0.78 -8.11 16 20 C 0.06 0.57 6.55 -3.83 -0.03 0.54 16 21 C -0.15 -1.56 5.36 -26.65 -0.14 -1.70 16 22 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 23 H 0.09 2.45 6.07 -51.93 -0.32 2.13 16 24 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 26 H 0.39 6.98 8.54 -40.82 -0.35 6.63 16 27 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 28 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.08 1.19 7.95 -51.93 -0.41 0.77 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.09 1.59 6.04 -51.93 -0.31 1.27 16 32 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.34 3.16 8.86 -39.29 -0.35 2.81 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 LS Contribution 302.42 15.07 4.56 4.56 Total: -1.00 -29.86 302.42 -8.10 -37.96 By element: Atomic # 1 Polarization: 14.32 SS G_CDS: -6.32 Total: 7.99 kcal Atomic # 6 Polarization: -4.87 SS G_CDS: -0.96 Total: -5.83 kcal Atomic # 7 Polarization: -47.18 SS G_CDS: -0.43 Total: -47.61 kcal Atomic # 8 Polarization: -12.81 SS G_CDS: 0.08 Total: -12.74 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -29.86 -8.10 -37.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050392430.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.063 kcal (2) G-P(sol) polarization free energy of solvation -29.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds