Wall clock time and date at job start Mon Mar 30 2020 03:20:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.47216 * 2 1 4 4 C 1.50711 * 109.46964 * 240.00516 * 2 1 3 5 5 H 1.07996 * 119.99669 * 245.45594 * 4 2 1 6 6 C 1.37876 * 119.99704 * 65.46320 * 4 2 1 7 7 N 1.31511 * 120.00407 * 9.55371 * 6 4 2 8 8 Si 1.86801 * 119.99304 * 189.55840 * 6 4 2 9 9 H 1.48503 * 109.47061 * 84.99465 * 8 6 4 10 10 H 1.48500 * 109.46799 * 204.99114 * 8 6 4 11 11 H 1.48490 * 109.47485 * 324.99211 * 8 6 4 12 12 N 1.46498 * 109.47167 * 120.00740 * 2 1 3 13 13 C 1.34774 * 119.99575 * 274.99902 * 12 2 1 14 14 O 1.21279 * 120.00257 * 359.97438 * 13 12 2 15 15 C 1.50710 * 119.99796 * 180.02562 * 13 12 2 16 16 C 1.53001 * 109.47042 * 179.97438 * 15 13 12 17 17 H 1.09004 * 109.50390 * 54.92049 * 16 15 13 18 18 C 1.53116 * 109.50256 * 175.00090 * 16 15 13 19 19 C 1.53116 * 109.16277 * 177.63524 * 18 16 15 20 20 C 1.53033 * 109.30999 * 302.32396 * 19 18 16 21 21 N 1.46933 * 109.47932 * 59.15899 * 20 19 18 22 22 C 1.46848 * 111.21855 * 298.28383 * 21 20 19 23 23 H 1.08992 * 109.47074 * 303.67453 * 1 2 3 24 24 H 1.08998 * 109.47137 * 63.67650 * 1 2 3 25 25 H 1.08997 * 109.47157 * 183.67013 * 1 2 3 26 26 H 0.97001 * 120.00092 * 180.02562 * 7 6 4 27 27 H 0.96993 * 119.99964 * 94.99867 * 12 2 1 28 28 H 1.08999 * 109.47191 * 59.99580 * 15 13 12 29 29 H 1.09003 * 109.46849 * 299.99598 * 15 13 12 30 30 H 1.08997 * 109.52543 * 57.72692 * 18 16 15 31 31 H 1.09009 * 109.57212 * 297.57074 * 18 16 15 32 32 H 1.09008 * 109.50131 * 62.28357 * 19 18 16 33 33 H 1.08991 * 109.50566 * 182.35950 * 19 18 16 34 34 H 1.09004 * 109.46547 * 179.21082 * 20 19 18 35 35 H 1.08995 * 109.46760 * 299.18378 * 20 19 18 36 36 H 1.00895 * 110.98993 * 62.38643 * 21 20 19 37 37 H 1.08997 * 109.46223 * 301.72490 * 22 21 20 38 38 H 1.09004 * 109.46215 * 181.75831 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.5786 -1.6369 -1.1340 6 6 1.7946 -0.1771 -2.4797 7 7 1.2993 1.0358 -2.5935 8 14 2.1760 -1.1778 -4.0103 9 1 1.0239 -2.0607 -4.3242 10 1 2.4227 -0.2610 -5.1522 11 1 3.3843 -2.0070 -3.7712 12 7 2.0184 -0.6908 1.1961 13 6 2.1471 -0.0185 2.3570 14 8 1.8591 1.1584 2.4115 15 6 2.6500 -0.7289 3.5874 16 6 2.7019 0.2543 4.7585 17 1 1.7227 0.7144 4.8911 18 6 3.0928 -0.4931 6.0364 19 6 3.2001 0.5070 7.1908 20 6 4.2256 1.5851 6.8327 21 7 3.8059 2.2713 5.6031 22 6 3.7416 1.3395 4.4699 23 1 -0.3633 0.5698 0.8552 24 1 -0.3633 0.4557 -0.9211 25 1 -0.3633 -1.0255 0.0658 26 1 1.1317 1.4108 -3.4723 27 1 2.2490 -1.6318 1.1524 28 1 3.6493 -1.1207 3.3977 29 1 1.9777 -1.5512 3.8324 30 1 4.0541 -0.9858 5.8907 31 1 2.3330 -1.2390 6.2701 32 1 2.2287 0.9712 7.3616 33 1 3.5190 -0.0127 8.0942 34 1 4.2938 2.3064 7.6470 35 1 5.1996 1.1219 6.6754 36 1 2.9231 2.7416 5.7350 37 1 4.7179 0.8775 4.3238 38 1 3.4586 1.8830 3.5684 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054309055.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:55 Heat of formation + Delta-G solvation = -85.855542 kcal Electronic energy + Delta-G solvation = -17567.599928 eV Core-core repulsion = 14828.655695 eV Total energy + Delta-G solvation = -2738.944234 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.92959 -39.31484 -36.66747 -34.32045 -33.96492 -32.25597 -31.07889 -28.00446 -27.28217 -24.49947 -23.72374 -22.37552 -21.16131 -20.91953 -18.80314 -17.39540 -17.12324 -16.87934 -16.46014 -16.00308 -15.57368 -15.28244 -14.87734 -14.61513 -14.33909 -13.86537 -13.43568 -13.37796 -13.06357 -13.02378 -12.86769 -12.67880 -12.58164 -12.33731 -12.16864 -12.06832 -11.93214 -11.52316 -11.44849 -11.15175 -10.57961 -10.45002 -9.68684 -9.21887 -8.20464 -6.34099 1.44492 1.45650 1.55391 1.91120 2.37105 2.69904 3.11776 3.41937 3.80639 3.85040 3.98300 4.16761 4.22156 4.39616 4.50583 4.67532 4.71053 4.74272 4.77785 4.78738 4.88106 5.03857 5.04990 5.09053 5.17799 5.19292 5.32261 5.43504 5.47410 5.63481 5.63616 5.92689 6.04999 6.15494 6.47080 6.75409 7.03634 7.33462 7.64412 8.88765 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.050894 B = 0.004608 C = 0.004560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 550.031059 B = 6074.476915 C = 6138.955675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.267 3.733 3 H 0.000 1.000 4 C -0.548 4.548 5 H 0.074 0.926 6 C 0.015 3.985 7 N -0.920 5.920 8 Si 0.970 3.030 9 H -0.270 1.270 10 H -0.288 1.288 11 H -0.262 1.262 12 N -0.709 5.709 13 C 0.492 3.508 14 O -0.595 6.595 15 C -0.122 4.122 16 C -0.100 4.100 17 H 0.054 0.946 18 C -0.109 4.109 19 C -0.153 4.153 20 C 0.053 3.947 21 N -0.698 5.698 22 C 0.061 3.939 23 H 0.015 0.985 24 H 0.046 0.954 25 H 0.047 0.953 26 H 0.265 0.735 27 H 0.404 0.596 28 H 0.111 0.889 29 H 0.115 0.885 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.056 0.944 33 H 0.086 0.914 34 H 0.083 0.917 35 H 0.073 0.927 36 H 0.339 0.661 37 H 0.068 0.932 38 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.210 -6.713 16.985 18.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.163 3.837 3 H 0.018 0.982 4 C -0.586 4.586 5 H 0.092 0.908 6 C -0.185 4.185 7 N -0.558 5.558 8 Si 0.794 3.206 9 H -0.195 1.195 10 H -0.214 1.214 11 H -0.186 1.186 12 N -0.358 5.358 13 C 0.280 3.720 14 O -0.477 6.477 15 C -0.163 4.163 16 C -0.120 4.120 17 H 0.073 0.927 18 C -0.147 4.147 19 C -0.192 4.192 20 C -0.076 4.076 21 N -0.326 5.326 22 C -0.069 4.069 23 H 0.034 0.966 24 H 0.065 0.935 25 H 0.066 0.934 26 H 0.074 0.926 27 H 0.239 0.761 28 H 0.129 0.871 29 H 0.133 0.867 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.075 0.925 33 H 0.105 0.895 34 H 0.102 0.898 35 H 0.091 0.909 36 H 0.157 0.843 37 H 0.087 0.913 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 4.611 -5.516 16.724 18.203 hybrid contribution -0.875 -0.786 -1.067 1.587 sum 3.736 -6.301 15.657 17.286 Atomic orbital electron populations 1.21820 0.98564 0.99238 0.98906 1.18311 0.90774 0.92265 0.82304 0.98211 1.21535 1.37108 1.08989 0.90999 0.90800 1.25820 0.94773 0.95455 1.02465 1.70139 1.45163 1.15576 1.24918 0.85398 0.79019 0.78288 0.77884 1.19521 1.21426 1.18648 1.46313 1.65422 1.14223 1.09859 1.21513 0.77368 0.87268 0.85827 1.90609 1.52877 1.18337 1.85921 1.21709 1.04286 0.99390 0.90883 1.21526 0.99603 0.96361 0.94556 0.92747 1.21611 1.02527 0.97745 0.92798 1.22219 0.99983 0.98052 0.98915 1.22143 0.98286 0.95647 0.91508 1.60667 1.36434 1.30130 1.05353 1.22074 0.97829 0.92993 0.93963 0.96615 0.93465 0.93355 0.92612 0.76062 0.87095 0.86707 0.90690 0.90663 0.92487 0.89525 0.89825 0.90888 0.84330 0.91341 0.92550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.35 9.36 71.98 0.67 -5.67 16 2 C 0.27 13.94 2.42 44.25 0.11 14.05 16 3 H 0.00 0.00 7.52 -2.39 -0.02 -0.02 16 4 C -0.55 -29.16 8.66 25.60 0.22 -28.94 16 5 H 0.07 3.64 7.74 -2.91 -0.02 3.62 16 6 C 0.02 0.82 5.17 84.65 0.44 1.26 16 7 N -0.92 -54.05 12.16 21.45 0.26 -53.78 16 8 Si 0.97 42.15 29.55 68.60 2.03 44.18 16 9 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 10 H -0.29 -12.56 7.11 99.48 0.71 -11.85 16 11 H -0.26 -10.81 7.11 99.48 0.71 -10.11 16 12 N -0.71 -28.98 5.07 -446.08 -2.26 -31.24 16 13 C 0.49 18.99 7.52 87.66 0.66 19.65 16 14 O -0.60 -28.52 13.64 -3.03 -0.04 -28.56 16 15 C -0.12 -3.08 5.18 29.85 0.15 -2.93 16 16 C -0.10 -2.48 1.98 -10.74 -0.02 -2.50 16 17 H 0.05 1.60 7.95 -2.38 -0.02 1.58 16 18 C -0.11 -1.90 5.29 30.67 0.16 -1.74 16 19 C -0.15 -2.43 6.07 30.64 0.19 -2.25 16 20 C 0.05 0.99 6.56 86.31 0.57 1.55 16 21 N -0.70 -17.73 6.87 -513.81 -3.53 -21.26 16 22 C 0.06 1.76 5.57 86.32 0.48 2.24 16 23 H 0.01 0.75 8.14 -2.39 -0.02 0.73 16 24 H 0.05 2.58 6.83 -2.39 -0.02 2.56 16 25 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 26 H 0.26 14.72 8.31 -92.71 -0.77 13.95 16 27 H 0.40 13.64 8.53 -92.71 -0.79 12.85 16 28 H 0.11 2.33 8.14 -2.39 -0.02 2.31 16 29 H 0.11 2.28 8.14 -2.39 -0.02 2.26 16 30 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 32 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 33 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.08 1.32 8.14 -2.38 -0.02 1.31 16 35 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.34 8.60 8.86 -89.70 -0.79 7.80 16 37 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 38 H 0.06 2.14 5.99 -2.38 -0.01 2.12 16 Total: -1.00 -67.45 303.68 -0.45 -67.90 By element: Atomic # 1 Polarization: 28.57 SS G_CDS: -0.54 Total: 28.04 kcal Atomic # 6 Polarization: -8.90 SS G_CDS: 3.63 Total: -5.27 kcal Atomic # 7 Polarization: -100.75 SS G_CDS: -5.53 Total: -106.28 kcal Atomic # 8 Polarization: -28.52 SS G_CDS: -0.04 Total: -28.56 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 2.03 Total: 44.18 kcal Total: -67.45 -0.45 -67.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054309055.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.956 kcal (2) G-P(sol) polarization free energy of solvation -67.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds