Wall clock time and date at job start Mon Mar 30 2020 03:20:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46641 * 2 1 4 4 C 1.50697 * 109.46811 * 119.99346 * 2 1 3 5 5 H 1.08011 * 119.99571 * 120.00749 * 4 2 1 6 6 C 1.37871 * 120.00501 * 299.99850 * 4 2 1 7 7 N 1.31515 * 119.99867 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00050 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47175 * 60.00893 * 8 6 4 10 10 H 1.48504 * 109.47307 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47672 * 300.00505 * 8 6 4 12 12 N 1.46499 * 109.47070 * 239.99909 * 2 1 3 13 13 C 1.34777 * 120.00199 * 85.00207 * 12 2 1 14 14 O 1.21283 * 119.99750 * 359.97438 * 13 12 2 15 15 C 1.50702 * 119.99928 * 180.27479 * 13 12 2 16 16 C 1.52996 * 109.47159 * 179.72352 * 15 13 12 17 17 H 1.09005 * 109.50177 * 304.92127 * 16 15 13 18 18 C 1.53111 * 109.50609 * 184.80243 * 16 15 13 19 19 C 1.53114 * 109.16458 * 182.40189 * 18 16 15 20 20 C 1.53037 * 109.27682 * 57.65449 * 19 18 16 21 21 N 1.46854 * 109.52267 * 300.81908 * 20 19 18 22 22 C 1.46841 * 111.19358 * 61.74322 * 21 20 19 23 23 H 1.08998 * 109.46925 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47598 * 300.00373 * 1 2 3 25 25 H 1.09005 * 109.47473 * 60.00264 * 1 2 3 26 26 H 0.96999 * 119.99893 * 179.97438 * 7 6 4 27 27 H 0.97000 * 119.99484 * 264.99304 * 12 2 1 28 28 H 1.09004 * 109.46965 * 299.72211 * 15 13 12 29 29 H 1.08994 * 109.46990 * 59.72065 * 15 13 12 30 30 H 1.09000 * 109.52358 * 302.30924 * 18 16 15 31 31 H 1.09002 * 109.52145 * 62.49728 * 18 16 15 32 32 H 1.09003 * 109.50620 * 297.71349 * 19 18 16 33 33 H 1.09004 * 109.53783 * 177.61121 * 19 18 16 34 34 H 1.09004 * 109.46446 * 180.80636 * 20 19 18 35 35 H 1.09003 * 109.46610 * 60.83919 * 20 19 18 36 36 H 1.00894 * 110.99978 * 297.64282 * 21 20 19 37 37 H 1.09002 * 109.46492 * 178.24001 * 22 21 20 38 38 H 1.09006 * 109.46462 * 58.27808 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0322 -0.7103 1.2305 5 1 2.6533 -1.5884 1.1315 6 6 1.6992 -0.2392 2.4827 7 7 0.9428 0.8299 2.6033 8 14 2.3213 -1.1201 4.0080 9 1 3.8062 -1.1206 4.0083 10 1 1.8259 -0.4203 5.2205 11 1 1.8258 -2.5200 4.0079 12 7 2.0183 -0.6906 -1.1961 13 6 2.1471 -0.0183 -2.3571 14 8 1.8582 1.1583 -2.4117 15 6 2.6435 -0.7303 -3.5891 16 6 2.6898 0.2514 -4.7617 17 1 1.7093 0.7095 -4.8916 18 6 3.0787 -0.4967 -6.0397 19 6 3.1813 0.5023 -7.1955 20 6 4.2054 1.5826 -6.8402 21 7 3.7878 2.2696 -5.6113 22 6 3.7281 1.3390 -4.4770 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 0.7081 1.1611 3.4843 27 1 2.2491 -1.6318 -1.1525 28 1 3.6436 -1.1225 -3.4039 29 1 1.9697 -1.5525 -3.8299 30 1 4.0414 -0.9874 -5.8959 31 1 2.3190 -1.2436 -6.2701 32 1 2.2086 0.9645 -7.3644 33 1 3.4992 -0.0173 -8.0994 34 1 4.2704 2.3036 -7.6551 35 1 5.1808 1.1214 -6.6850 36 1 2.9038 2.7381 -5.7416 37 1 3.4464 1.8829 -3.5753 38 1 4.7057 0.8789 -4.3327 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054309052.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:48 Heat of formation + Delta-G solvation = -62.704633 kcal Electronic energy + Delta-G solvation = -17571.385408 eV Core-core repulsion = 14833.445073 eV Total energy + Delta-G solvation = -2737.940335 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.58128 -38.07052 -34.81734 -32.93215 -32.31564 -31.33999 -29.16998 -26.74626 -25.23624 -23.52900 -22.40543 -20.86774 -20.04547 -19.31221 -17.02148 -15.95652 -15.66577 -15.30786 -15.21342 -14.69015 -14.31904 -13.97976 -13.53939 -13.30584 -12.49679 -12.40228 -12.26337 -12.00137 -11.73449 -11.57637 -11.27911 -11.05583 -11.01422 -10.89758 -10.74075 -10.59666 -10.42238 -10.26517 -10.22536 -9.04458 -8.88526 -8.53618 -8.25387 -7.86948 -6.11311 -4.20763 3.25876 3.31214 3.32256 3.44137 4.09281 4.35922 4.42714 4.72069 4.84513 4.95964 5.05589 5.20770 5.27977 5.41293 5.51239 5.58434 5.66713 5.74046 5.83532 5.85729 5.91986 6.04351 6.10305 6.37954 6.52219 6.83477 6.97589 7.12558 7.16568 7.46348 7.49364 7.58056 7.70823 7.92995 8.16467 8.70003 8.79657 9.17118 9.47131 10.94598 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.050674 B = 0.004589 C = 0.004566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 552.413575 B = 6100.221488 C = 6130.366749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.264 3.736 3 H 0.048 0.952 4 C -0.534 4.534 5 H 0.060 0.940 6 C 0.066 3.934 7 N -0.884 5.884 8 Si 0.901 3.099 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.711 5.711 13 C 0.499 3.501 14 O -0.554 6.554 15 C -0.136 4.136 16 C -0.105 4.105 17 H 0.076 0.924 18 C -0.116 4.116 19 C -0.157 4.157 20 C 0.055 3.945 21 N -0.686 5.686 22 C 0.056 3.944 23 H 0.025 0.975 24 H 0.089 0.911 25 H 0.014 0.986 26 H 0.265 0.735 27 H 0.388 0.612 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.341 0.659 37 H 0.101 0.899 38 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.004 -3.705 -15.545 16.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.162 3.838 3 H 0.066 0.934 4 C -0.573 4.573 5 H 0.078 0.922 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.729 3.271 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.358 5.358 13 C 0.284 3.716 14 O -0.434 6.434 15 C -0.177 4.177 16 C -0.125 4.125 17 H 0.094 0.906 18 C -0.153 4.153 19 C -0.196 4.196 20 C -0.075 4.075 21 N -0.313 5.313 22 C -0.073 4.073 23 H 0.044 0.956 24 H 0.108 0.892 25 H 0.033 0.967 26 H 0.075 0.925 27 H 0.220 0.780 28 H 0.104 0.896 29 H 0.103 0.897 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.158 0.842 37 H 0.119 0.881 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 4.354 -2.486 -15.243 16.046 hybrid contribution -0.487 -1.646 0.671 1.843 sum 3.867 -4.132 -14.572 15.633 Atomic orbital electron populations 1.22070 0.98586 0.98986 1.00831 1.18716 0.90940 0.93997 0.80147 0.93394 1.21191 1.32476 1.13209 0.90417 0.92196 1.24887 0.94812 0.94949 0.99043 1.69894 1.35801 1.22451 1.23964 0.86512 0.79174 0.79570 0.81852 1.20171 1.21117 1.20198 1.46554 1.65055 1.13501 1.10725 1.20469 0.78608 0.87631 0.84850 1.90611 1.51350 1.16161 1.85235 1.21693 1.02715 0.99257 0.94029 1.21588 1.01185 0.96661 0.93115 0.90559 1.21641 1.01524 0.97686 0.94493 1.22259 1.00491 0.98485 0.98384 1.22037 0.97979 0.95001 0.92525 1.60673 1.36326 1.29908 1.04399 1.22287 0.97351 0.92775 0.94912 0.95597 0.89207 0.96730 0.92532 0.78028 0.89553 0.89705 0.91922 0.92110 0.92080 0.91783 0.91192 0.91214 0.84164 0.88101 0.91841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.67 9.26 37.16 0.34 -3.32 16 2 C 0.26 6.74 2.56 -69.08 -0.18 6.56 16 3 H 0.05 1.42 7.58 -51.93 -0.39 1.02 16 4 C -0.53 -14.22 8.73 -34.44 -0.30 -14.52 16 5 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 6 C 0.07 1.79 5.30 -17.82 -0.09 1.70 16 7 N -0.88 -25.03 11.32 55.43 0.63 -24.40 16 8 Si 0.90 20.68 29.54 -169.99 -5.02 15.66 16 9 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 10 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 12 N -0.71 -14.67 5.07 -54.93 -0.28 -14.95 16 13 C 0.50 9.63 7.52 -10.98 -0.08 9.55 16 14 O -0.55 -12.69 13.63 5.55 0.08 -12.61 16 15 C -0.14 -1.87 5.18 -27.88 -0.14 -2.01 16 16 C -0.10 -1.38 1.98 -90.55 -0.18 -1.56 16 17 H 0.08 1.13 7.96 -51.93 -0.41 0.72 16 18 C -0.12 -1.20 5.29 -26.62 -0.14 -1.34 16 19 C -0.16 -1.49 6.08 -26.65 -0.16 -1.65 16 20 C 0.05 0.56 6.55 -3.83 -0.03 0.53 16 21 N -0.69 -8.78 6.87 -113.81 -0.78 -9.56 16 22 C 0.06 0.80 5.57 -3.84 -0.02 0.78 16 23 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.09 2.45 6.07 -51.93 -0.32 2.13 16 25 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 27 H 0.39 6.92 8.54 -40.82 -0.35 6.57 16 28 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.34 4.23 8.86 -39.30 -0.35 3.88 16 37 H 0.10 1.80 5.97 -51.93 -0.31 1.49 16 38 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 302.35 15.07 4.56 4.56 Total: -1.00 -29.68 302.35 -8.12 -37.80 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: -6.32 Total: 8.78 kcal Atomic # 6 Polarization: -4.30 SS G_CDS: -0.98 Total: -5.28 kcal Atomic # 7 Polarization: -48.48 SS G_CDS: -0.43 Total: -48.91 kcal Atomic # 8 Polarization: -12.69 SS G_CDS: 0.08 Total: -12.61 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -29.68 -8.12 -37.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054309052.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.900 kcal (2) G-P(sol) polarization free energy of solvation -29.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds