Wall clock time and date at job start Mon Mar 30 2020 03:56:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46904 * 109.46900 * 2 1 4 4 C 1.46907 * 110.99808 * 180.02562 * 3 2 1 5 5 C 1.52992 * 109.46999 * 180.02562 * 4 3 2 6 6 C 1.50709 * 109.47181 * 179.97438 * 5 4 3 7 7 O 1.21285 * 119.99706 * 2.77945 * 6 5 4 8 8 N 1.34768 * 120.00174 * 182.77871 * 6 5 4 9 9 C 1.46498 * 120.00138 * 5.94389 * 8 6 5 10 10 C 1.50704 * 109.47269 * 269.99964 * 9 8 6 11 11 H 1.08000 * 119.99933 * 359.97438 * 10 9 8 12 12 C 1.37878 * 119.99989 * 179.97438 * 10 9 8 13 13 N 1.31512 * 120.00201 * 359.97438 * 12 10 9 14 14 Si 1.86802 * 119.99873 * 179.97438 * 12 10 9 15 15 H 1.48496 * 109.46960 * 90.00069 * 14 12 10 16 16 H 1.48501 * 109.47034 * 210.00152 * 14 12 10 17 17 H 1.48504 * 109.46895 * 329.99716 * 14 12 10 18 18 C 1.46504 * 120.00238 * 185.94103 * 8 6 5 19 19 C 1.52999 * 117.49323 * 16.39642 * 18 8 6 20 20 C 1.52997 * 117.49780 * 307.73677 * 18 8 6 21 21 H 1.08997 * 109.47162 * 59.99534 * 1 2 3 22 22 H 1.09000 * 109.46791 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.46478 * 299.99814 * 1 2 3 24 24 H 1.08997 * 109.47163 * 240.00170 * 2 1 3 25 25 H 1.08995 * 109.47186 * 119.99687 * 2 1 3 26 26 H 1.00892 * 111.00129 * 56.05281 * 3 2 1 27 27 H 1.09002 * 109.47178 * 59.99511 * 4 3 2 28 28 H 1.09000 * 109.46868 * 300.00120 * 4 3 2 29 29 H 1.09002 * 109.47693 * 59.99657 * 5 4 3 30 30 H 1.09006 * 109.46942 * 299.99412 * 5 4 3 31 31 H 1.09005 * 109.47300 * 29.99591 * 9 8 6 32 32 H 1.09001 * 109.47811 * 149.99636 * 9 8 6 33 33 H 0.97004 * 120.00219 * 180.02562 * 13 12 10 34 34 H 1.08995 * 115.55158 * 162.06234 * 18 8 6 35 35 H 1.08997 * 117.50631 * 359.97438 * 19 18 8 36 36 H 1.08998 * 117.49581 * 145.02355 * 19 18 8 37 37 H 1.08993 * 117.50284 * 214.97569 * 20 18 8 38 38 H 1.08999 * 117.49993 * 359.97438 * 20 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4882 1.4242 -0.0006 5 6 3.9595 2.8798 0.0000 6 6 5.4660 2.9200 0.0001 7 8 6.1002 1.8875 -0.0514 8 7 6.1085 4.1033 0.0572 9 6 5.3487 5.3409 0.2503 10 6 4.9569 5.9044 -1.0914 11 1 5.2455 5.3922 -1.9973 12 6 4.2301 7.0739 -1.1622 13 7 3.8783 7.6974 -0.0590 14 14 3.7452 7.7729 -2.8253 15 1 2.4270 7.2209 -3.2288 16 1 3.6553 9.2523 -2.7333 17 1 4.7679 7.4010 -3.8358 18 6 7.5669 4.1521 -0.0738 19 6 8.2662 2.9182 -0.6475 20 6 8.3893 3.2444 0.8430 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3632 0.5138 0.8901 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 1.6443 1.9013 0.7814 27 1 3.8648 0.9203 -0.8908 28 1 3.8655 0.9201 0.8891 29 1 3.5829 3.3833 0.8904 30 1 3.5822 3.3842 -0.8896 31 1 4.4511 5.1292 0.8315 32 1 5.9640 6.0658 0.7832 33 1 3.3666 8.5200 -0.1089 34 1 7.9842 5.1280 -0.3219 35 1 7.6414 2.0699 -0.9271 36 1 9.1439 3.0823 -1.2726 37 1 9.3478 3.6229 1.1978 38 1 7.8453 2.6112 1.5439 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000061297101.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:56:05 Heat of formation + Delta-G solvation = -10.760366 kcal Electronic energy + Delta-G solvation = -17539.473267 eV Core-core repulsion = 14803.785404 eV Total energy + Delta-G solvation = -2735.687863 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.63178 -36.71391 -35.61166 -34.21465 -32.25578 -31.64531 -28.19518 -27.02750 -23.51273 -22.80432 -21.99742 -21.80871 -21.10659 -18.22736 -16.67005 -16.20286 -15.94925 -15.51999 -14.80005 -14.60220 -14.38791 -13.86706 -13.65624 -13.32728 -12.75798 -12.45787 -12.22653 -11.82169 -11.73556 -11.59365 -11.28052 -11.19107 -11.01155 -10.84322 -10.82398 -10.62718 -10.41068 -10.21677 -9.70733 -9.58345 -8.72180 -8.52721 -8.28126 -7.51972 -6.18154 -4.25756 3.24597 3.29131 3.31773 3.36617 3.76038 4.31733 4.42945 4.55916 5.07492 5.14529 5.24074 5.30871 5.43347 5.50384 5.52037 5.59122 5.66114 5.77568 5.80106 6.00365 6.04028 6.14014 6.15013 6.29531 6.36711 6.49752 6.59513 6.78482 6.92310 7.16212 7.18614 7.52132 7.61551 7.76734 8.04231 8.32607 8.79469 9.00742 9.42427 10.88380 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.013501 B = 0.008368 C = 0.005603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2073.493115 B = 3345.118943 C = 4996.065665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.055 3.945 3 N -0.692 5.692 4 C 0.078 3.922 5 C -0.132 4.132 6 C 0.519 3.481 7 O -0.571 6.571 8 N -0.567 5.567 9 C 0.239 3.761 10 C -0.537 4.537 11 H 0.062 0.938 12 C 0.066 3.934 13 N -0.892 5.892 14 Si 0.897 3.103 15 H -0.278 1.278 16 H -0.285 1.285 17 H -0.273 1.273 18 C 0.088 3.912 19 C -0.199 4.199 20 C -0.195 4.195 21 H 0.063 0.937 22 H 0.056 0.944 23 H 0.052 0.948 24 H 0.070 0.930 25 H 0.025 0.975 26 H 0.340 0.660 27 H 0.076 0.924 28 H 0.031 0.969 29 H 0.087 0.913 30 H 0.112 0.888 31 H 0.041 0.959 32 H 0.037 0.963 33 H 0.265 0.735 34 H 0.125 0.875 35 H 0.135 0.865 36 H 0.079 0.921 37 H 0.086 0.914 38 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.233 -9.364 1.652 9.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.075 4.075 3 N -0.324 5.324 4 C -0.051 4.051 5 C -0.172 4.172 6 C 0.308 3.692 7 O -0.454 6.454 8 N -0.295 5.295 9 C 0.120 3.880 10 C -0.576 4.576 11 H 0.080 0.920 12 C -0.137 4.137 13 N -0.530 5.530 14 Si 0.724 3.276 15 H -0.203 1.203 16 H -0.211 1.211 17 H -0.198 1.198 18 C -0.017 4.017 19 C -0.236 4.236 20 C -0.234 4.234 21 H 0.083 0.917 22 H 0.075 0.925 23 H 0.071 0.929 24 H 0.088 0.912 25 H 0.044 0.956 26 H 0.157 0.843 27 H 0.094 0.906 28 H 0.049 0.951 29 H 0.106 0.894 30 H 0.130 0.870 31 H 0.058 0.942 32 H 0.055 0.945 33 H 0.075 0.925 34 H 0.142 0.858 35 H 0.152 0.848 36 H 0.098 0.902 37 H 0.105 0.895 38 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -1.080 -9.610 1.020 9.724 hybrid contribution -0.097 0.509 0.075 0.523 sum -1.177 -9.101 1.095 9.242 Atomic orbital electron populations 1.21773 0.95160 1.01354 1.02487 1.21883 0.95425 0.89810 1.00341 1.60456 1.08538 1.13182 1.50174 1.21656 0.86202 0.96054 1.01234 1.21555 0.92497 0.97300 1.05869 1.20493 0.90176 0.82895 0.75628 1.90434 1.68270 1.33875 1.52859 1.47677 1.04952 1.08489 1.68395 1.19471 0.91336 0.79881 0.97358 1.21488 1.35106 1.08306 0.92688 0.91997 1.24934 0.95458 0.96453 0.96883 1.69920 1.38038 1.18084 1.26988 0.86507 0.79133 0.78092 0.83843 1.20345 1.21122 1.19812 1.21538 0.80610 0.95861 1.03729 1.23750 1.02158 1.02176 0.95541 1.23179 1.01145 1.04809 0.94264 0.91748 0.92487 0.92881 0.91157 0.95649 0.84255 0.90586 0.95116 0.89429 0.87031 0.94150 0.94521 0.92509 0.85751 0.84789 0.90221 0.89529 0.89096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 10.17 37.16 0.38 -1.13 16 2 C 0.05 0.65 6.41 -3.82 -0.02 0.63 16 3 N -0.69 -9.80 6.50 -113.78 -0.74 -10.54 16 4 C 0.08 1.25 4.98 -3.82 -0.02 1.23 16 5 C -0.13 -2.41 4.74 -27.88 -0.13 -2.54 16 6 C 0.52 10.66 7.46 -10.99 -0.08 10.58 16 7 O -0.57 -12.18 11.73 5.55 0.07 -12.11 16 8 N -0.57 -12.08 2.82 -167.47 -0.47 -12.55 16 9 C 0.24 5.66 4.96 -5.19 -0.03 5.63 16 10 C -0.54 -13.89 9.28 -34.44 -0.32 -14.21 16 11 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 12 C 0.07 1.73 5.46 -17.82 -0.10 1.63 16 13 N -0.89 -24.44 13.29 55.43 0.74 -23.70 16 14 Si 0.90 20.58 29.54 -169.99 -5.02 15.56 16 15 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 16 H -0.29 -6.51 7.11 56.52 0.40 -6.10 16 17 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 18 C 0.09 1.70 6.60 -67.93 -0.45 1.25 16 19 C -0.20 -3.56 9.63 -26.69 -0.26 -3.82 16 20 C -0.20 -3.35 9.88 -26.69 -0.26 -3.62 16 21 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 22 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 23 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 24 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 26 H 0.34 4.48 8.73 -39.30 -0.34 4.13 16 27 H 0.08 1.29 8.07 -51.93 -0.42 0.87 16 28 H 0.03 0.49 8.12 -51.93 -0.42 0.07 16 29 H 0.09 1.55 7.08 -51.93 -0.37 1.19 16 30 H 0.11 2.22 8.04 -51.93 -0.42 1.80 16 31 H 0.04 0.98 6.41 -51.93 -0.33 0.64 16 32 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 33 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 34 H 0.12 2.33 8.14 -51.93 -0.42 1.91 16 35 H 0.13 2.69 5.22 -52.12 -0.27 2.42 16 36 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 37 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 38 H 0.09 1.68 7.60 -51.93 -0.39 1.29 16 LS Contribution 313.38 15.07 4.72 4.72 Total: -1.00 -27.58 313.38 -8.32 -35.89 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: -6.31 Total: 7.09 kcal Atomic # 6 Polarization: -3.07 SS G_CDS: -1.29 Total: -4.36 kcal Atomic # 7 Polarization: -46.32 SS G_CDS: -0.48 Total: -46.79 kcal Atomic # 8 Polarization: -12.18 SS G_CDS: 0.07 Total: -12.11 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -27.58 -8.32 -35.89 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061297101.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.134 kcal (2) G-P(sol) polarization free energy of solvation -27.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds