Wall clock time and date at job start Mon Mar 30 2020 03:20:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47098 * 2 1 4 4 C 1.50696 * 109.47087 * 120.00096 * 2 1 3 5 5 H 1.08003 * 120.00092 * 120.00284 * 4 2 1 6 6 C 1.37879 * 120.00258 * 299.99637 * 4 2 1 7 7 N 1.31512 * 120.00015 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00053 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.47344 * 60.00162 * 8 6 4 10 10 H 1.48499 * 109.47221 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.47148 * 300.00373 * 8 6 4 12 12 N 1.46498 * 109.47257 * 240.00065 * 2 1 3 13 13 C 1.34777 * 119.99828 * 84.72116 * 12 2 1 14 14 O 1.21283 * 120.00222 * 0.28168 * 13 12 2 15 15 C 1.50703 * 120.00290 * 180.27728 * 13 12 2 16 16 C 1.52990 * 109.47398 * 180.02562 * 15 13 12 17 17 H 1.09004 * 109.50170 * 55.00136 * 16 15 13 18 18 C 1.53120 * 109.50680 * 175.07874 * 16 15 13 19 19 C 1.53120 * 109.16470 * 177.55827 * 18 16 15 20 20 C 1.53032 * 109.30764 * 302.40953 * 19 18 16 21 21 N 1.46846 * 109.52865 * 59.15281 * 20 19 18 22 22 C 1.46846 * 111.19880 * 298.26087 * 21 20 19 23 23 H 1.08995 * 109.47098 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47054 * 299.99648 * 1 2 3 25 25 H 1.08996 * 109.47245 * 59.99861 * 1 2 3 26 26 H 0.96996 * 120.00441 * 179.97438 * 7 6 4 27 27 H 0.97001 * 120.00384 * 265.00562 * 12 2 1 28 28 H 1.08998 * 109.46954 * 300.00581 * 15 13 12 29 29 H 1.09002 * 109.46946 * 59.99717 * 15 13 12 30 30 H 1.09001 * 109.52231 * 297.50485 * 18 16 15 31 31 H 1.09000 * 109.51856 * 57.69049 * 18 16 15 32 32 H 1.09001 * 109.50576 * 182.44395 * 19 18 16 33 33 H 1.09000 * 109.46829 * 62.34255 * 19 18 16 34 34 H 1.09010 * 109.46087 * 299.13769 * 20 19 18 35 35 H 1.08998 * 109.46464 * 179.17541 * 20 19 18 36 36 H 1.00906 * 110.99563 * 62.35934 * 21 20 19 37 37 H 1.08996 * 109.46075 * 301.72432 * 22 21 20 38 38 H 1.08998 * 109.45984 * 181.75525 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9429 0.8296 2.6035 8 14 2.3214 -1.1204 4.0079 9 1 3.8064 -1.1211 4.0081 10 1 1.8261 -0.4207 5.2204 11 1 1.8258 -2.5203 4.0076 12 7 2.0184 -0.6906 -1.1962 13 6 2.1417 -0.0196 -2.3585 14 8 1.8533 1.1572 -2.4129 15 6 2.6382 -0.7314 -3.5905 16 6 2.6849 0.2505 -4.7628 17 1 3.2881 1.1161 -4.4887 18 6 3.3039 -0.4383 -5.9823 19 6 3.2910 0.5311 -7.1675 20 6 1.8530 0.9778 -7.4402 21 7 1.3069 1.6316 -6.2441 22 6 1.2644 0.7054 -5.1054 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 0.7083 1.1608 3.4844 27 1 2.2490 -1.6318 -1.1527 28 1 3.6381 -1.1236 -3.4054 29 1 1.9643 -1.5536 -3.8314 30 1 4.3310 -0.7249 -5.7565 31 1 2.7236 -1.3264 -6.2325 32 1 3.6907 0.0320 -8.0503 33 1 3.9039 1.4012 -6.9319 34 1 1.2438 0.1089 -7.6893 35 1 1.8426 1.6795 -8.2743 36 1 1.8313 2.4626 -6.0150 37 1 0.6581 -0.1622 -5.3654 38 1 0.8267 1.2092 -4.2436 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054309054.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:53 Heat of formation + Delta-G solvation = -62.744520 kcal Electronic energy + Delta-G solvation = -17578.736497 eV Core-core repulsion = 14840.794432 eV Total energy + Delta-G solvation = -2737.942065 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.58311 -38.07169 -34.81644 -32.93426 -32.31726 -31.34402 -29.17242 -26.74028 -25.23597 -23.53532 -22.41423 -20.87369 -20.02754 -19.31728 -17.02726 -15.99055 -15.58717 -15.40469 -15.17059 -14.69246 -14.29650 -13.97393 -13.64154 -13.24389 -12.44596 -12.36647 -12.28906 -12.05088 -11.84231 -11.48641 -11.26017 -11.08842 -11.01856 -10.92098 -10.66721 -10.61470 -10.40217 -10.31121 -10.22095 -9.04666 -8.88289 -8.53022 -8.26137 -7.87250 -6.11483 -4.20966 3.25459 3.30813 3.31851 3.44169 4.09224 4.35559 4.42194 4.71888 4.84434 4.95856 5.05279 5.20543 5.27770 5.41123 5.50462 5.58323 5.66636 5.73833 5.83352 5.85241 5.91795 6.03991 6.10609 6.37746 6.50796 6.84544 6.98915 7.11753 7.17134 7.45450 7.49637 7.58199 7.70970 7.93323 8.16765 8.70021 8.79556 9.17127 9.46903 10.94394 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.057417 B = 0.004613 C = 0.004407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 487.539608 B = 6068.037500 C = 6352.453479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.264 3.736 3 H 0.048 0.952 4 C -0.535 4.535 5 H 0.060 0.940 6 C 0.066 3.934 7 N -0.883 5.883 8 Si 0.901 3.099 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.711 5.711 13 C 0.499 3.501 14 O -0.554 6.554 15 C -0.136 4.136 16 C -0.105 4.105 17 H 0.076 0.924 18 C -0.116 4.116 19 C -0.157 4.157 20 C 0.055 3.945 21 N -0.686 5.686 22 C 0.056 3.944 23 H 0.025 0.975 24 H 0.089 0.911 25 H 0.015 0.985 26 H 0.265 0.735 27 H 0.388 0.612 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.061 0.939 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.341 0.659 37 H 0.063 0.937 38 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.638 -3.790 -15.645 16.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.162 3.838 3 H 0.065 0.935 4 C -0.573 4.573 5 H 0.078 0.922 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.729 3.271 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.358 5.358 13 C 0.284 3.716 14 O -0.434 6.434 15 C -0.177 4.177 16 C -0.126 4.126 17 H 0.095 0.905 18 C -0.153 4.153 19 C -0.196 4.196 20 C -0.075 4.075 21 N -0.313 5.313 22 C -0.073 4.073 23 H 0.044 0.956 24 H 0.108 0.892 25 H 0.034 0.966 26 H 0.075 0.925 27 H 0.220 0.780 28 H 0.104 0.896 29 H 0.104 0.896 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.159 0.841 37 H 0.081 0.919 38 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 2.649 -2.915 -15.684 16.171 hybrid contribution 1.495 -1.139 1.178 2.218 sum 4.144 -4.054 -14.506 15.621 Atomic orbital electron populations 1.22067 0.98506 0.99028 1.00883 1.18714 0.90996 0.93950 0.80133 0.93457 1.21193 1.32492 1.13210 0.90431 0.92210 1.24888 0.94816 0.94951 0.99038 1.69891 1.35783 1.22446 1.23966 0.86513 0.79141 0.79600 0.81863 1.20208 1.21111 1.20175 1.46555 1.65104 1.13549 1.10627 1.20468 0.78623 0.87634 0.84839 1.90611 1.51422 1.16180 1.85148 1.21692 1.02680 0.99349 0.93972 1.21590 0.99293 0.98437 0.93255 0.90515 1.21644 1.00770 0.98251 0.94682 1.22259 0.98995 0.99851 0.98525 1.22033 0.92837 0.99105 0.93552 1.60678 1.57172 1.08603 1.04872 1.22278 0.94631 0.96419 0.93953 0.95570 0.89233 0.96621 0.92526 0.78028 0.89649 0.89612 0.92071 0.91952 0.91776 0.92062 0.91232 0.91184 0.84140 0.91889 0.88142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.66 9.26 37.16 0.34 -3.32 16 2 C 0.26 6.74 2.56 -69.09 -0.18 6.57 16 3 H 0.05 1.40 7.58 -51.93 -0.39 1.00 16 4 C -0.53 -14.24 8.73 -34.44 -0.30 -14.54 16 5 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 6 C 0.07 1.79 5.30 -17.82 -0.09 1.70 16 7 N -0.88 -25.03 11.32 55.43 0.63 -24.40 16 8 Si 0.90 20.68 29.54 -169.99 -5.02 15.66 16 9 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 10 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 12 N -0.71 -14.67 5.07 -54.94 -0.28 -14.95 16 13 C 0.50 9.63 7.52 -10.98 -0.08 9.55 16 14 O -0.55 -12.69 13.64 5.55 0.08 -12.61 16 15 C -0.14 -1.87 5.18 -27.89 -0.14 -2.01 16 16 C -0.11 -1.38 1.98 -90.54 -0.18 -1.56 16 17 H 0.08 1.15 7.96 -51.93 -0.41 0.73 16 18 C -0.12 -1.20 5.29 -26.61 -0.14 -1.34 16 19 C -0.16 -1.49 6.08 -26.65 -0.16 -1.65 16 20 C 0.05 0.56 6.55 -3.84 -0.03 0.53 16 21 N -0.69 -8.71 6.87 -113.82 -0.78 -9.50 16 22 C 0.06 0.80 5.57 -3.84 -0.02 0.78 16 23 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 24 H 0.09 2.44 6.07 -51.93 -0.32 2.13 16 25 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 26 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 27 H 0.39 6.92 8.54 -40.82 -0.35 6.57 16 28 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 29 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.07 0.71 8.14 -51.92 -0.42 0.28 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.34 4.22 8.86 -39.29 -0.35 3.87 16 37 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.10 1.77 5.98 -51.93 -0.31 1.46 16 LS Contribution 302.35 15.07 4.56 4.56 Total: -1.00 -29.68 302.35 -8.13 -37.81 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: -6.32 Total: 8.74 kcal Atomic # 6 Polarization: -4.32 SS G_CDS: -0.98 Total: -5.31 kcal Atomic # 7 Polarization: -48.41 SS G_CDS: -0.43 Total: -48.84 kcal Atomic # 8 Polarization: -12.69 SS G_CDS: 0.08 Total: -12.61 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -29.68 -8.13 -37.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054309054.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.936 kcal (2) G-P(sol) polarization free energy of solvation -29.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds