Wall clock time and date at job start Mon Mar 30 2020 03:20:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47098 * 2 1 4 4 C 1.50696 * 109.47087 * 120.00096 * 2 1 3 5 5 H 1.08003 * 120.00092 * 120.00284 * 4 2 1 6 6 C 1.37879 * 120.00258 * 299.99637 * 4 2 1 7 7 N 1.31512 * 120.00015 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00053 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.47344 * 60.00162 * 8 6 4 10 10 H 1.48499 * 109.47221 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.47148 * 300.00373 * 8 6 4 12 12 N 1.46498 * 109.47257 * 240.00065 * 2 1 3 13 13 C 1.34777 * 119.99828 * 84.72116 * 12 2 1 14 14 O 1.21283 * 120.00222 * 0.28168 * 13 12 2 15 15 C 1.50703 * 120.00290 * 180.27728 * 13 12 2 16 16 C 1.52990 * 109.47398 * 180.02562 * 15 13 12 17 17 H 1.09004 * 109.50170 * 55.00136 * 16 15 13 18 18 C 1.53120 * 109.50680 * 175.07874 * 16 15 13 19 19 C 1.53120 * 109.16470 * 177.55827 * 18 16 15 20 20 C 1.53032 * 109.30764 * 302.40953 * 19 18 16 21 21 N 1.46846 * 109.52865 * 59.15281 * 20 19 18 22 22 C 1.46846 * 111.19880 * 298.26087 * 21 20 19 23 23 H 1.08995 * 109.47098 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47054 * 299.99648 * 1 2 3 25 25 H 1.08996 * 109.47245 * 59.99861 * 1 2 3 26 26 H 0.96996 * 120.00441 * 179.97438 * 7 6 4 27 27 H 0.97001 * 120.00384 * 265.00562 * 12 2 1 28 28 H 1.08998 * 109.46954 * 300.00581 * 15 13 12 29 29 H 1.09002 * 109.46946 * 59.99717 * 15 13 12 30 30 H 1.09001 * 109.52231 * 297.50485 * 18 16 15 31 31 H 1.09000 * 109.51856 * 57.69049 * 18 16 15 32 32 H 1.09001 * 109.50576 * 182.44395 * 19 18 16 33 33 H 1.09000 * 109.46829 * 62.34255 * 19 18 16 34 34 H 1.09010 * 109.46087 * 299.13769 * 20 19 18 35 35 H 1.08998 * 109.46464 * 179.17541 * 20 19 18 36 36 H 1.00906 * 110.99563 * 62.35934 * 21 20 19 37 37 H 1.08996 * 109.46075 * 301.72432 * 22 21 20 38 38 H 1.08998 * 109.45984 * 181.75525 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9429 0.8296 2.6035 8 14 2.3214 -1.1204 4.0079 9 1 3.8064 -1.1211 4.0081 10 1 1.8261 -0.4207 5.2204 11 1 1.8258 -2.5203 4.0076 12 7 2.0184 -0.6906 -1.1962 13 6 2.1417 -0.0196 -2.3585 14 8 1.8533 1.1572 -2.4129 15 6 2.6382 -0.7314 -3.5905 16 6 2.6849 0.2505 -4.7628 17 1 3.2881 1.1161 -4.4887 18 6 3.3039 -0.4383 -5.9823 19 6 3.2910 0.5311 -7.1675 20 6 1.8530 0.9778 -7.4402 21 7 1.3069 1.6316 -6.2441 22 6 1.2644 0.7054 -5.1054 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 0.7083 1.1608 3.4844 27 1 2.2490 -1.6318 -1.1527 28 1 3.6381 -1.1236 -3.4054 29 1 1.9643 -1.5536 -3.8314 30 1 4.3310 -0.7249 -5.7565 31 1 2.7236 -1.3264 -6.2325 32 1 3.6907 0.0320 -8.0503 33 1 3.9039 1.4012 -6.9319 34 1 1.2438 0.1089 -7.6893 35 1 1.8426 1.6795 -8.2743 36 1 1.8313 2.4626 -6.0150 37 1 0.6581 -0.1622 -5.3654 38 1 0.8267 1.2092 -4.2436 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054309054.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:53 Heat of formation + Delta-G solvation = -84.345072 kcal Electronic energy + Delta-G solvation = -17579.673167 eV Core-core repulsion = 14840.794432 eV Total energy + Delta-G solvation = -2738.878735 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.93652 -39.31885 -36.69150 -34.33129 -33.96814 -32.25496 -30.99771 -27.98156 -27.32125 -24.49827 -23.71619 -22.35653 -21.14423 -20.92917 -18.81030 -17.41366 -17.16494 -16.80999 -16.50483 -15.97925 -15.55353 -15.39133 -14.79885 -14.65916 -14.31438 -13.82220 -13.43838 -13.34165 -13.04367 -12.95433 -12.92200 -12.78292 -12.44487 -12.26452 -12.16471 -12.11111 -11.93401 -11.52336 -11.46530 -11.11084 -10.64066 -10.41789 -9.68678 -9.22139 -8.17316 -6.35279 1.44561 1.46692 1.54614 1.90532 2.36560 2.69909 3.12796 3.42213 3.80285 3.84780 3.98327 4.16617 4.22116 4.39376 4.50681 4.67198 4.72586 4.73947 4.77704 4.80461 4.92478 5.04465 5.08956 5.10835 5.17535 5.19239 5.32701 5.44374 5.47140 5.63760 5.71483 5.92767 6.11226 6.15845 6.46629 6.73361 7.03294 7.33288 7.63786 8.88727 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.057417 B = 0.004613 C = 0.004407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 487.539608 B = 6068.037500 C = 6352.453479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.270 3.730 3 H -0.005 1.005 4 C -0.548 4.548 5 H 0.073 0.927 6 C 0.013 3.987 7 N -0.918 5.918 8 Si 0.973 3.027 9 H -0.270 1.270 10 H -0.287 1.287 11 H -0.263 1.263 12 N -0.709 5.709 13 C 0.492 3.508 14 O -0.596 6.596 15 C -0.122 4.122 16 C -0.100 4.100 17 H 0.052 0.948 18 C -0.109 4.109 19 C -0.153 4.153 20 C 0.054 3.946 21 N -0.697 5.697 22 C 0.062 3.938 23 H 0.039 0.961 24 H 0.064 0.936 25 H 0.011 0.989 26 H 0.265 0.735 27 H 0.404 0.596 28 H 0.112 0.888 29 H 0.114 0.886 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.086 0.914 33 H 0.055 0.945 34 H 0.074 0.926 35 H 0.083 0.917 36 H 0.339 0.661 37 H 0.070 0.930 38 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.860 -6.202 -16.877 18.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.166 3.834 3 H 0.013 0.987 4 C -0.587 4.587 5 H 0.091 0.909 6 C -0.187 4.187 7 N -0.557 5.557 8 Si 0.797 3.203 9 H -0.196 1.196 10 H -0.212 1.212 11 H -0.188 1.188 12 N -0.358 5.358 13 C 0.280 3.720 14 O -0.478 6.478 15 C -0.163 4.163 16 C -0.121 4.121 17 H 0.071 0.929 18 C -0.147 4.147 19 C -0.192 4.192 20 C -0.075 4.075 21 N -0.325 5.325 22 C -0.068 4.068 23 H 0.058 0.942 24 H 0.083 0.917 25 H 0.030 0.970 26 H 0.074 0.926 27 H 0.239 0.761 28 H 0.130 0.870 29 H 0.132 0.868 30 H 0.092 0.908 31 H 0.094 0.906 32 H 0.105 0.895 33 H 0.074 0.926 34 H 0.092 0.908 35 H 0.101 0.899 36 H 0.156 0.844 37 H 0.088 0.912 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 3.887 -5.364 -16.952 18.201 hybrid contribution 1.088 -0.312 1.500 1.880 sum 4.975 -5.677 -15.452 17.197 Atomic orbital electron populations 1.21879 0.98456 0.99323 0.99426 1.18288 0.91006 0.91820 0.82266 0.98687 1.21541 1.32627 1.13582 0.90904 0.90868 1.25824 0.94864 0.95577 1.02399 1.70052 1.36977 1.24002 1.24643 0.85387 0.78637 0.78716 0.77529 1.19552 1.21218 1.18811 1.46328 1.65435 1.14269 1.09813 1.21511 0.77347 0.87304 0.85806 1.90606 1.52862 1.18433 1.85856 1.21704 1.04340 0.99438 0.90787 1.21532 0.98358 0.97785 0.94447 0.92950 1.21613 1.01328 0.98492 0.93256 1.22224 0.98279 0.99681 0.99024 1.22126 0.93387 0.99467 0.92570 1.60662 1.57988 1.08624 1.05250 1.22078 0.95287 0.96352 0.93091 0.94165 0.91724 0.96985 0.92578 0.76074 0.87026 0.86816 0.90834 0.90560 0.89527 0.92596 0.90783 0.89857 0.84364 0.91161 0.92401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.80 9.26 71.98 0.67 -6.14 16 2 C 0.27 14.16 2.56 44.24 0.11 14.27 16 3 H 0.00 -0.30 7.58 -2.39 -0.02 -0.32 16 4 C -0.55 -29.21 8.73 25.60 0.22 -28.99 16 5 H 0.07 3.61 7.74 -2.91 -0.02 3.59 16 6 C 0.01 0.72 5.30 84.66 0.45 1.17 16 7 N -0.92 -53.29 11.32 21.45 0.24 -53.05 16 8 Si 0.97 42.07 29.54 68.60 2.03 44.10 16 9 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 10 H -0.29 -12.34 7.11 99.48 0.71 -11.63 16 11 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 12 N -0.71 -29.16 5.07 -446.11 -2.26 -31.42 16 13 C 0.49 19.04 7.52 87.66 0.66 19.69 16 14 O -0.60 -28.50 13.64 -3.04 -0.04 -28.54 16 15 C -0.12 -3.10 5.18 29.85 0.15 -2.94 16 16 C -0.10 -2.50 1.98 -10.74 -0.02 -2.52 16 17 H 0.05 1.56 7.96 -2.38 -0.02 1.54 16 18 C -0.11 -1.91 5.29 30.67 0.16 -1.75 16 19 C -0.15 -2.45 6.08 30.65 0.19 -2.26 16 20 C 0.05 0.98 6.55 86.32 0.57 1.54 16 21 N -0.70 -17.41 6.87 -514.02 -3.53 -20.94 16 22 C 0.06 1.74 5.57 86.33 0.48 2.22 16 23 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 24 H 0.06 3.65 6.07 -2.39 -0.01 3.64 16 25 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 26 H 0.27 14.58 8.31 -92.71 -0.77 13.81 16 27 H 0.40 13.78 8.54 -92.71 -0.79 12.99 16 28 H 0.11 2.31 8.14 -2.39 -0.02 2.29 16 29 H 0.11 2.32 8.14 -2.39 -0.02 2.30 16 30 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.07 1.30 8.14 -2.38 -0.02 1.28 16 35 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.34 8.51 8.86 -89.69 -0.79 7.72 16 37 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 38 H 0.06 2.14 5.98 -2.39 -0.01 2.12 16 Total: -1.00 -66.71 302.35 -0.46 -67.17 By element: Atomic # 1 Polarization: 28.92 SS G_CDS: -0.54 Total: 28.38 kcal Atomic # 6 Polarization: -9.34 SS G_CDS: 3.64 Total: -5.70 kcal Atomic # 7 Polarization: -99.86 SS G_CDS: -5.55 Total: -105.40 kcal Atomic # 8 Polarization: -28.50 SS G_CDS: -0.04 Total: -28.54 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 2.03 Total: 44.10 kcal Total: -66.71 -0.46 -67.17 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054309054.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.174 kcal (2) G-P(sol) polarization free energy of solvation -66.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds