Wall clock time and date at job start Mon Mar 30 2020 03:20:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.47216 * 2 1 4 4 C 1.50711 * 109.46964 * 240.00516 * 2 1 3 5 5 H 1.07996 * 119.99669 * 245.45594 * 4 2 1 6 6 C 1.37876 * 119.99704 * 65.46320 * 4 2 1 7 7 N 1.31511 * 120.00407 * 9.55371 * 6 4 2 8 8 Si 1.86801 * 119.99304 * 189.55840 * 6 4 2 9 9 H 1.48503 * 109.47061 * 84.99465 * 8 6 4 10 10 H 1.48500 * 109.46799 * 204.99114 * 8 6 4 11 11 H 1.48490 * 109.47485 * 324.99211 * 8 6 4 12 12 N 1.46498 * 109.47167 * 120.00740 * 2 1 3 13 13 C 1.34774 * 119.99575 * 274.99902 * 12 2 1 14 14 O 1.21279 * 120.00257 * 359.97438 * 13 12 2 15 15 C 1.50710 * 119.99796 * 180.02562 * 13 12 2 16 16 C 1.53001 * 109.47042 * 179.97438 * 15 13 12 17 17 H 1.09004 * 109.50390 * 54.92049 * 16 15 13 18 18 C 1.53116 * 109.50256 * 175.00090 * 16 15 13 19 19 C 1.53116 * 109.16277 * 177.63524 * 18 16 15 20 20 C 1.53033 * 109.30999 * 302.32396 * 19 18 16 21 21 N 1.46933 * 109.47932 * 59.15899 * 20 19 18 22 22 C 1.46848 * 111.21855 * 298.28383 * 21 20 19 23 23 H 1.08992 * 109.47074 * 303.67453 * 1 2 3 24 24 H 1.08998 * 109.47137 * 63.67650 * 1 2 3 25 25 H 1.08997 * 109.47157 * 183.67013 * 1 2 3 26 26 H 0.97001 * 120.00092 * 180.02562 * 7 6 4 27 27 H 0.96993 * 119.99964 * 94.99867 * 12 2 1 28 28 H 1.08999 * 109.47191 * 59.99580 * 15 13 12 29 29 H 1.09003 * 109.46849 * 299.99598 * 15 13 12 30 30 H 1.08997 * 109.52543 * 57.72692 * 18 16 15 31 31 H 1.09009 * 109.57212 * 297.57074 * 18 16 15 32 32 H 1.09008 * 109.50131 * 62.28357 * 19 18 16 33 33 H 1.08991 * 109.50566 * 182.35950 * 19 18 16 34 34 H 1.09004 * 109.46547 * 179.21082 * 20 19 18 35 35 H 1.08995 * 109.46760 * 299.18378 * 20 19 18 36 36 H 1.00895 * 110.98993 * 62.38643 * 21 20 19 37 37 H 1.08997 * 109.46223 * 301.72490 * 22 21 20 38 38 H 1.09004 * 109.46215 * 181.75831 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.5786 -1.6369 -1.1340 6 6 1.7946 -0.1771 -2.4797 7 7 1.2993 1.0358 -2.5935 8 14 2.1760 -1.1778 -4.0103 9 1 1.0239 -2.0607 -4.3242 10 1 2.4227 -0.2610 -5.1522 11 1 3.3843 -2.0070 -3.7712 12 7 2.0184 -0.6908 1.1961 13 6 2.1471 -0.0185 2.3570 14 8 1.8591 1.1584 2.4115 15 6 2.6500 -0.7289 3.5874 16 6 2.7019 0.2543 4.7585 17 1 1.7227 0.7144 4.8911 18 6 3.0928 -0.4931 6.0364 19 6 3.2001 0.5070 7.1908 20 6 4.2256 1.5851 6.8327 21 7 3.8059 2.2713 5.6031 22 6 3.7416 1.3395 4.4699 23 1 -0.3633 0.5698 0.8552 24 1 -0.3633 0.4557 -0.9211 25 1 -0.3633 -1.0255 0.0658 26 1 1.1317 1.4108 -3.4723 27 1 2.2490 -1.6318 1.1524 28 1 3.6493 -1.1207 3.3977 29 1 1.9777 -1.5512 3.8324 30 1 4.0541 -0.9858 5.8907 31 1 2.3330 -1.2390 6.2701 32 1 2.2287 0.9712 7.3616 33 1 3.5190 -0.0127 8.0942 34 1 4.2938 2.3064 7.6470 35 1 5.1996 1.1219 6.6754 36 1 2.9231 2.7416 5.7350 37 1 4.7179 0.8775 4.3238 38 1 3.4586 1.8830 3.5684 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054309055.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:56 Heat of formation + Delta-G solvation = -63.981436 kcal Electronic energy + Delta-G solvation = -17566.651396 eV Core-core repulsion = 14828.655695 eV Total energy + Delta-G solvation = -2737.995701 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.57572 -38.06648 -34.80205 -32.92596 -32.29869 -31.33716 -29.26257 -26.77158 -25.20516 -23.52502 -22.41572 -20.89205 -20.04700 -19.32067 -17.02050 -15.94926 -15.65338 -15.30211 -15.22299 -14.68423 -14.29194 -13.98304 -13.53702 -13.30773 -12.49302 -12.39202 -12.26321 -12.00547 -11.79986 -11.61487 -11.26802 -11.08003 -11.01479 -10.90480 -10.76797 -10.59901 -10.43804 -10.32599 -10.22316 -9.10950 -8.86542 -8.49584 -8.24926 -7.88884 -6.13902 -4.19401 3.25210 3.31916 3.33270 3.44316 4.09556 4.36290 4.42770 4.72305 4.84651 4.96054 5.05865 5.19834 5.28246 5.41344 5.51675 5.58641 5.66814 5.74251 5.83830 5.86014 5.92208 6.04642 6.10394 6.38171 6.52760 6.76052 6.89783 7.09053 7.12883 7.45379 7.46888 7.57301 7.68523 7.86446 8.08014 8.70631 8.80974 9.17279 9.47006 10.94591 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.050894 B = 0.004608 C = 0.004560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 550.031059 B = 6074.476915 C = 6138.955675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.262 3.738 3 H 0.055 0.945 4 C -0.537 4.537 5 H 0.060 0.940 6 C 0.069 3.931 7 N -0.881 5.881 8 Si 0.898 3.102 9 H -0.279 1.279 10 H -0.286 1.286 11 H -0.274 1.274 12 N -0.711 5.711 13 C 0.499 3.501 14 O -0.553 6.553 15 C -0.136 4.136 16 C -0.105 4.105 17 H 0.076 0.924 18 C -0.116 4.116 19 C -0.157 4.157 20 C 0.055 3.945 21 N -0.686 5.686 22 C 0.056 3.944 23 H 0.019 0.981 24 H 0.072 0.928 25 H 0.027 0.973 26 H 0.265 0.735 27 H 0.388 0.612 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.341 0.659 37 H 0.063 0.937 38 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.358 -4.089 15.653 16.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.160 3.840 3 H 0.073 0.927 4 C -0.575 4.575 5 H 0.079 0.921 6 C -0.135 4.135 7 N -0.518 5.518 8 Si 0.725 3.275 9 H -0.205 1.205 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.358 5.358 13 C 0.284 3.716 14 O -0.433 6.433 15 C -0.177 4.177 16 C -0.125 4.125 17 H 0.094 0.906 18 C -0.153 4.153 19 C -0.196 4.196 20 C -0.075 4.075 21 N -0.313 5.313 22 C -0.073 4.073 23 H 0.038 0.962 24 H 0.090 0.910 25 H 0.046 0.954 26 H 0.074 0.926 27 H 0.220 0.780 28 H 0.105 0.895 29 H 0.103 0.897 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.158 0.842 37 H 0.082 0.918 38 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 3.743 -2.851 15.355 16.059 hybrid contribution -0.629 -1.688 -0.708 1.936 sum 3.114 -4.539 14.647 15.647 Atomic orbital electron populations 1.22004 0.98992 0.98472 1.00450 1.18734 0.90467 0.94592 0.80236 0.92684 1.21178 1.37180 1.08644 0.90516 0.92142 1.24889 0.94981 0.94614 0.99036 1.69983 1.43833 1.13730 1.24214 0.86531 0.78703 0.79958 0.82319 1.20451 1.21150 1.19912 1.46535 1.65100 1.13501 1.10683 1.20470 0.78617 0.87626 0.84838 1.90614 1.51383 1.16097 1.85191 1.21695 1.02695 0.99247 0.94055 1.21589 1.01172 0.96664 0.93118 0.90565 1.21643 1.01524 0.97673 0.94508 1.22257 1.00485 0.98485 0.98388 1.22049 0.97960 0.95022 0.92510 1.60689 1.36373 1.29798 1.04453 1.22283 0.97340 0.92769 0.94911 0.96224 0.90957 0.95373 0.92559 0.78044 0.89534 0.89720 0.91927 0.92118 0.92084 0.91793 0.91179 0.91212 0.84172 0.91828 0.88106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.45 9.36 37.16 0.35 -3.10 16 2 C 0.26 6.65 2.42 -69.08 -0.17 6.48 16 3 H 0.06 1.63 7.52 -51.93 -0.39 1.24 16 4 C -0.54 -14.27 8.66 -34.44 -0.30 -14.57 16 5 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 6 C 0.07 1.86 5.17 -17.82 -0.09 1.77 16 7 N -0.88 -25.17 12.16 55.43 0.67 -24.49 16 8 Si 0.90 20.67 29.55 -169.99 -5.02 15.64 16 9 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 10 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.27 -6.20 7.11 56.52 0.40 -5.79 16 12 N -0.71 -14.61 5.07 -54.93 -0.28 -14.88 16 13 C 0.50 9.61 7.52 -10.98 -0.08 9.53 16 14 O -0.55 -12.67 13.64 5.56 0.08 -12.59 16 15 C -0.14 -1.86 5.18 -27.88 -0.14 -2.01 16 16 C -0.10 -1.37 1.98 -90.54 -0.18 -1.55 16 17 H 0.08 1.13 7.95 -51.93 -0.41 0.72 16 18 C -0.12 -1.20 5.29 -26.61 -0.14 -1.34 16 19 C -0.16 -1.49 6.07 -26.65 -0.16 -1.65 16 20 C 0.05 0.56 6.56 -3.79 -0.02 0.54 16 21 N -0.69 -8.81 6.87 -113.75 -0.78 -9.59 16 22 C 0.06 0.81 5.57 -3.83 -0.02 0.79 16 23 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 24 H 0.07 1.92 6.83 -51.93 -0.35 1.56 16 25 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.26 7.16 8.31 -40.82 -0.34 6.83 16 27 H 0.39 6.87 8.53 -40.82 -0.35 6.52 16 28 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.59 8.14 -51.92 -0.42 0.17 16 32 H 0.06 0.59 8.14 -51.92 -0.42 0.17 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.34 4.24 8.86 -39.29 -0.35 3.89 16 37 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 38 H 0.10 1.81 5.99 -51.93 -0.31 1.50 16 LS Contribution 303.68 15.07 4.58 4.58 Total: -1.00 -29.86 303.68 -8.08 -37.94 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: -6.36 Total: 8.53 kcal Atomic # 6 Polarization: -4.16 SS G_CDS: -0.96 Total: -5.12 kcal Atomic # 7 Polarization: -48.59 SS G_CDS: -0.39 Total: -48.97 kcal Atomic # 8 Polarization: -12.67 SS G_CDS: 0.08 Total: -12.59 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -29.86 -8.08 -37.94 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054309055.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.045 kcal (2) G-P(sol) polarization free energy of solvation -29.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds