Wall clock time and date at job start Mon Mar 30 2020 03:20:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46641 * 2 1 4 4 C 1.50697 * 109.46811 * 119.99346 * 2 1 3 5 5 H 1.08011 * 119.99571 * 120.00749 * 4 2 1 6 6 C 1.37871 * 120.00501 * 299.99850 * 4 2 1 7 7 N 1.31515 * 119.99867 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00050 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47175 * 60.00893 * 8 6 4 10 10 H 1.48504 * 109.47307 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47672 * 300.00505 * 8 6 4 12 12 N 1.46499 * 109.47070 * 239.99909 * 2 1 3 13 13 C 1.34777 * 120.00199 * 85.00207 * 12 2 1 14 14 O 1.21283 * 119.99750 * 359.97438 * 13 12 2 15 15 C 1.50702 * 119.99928 * 180.27479 * 13 12 2 16 16 C 1.52996 * 109.47159 * 179.72352 * 15 13 12 17 17 H 1.09005 * 109.50177 * 304.92127 * 16 15 13 18 18 C 1.53111 * 109.50609 * 184.80243 * 16 15 13 19 19 C 1.53114 * 109.16458 * 182.40189 * 18 16 15 20 20 C 1.53037 * 109.27682 * 57.65449 * 19 18 16 21 21 N 1.46854 * 109.52267 * 300.81908 * 20 19 18 22 22 C 1.46841 * 111.19358 * 61.74322 * 21 20 19 23 23 H 1.08998 * 109.46925 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47598 * 300.00373 * 1 2 3 25 25 H 1.09005 * 109.47473 * 60.00264 * 1 2 3 26 26 H 0.96999 * 119.99893 * 179.97438 * 7 6 4 27 27 H 0.97000 * 119.99484 * 264.99304 * 12 2 1 28 28 H 1.09004 * 109.46965 * 299.72211 * 15 13 12 29 29 H 1.08994 * 109.46990 * 59.72065 * 15 13 12 30 30 H 1.09000 * 109.52358 * 302.30924 * 18 16 15 31 31 H 1.09002 * 109.52145 * 62.49728 * 18 16 15 32 32 H 1.09003 * 109.50620 * 297.71349 * 19 18 16 33 33 H 1.09004 * 109.53783 * 177.61121 * 19 18 16 34 34 H 1.09004 * 109.46446 * 180.80636 * 20 19 18 35 35 H 1.09003 * 109.46610 * 60.83919 * 20 19 18 36 36 H 1.00894 * 110.99978 * 297.64282 * 21 20 19 37 37 H 1.09002 * 109.46492 * 178.24001 * 22 21 20 38 38 H 1.09006 * 109.46462 * 58.27808 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0322 -0.7103 1.2305 5 1 2.6533 -1.5884 1.1315 6 6 1.6992 -0.2392 2.4827 7 7 0.9428 0.8299 2.6033 8 14 2.3213 -1.1201 4.0080 9 1 3.8062 -1.1206 4.0083 10 1 1.8259 -0.4203 5.2205 11 1 1.8258 -2.5200 4.0079 12 7 2.0183 -0.6906 -1.1961 13 6 2.1471 -0.0183 -2.3571 14 8 1.8582 1.1583 -2.4117 15 6 2.6435 -0.7303 -3.5891 16 6 2.6898 0.2514 -4.7617 17 1 1.7093 0.7095 -4.8916 18 6 3.0787 -0.4967 -6.0397 19 6 3.1813 0.5023 -7.1955 20 6 4.2054 1.5826 -6.8402 21 7 3.7878 2.2696 -5.6113 22 6 3.7281 1.3390 -4.4770 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 0.7081 1.1611 3.4843 27 1 2.2491 -1.6318 -1.1525 28 1 3.6436 -1.1225 -3.4039 29 1 1.9697 -1.5525 -3.8299 30 1 4.0414 -0.9874 -5.8959 31 1 2.3190 -1.2436 -6.2701 32 1 2.2086 0.9645 -7.3644 33 1 3.4992 -0.0173 -8.0994 34 1 4.2704 2.3036 -7.6551 35 1 5.1808 1.1214 -6.6850 36 1 2.9038 2.7381 -5.7416 37 1 3.4464 1.8829 -3.5753 38 1 4.7057 0.8789 -4.3327 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054309052.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:48 Heat of formation + Delta-G solvation = -84.311232 kcal Electronic energy + Delta-G solvation = -17572.322341 eV Core-core repulsion = 14833.445073 eV Total energy + Delta-G solvation = -2738.877267 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.93634 -39.32093 -36.69189 -34.33033 -33.96837 -32.25621 -30.99544 -27.99164 -27.31904 -24.50025 -23.70571 -22.36277 -21.16112 -20.92066 -18.80479 -17.40941 -17.12528 -16.88227 -16.46328 -16.02813 -15.57777 -15.27615 -14.88216 -14.62254 -14.35606 -13.78820 -13.41274 -13.36501 -13.08319 -12.99358 -12.84761 -12.70924 -12.55272 -12.26557 -12.17215 -12.08714 -11.93397 -11.52501 -11.45559 -11.11082 -10.62053 -10.44594 -9.68142 -9.22044 -8.17188 -6.35066 1.44797 1.46977 1.54807 1.90552 2.36792 2.69909 3.13029 3.42071 3.80384 3.84818 3.98127 4.16622 4.21934 4.39338 4.50491 4.67334 4.72227 4.74052 4.77569 4.80214 4.91495 5.04435 5.08957 5.10026 5.17781 5.19161 5.32330 5.43990 5.47506 5.63884 5.70939 5.92818 6.11119 6.15638 6.47017 6.73528 7.03272 7.33516 7.63813 8.88876 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.050674 B = 0.004589 C = 0.004566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 552.413575 B = 6100.221488 C = 6130.366749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.270 3.730 3 H -0.004 1.004 4 C -0.548 4.548 5 H 0.073 0.927 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.973 3.027 9 H -0.270 1.270 10 H -0.287 1.287 11 H -0.263 1.263 12 N -0.709 5.709 13 C 0.492 3.508 14 O -0.596 6.596 15 C -0.122 4.122 16 C -0.100 4.100 17 H 0.054 0.946 18 C -0.109 4.109 19 C -0.153 4.153 20 C 0.053 3.947 21 N -0.698 5.698 22 C 0.061 3.939 23 H 0.039 0.961 24 H 0.064 0.936 25 H 0.010 0.990 26 H 0.265 0.735 27 H 0.404 0.596 28 H 0.112 0.888 29 H 0.114 0.886 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.056 0.944 33 H 0.086 0.914 34 H 0.083 0.917 35 H 0.073 0.927 36 H 0.339 0.661 37 H 0.057 0.943 38 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.060 -6.156 -16.836 18.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.166 3.834 3 H 0.014 0.986 4 C -0.586 4.586 5 H 0.091 0.909 6 C -0.187 4.187 7 N -0.557 5.557 8 Si 0.797 3.203 9 H -0.196 1.196 10 H -0.212 1.212 11 H -0.188 1.188 12 N -0.358 5.358 13 C 0.280 3.720 14 O -0.478 6.478 15 C -0.163 4.163 16 C -0.121 4.121 17 H 0.072 0.928 18 C -0.147 4.147 19 C -0.192 4.192 20 C -0.076 4.076 21 N -0.325 5.325 22 C -0.069 4.069 23 H 0.058 0.942 24 H 0.083 0.917 25 H 0.029 0.971 26 H 0.074 0.926 27 H 0.239 0.761 28 H 0.130 0.870 29 H 0.132 0.868 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.075 0.925 33 H 0.105 0.895 34 H 0.102 0.898 35 H 0.091 0.909 36 H 0.157 0.843 37 H 0.075 0.925 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 5.426 -4.974 -16.570 18.132 hybrid contribution -0.808 -0.798 1.020 1.527 sum 4.618 -5.772 -15.550 17.218 Atomic orbital electron populations 1.21883 0.98501 0.99311 0.99401 1.18291 0.90978 0.91854 0.82278 0.98649 1.21539 1.32601 1.13575 0.90894 0.90864 1.25819 0.94865 0.95575 1.02396 1.70054 1.37000 1.24002 1.24636 0.85389 0.78650 0.78707 0.77533 1.19555 1.21224 1.18808 1.46328 1.65390 1.14215 1.09913 1.21513 0.77348 0.87282 0.85826 1.90606 1.52821 1.18377 1.85951 1.21706 1.04352 0.99371 0.90845 1.21527 0.99620 0.96375 0.94537 0.92792 1.21610 1.02526 0.97750 0.92794 1.22222 0.99991 0.98059 0.98906 1.22131 0.98303 0.95613 0.91534 1.60651 1.36378 1.30232 1.05287 1.22080 0.97837 0.92978 0.93979 0.94162 0.91682 0.97060 0.92586 0.76075 0.87027 0.86801 0.90652 0.90716 0.92509 0.89521 0.89842 0.90863 0.84330 0.92483 0.91303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.80 9.26 71.98 0.67 -6.13 16 2 C 0.27 14.14 2.56 44.24 0.11 14.26 16 3 H 0.00 -0.27 7.58 -2.38 -0.02 -0.29 16 4 C -0.55 -29.19 8.73 25.60 0.22 -28.97 16 5 H 0.07 3.62 7.74 -2.91 -0.02 3.59 16 6 C 0.01 0.72 5.30 84.65 0.45 1.17 16 7 N -0.92 -53.31 11.32 21.45 0.24 -53.06 16 8 Si 0.97 42.12 29.54 68.60 2.03 44.14 16 9 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 10 H -0.29 -12.36 7.11 99.48 0.71 -11.65 16 11 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 12 N -0.71 -29.16 5.07 -446.09 -2.26 -31.42 16 13 C 0.49 19.03 7.52 87.66 0.66 19.69 16 14 O -0.60 -28.50 13.63 -3.04 -0.04 -28.54 16 15 C -0.12 -3.10 5.18 29.85 0.15 -2.94 16 16 C -0.10 -2.48 1.98 -10.75 -0.02 -2.50 16 17 H 0.05 1.59 7.96 -2.38 -0.02 1.57 16 18 C -0.11 -1.90 5.29 30.67 0.16 -1.74 16 19 C -0.15 -2.43 6.08 30.64 0.19 -2.25 16 20 C 0.05 0.98 6.55 86.32 0.57 1.55 16 21 N -0.70 -17.61 6.87 -513.98 -3.53 -21.14 16 22 C 0.06 1.75 5.57 86.33 0.48 2.23 16 23 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 24 H 0.06 3.67 6.07 -2.39 -0.01 3.65 16 25 H 0.01 0.53 8.14 -2.38 -0.02 0.51 16 26 H 0.27 14.58 8.31 -92.71 -0.77 13.81 16 27 H 0.40 13.78 8.54 -92.71 -0.79 12.99 16 28 H 0.11 2.33 8.14 -2.38 -0.02 2.31 16 29 H 0.11 2.30 8.14 -2.39 -0.02 2.28 16 30 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.09 1.05 8.14 -2.38 -0.02 1.03 16 34 H 0.08 1.32 8.14 -2.38 -0.02 1.30 16 35 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.34 8.56 8.86 -89.70 -0.79 7.76 16 37 H 0.06 2.14 5.97 -2.39 -0.01 2.13 16 38 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 Total: -1.00 -66.76 302.35 -0.46 -67.22 By element: Atomic # 1 Polarization: 28.97 SS G_CDS: -0.54 Total: 28.43 kcal Atomic # 6 Polarization: -9.27 SS G_CDS: 3.64 Total: -5.63 kcal Atomic # 7 Polarization: -100.07 SS G_CDS: -5.55 Total: -105.62 kcal Atomic # 8 Polarization: -28.50 SS G_CDS: -0.04 Total: -28.54 kcal Atomic # 14 Polarization: 42.12 SS G_CDS: 2.03 Total: 44.14 kcal Total: -66.76 -0.46 -67.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054309052.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.091 kcal (2) G-P(sol) polarization free energy of solvation -66.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds