Wall clock time and date at job start Mon Mar 30 2020 03:19:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46497 * 109.47145 * 240.00568 * 2 1 3 13 13 C 1.34777 * 120.00015 * 84.99707 * 12 2 1 14 14 O 1.21279 * 120.00228 * 359.97438 * 13 12 2 15 15 C 1.50709 * 119.99692 * 180.02562 * 13 12 2 16 16 C 1.53001 * 109.46811 * 180.02562 * 15 13 12 17 17 C 1.53122 * 109.51965 * 294.68200 * 16 15 13 18 18 C 1.53042 * 109.27800 * 182.44156 * 17 16 15 19 19 N 1.46851 * 109.52202 * 59.17453 * 18 17 16 20 20 C 1.46842 * 111.20106 * 298.26086 * 19 18 17 21 21 C 1.53045 * 109.52350 * 61.74262 * 20 19 18 22 22 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 24 24 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 25 25 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 26 26 H 0.97005 * 119.99880 * 265.00058 * 12 2 1 27 27 H 1.09003 * 109.46726 * 300.00059 * 15 13 12 28 28 H 1.08992 * 109.47335 * 60.00408 * 15 13 12 29 29 H 1.08996 * 109.52607 * 54.86876 * 16 15 13 30 30 H 1.09001 * 109.50501 * 302.37924 * 17 16 15 31 31 H 1.08992 * 109.50455 * 62.50380 * 17 16 15 32 32 H 1.09002 * 109.46278 * 299.16673 * 18 17 16 33 33 H 1.08992 * 109.46639 * 179.19124 * 18 17 16 34 34 H 1.00902 * 110.99595 * 62.35545 * 19 18 17 35 35 H 1.08993 * 109.46343 * 301.72630 * 20 19 18 36 36 H 1.09001 * 109.46176 * 181.75382 * 20 19 18 37 37 H 1.09002 * 109.49999 * 180.88097 * 21 20 19 38 38 H 1.09001 * 109.50326 * 60.76299 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.3427 -2.1620 4.4117 10 1 3.6293 -1.7586 3.7120 11 1 2.4865 -0.1417 5.1122 12 7 2.0183 -0.6905 -1.1962 13 6 2.1470 -0.0180 -2.3571 14 8 1.8581 1.1586 -2.4117 15 6 2.6488 -0.7286 -3.5878 16 6 2.7010 0.2548 -4.7588 17 6 1.2809 0.7062 -5.1114 18 6 1.3339 1.6417 -6.3215 19 7 1.9401 0.9385 -7.4592 20 6 3.3207 0.5370 -7.1609 21 6 3.3270 -0.4316 -5.9759 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5139 -0.8900 25 1 0.7089 1.1611 3.4845 26 1 2.2490 -1.6317 -1.1527 27 1 3.6480 -1.1211 -3.3986 28 1 1.9760 -1.5503 -3.8327 29 1 3.3009 1.1212 -4.4805 30 1 0.6712 -0.1649 -5.3514 31 1 0.8454 1.2335 -4.2627 32 1 1.9324 2.5191 -6.0763 33 1 0.3231 1.9536 -6.5841 34 1 1.3827 0.1425 -7.7308 35 1 3.9098 1.4195 -6.9117 36 1 3.7528 0.0464 -8.0331 37 1 4.3532 -0.7172 -5.7448 38 1 2.7495 -1.3206 -6.2295 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050392430.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:34 Heat of formation + Delta-G solvation = -84.761211 kcal Electronic energy + Delta-G solvation = -17570.826673 eV Core-core repulsion = 14831.929893 eV Total energy + Delta-G solvation = -2738.896780 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.93887 -39.33866 -36.72240 -34.36099 -34.15865 -31.68969 -31.12429 -28.43572 -27.35056 -24.11132 -23.74814 -22.58235 -21.17901 -20.93116 -18.84444 -17.49698 -17.17615 -16.86354 -16.23509 -15.87617 -15.53357 -15.23791 -15.16375 -14.69266 -14.31087 -13.94926 -13.57935 -13.38416 -13.09740 -12.92652 -12.83143 -12.74775 -12.41983 -12.30064 -12.19096 -12.11592 -12.07759 -11.47679 -11.26676 -11.11709 -10.66983 -10.48046 -9.71394 -9.25676 -8.19107 -6.37022 1.43533 1.44418 1.55071 1.88656 2.35350 2.68524 3.11177 3.43487 3.75183 3.85056 3.92679 4.23228 4.31120 4.42958 4.47154 4.55787 4.65719 4.72453 4.76152 4.89500 4.97722 5.01571 5.03879 5.08291 5.13317 5.19371 5.33965 5.43938 5.48090 5.61889 5.69160 5.91059 6.09063 6.11092 6.55467 6.71782 7.01306 7.31659 7.61888 8.87205 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.057278 B = 0.004594 C = 0.004389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 488.725929 B = 6093.631859 C = 6378.700996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.269 3.731 3 H -0.005 1.005 4 C -0.548 4.548 5 H 0.073 0.927 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.974 3.026 9 H -0.270 1.270 10 H -0.263 1.263 11 H -0.287 1.287 12 N -0.710 5.710 13 C 0.492 3.508 14 O -0.596 6.596 15 C -0.125 4.125 16 C -0.068 4.068 17 C -0.152 4.152 18 C 0.064 3.936 19 N -0.689 5.689 20 C 0.056 3.944 21 C -0.142 4.142 22 H 0.039 0.961 23 H 0.064 0.936 24 H 0.010 0.990 25 H 0.265 0.735 26 H 0.404 0.596 27 H 0.111 0.889 28 H 0.111 0.889 29 H 0.050 0.950 30 H 0.065 0.935 31 H 0.051 0.949 32 H 0.056 0.944 33 H 0.077 0.923 34 H 0.348 0.652 35 H 0.060 0.940 36 H 0.095 0.905 37 H 0.081 0.919 38 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.815 -6.774 -16.364 18.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.166 3.834 3 H 0.013 0.987 4 C -0.586 4.586 5 H 0.091 0.909 6 C -0.187 4.187 7 N -0.557 5.557 8 Si 0.798 3.202 9 H -0.196 1.196 10 H -0.188 1.188 11 H -0.212 1.212 12 N -0.359 5.359 13 C 0.280 3.720 14 O -0.478 6.478 15 C -0.164 4.164 16 C -0.087 4.087 17 C -0.192 4.192 18 C -0.066 4.066 19 N -0.318 5.318 20 C -0.073 4.073 21 C -0.181 4.181 22 H 0.058 0.942 23 H 0.083 0.917 24 H 0.029 0.971 25 H 0.074 0.926 26 H 0.239 0.761 27 H 0.129 0.871 28 H 0.129 0.871 29 H 0.068 0.932 30 H 0.084 0.916 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.096 0.904 34 H 0.166 0.834 35 H 0.079 0.921 36 H 0.113 0.887 37 H 0.099 0.901 38 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 3.717 -5.240 -16.591 17.791 hybrid contribution -0.074 -0.955 1.992 2.210 sum 3.643 -6.195 -14.599 16.272 Atomic orbital electron populations 1.21876 0.98448 0.99303 0.99397 1.18297 0.91021 0.91818 0.82295 0.98728 1.21566 1.32600 1.13539 0.90890 0.90884 1.25834 0.94871 0.95560 1.02424 1.70062 1.37077 1.23960 1.24598 0.85322 0.78998 0.78019 0.77855 1.19579 1.18762 1.21236 1.46344 1.65443 1.14208 1.09922 1.21532 0.77367 0.87287 0.85806 1.90602 1.52921 1.18486 1.85800 1.21777 1.04129 0.99479 0.91062 1.20869 0.96709 0.97172 0.93970 1.22317 0.96939 1.00324 0.99581 1.21887 0.99844 0.96303 0.88571 1.60681 1.03932 1.31206 1.35998 1.22063 0.90135 0.97933 0.97212 1.22271 1.02027 0.99136 0.94687 0.94171 0.91682 0.97058 0.92565 0.76103 0.87053 0.87093 0.93163 0.91617 0.93051 0.92516 0.90449 0.83413 0.92092 0.88718 0.90081 0.90422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.77 9.26 71.98 0.67 -6.10 16 2 C 0.27 14.17 2.56 44.24 0.11 14.28 16 3 H -0.01 -0.32 7.58 -2.39 -0.02 -0.34 16 4 C -0.55 -29.24 8.73 25.60 0.22 -29.01 16 5 H 0.07 3.62 7.74 -2.91 -0.02 3.60 16 6 C 0.01 0.70 5.30 84.66 0.45 1.15 16 7 N -0.92 -53.28 11.32 21.45 0.24 -53.04 16 8 Si 0.97 42.08 29.54 68.60 2.03 44.11 16 9 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 10 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 11 H -0.29 -12.38 7.11 99.48 0.71 -11.68 16 12 N -0.71 -29.39 5.07 -446.10 -2.26 -31.65 16 13 C 0.49 19.22 7.53 87.66 0.66 19.88 16 14 O -0.60 -28.82 13.65 -3.02 -0.04 -28.87 16 15 C -0.12 -3.19 5.18 29.85 0.15 -3.04 16 16 C -0.07 -1.70 1.90 -10.71 -0.02 -1.72 16 17 C -0.15 -4.07 5.08 30.65 0.16 -3.91 16 18 C 0.06 1.50 6.55 86.33 0.57 2.06 16 19 N -0.69 -13.21 6.87 -514.00 -3.53 -16.74 16 20 C 0.06 0.96 6.55 86.33 0.57 1.52 16 21 C -0.14 -2.40 5.36 30.65 0.16 -2.24 16 22 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 23 H 0.06 3.67 6.07 -2.39 -0.01 3.66 16 24 H 0.01 0.53 8.14 -2.38 -0.02 0.51 16 25 H 0.27 14.53 8.31 -92.71 -0.77 13.76 16 26 H 0.40 13.90 8.54 -92.70 -0.79 13.10 16 27 H 0.11 2.34 8.14 -2.39 -0.02 2.32 16 28 H 0.11 2.30 8.14 -2.39 -0.02 2.28 16 29 H 0.05 1.54 7.95 -2.39 -0.02 1.52 16 30 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.05 1.82 6.04 -2.39 -0.01 1.81 16 32 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.35 5.50 8.86 -89.69 -0.79 4.70 16 35 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 Total: -1.00 -67.15 302.42 -0.40 -67.56 By element: Atomic # 1 Polarization: 26.29 SS G_CDS: -0.54 Total: 25.75 kcal Atomic # 6 Polarization: -10.82 SS G_CDS: 3.70 Total: -7.12 kcal Atomic # 7 Polarization: -95.88 SS G_CDS: -5.55 Total: -101.43 kcal Atomic # 8 Polarization: -28.82 SS G_CDS: -0.04 Total: -28.87 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.03 Total: 44.11 kcal Total: -67.15 -0.40 -67.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050392430.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.205 kcal (2) G-P(sol) polarization free energy of solvation -67.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds