Wall clock time and date at job start Mon Mar 30 2020 03:56:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46904 * 109.46900 * 2 1 4 4 C 1.46907 * 110.99808 * 180.02562 * 3 2 1 5 5 C 1.52992 * 109.46999 * 180.02562 * 4 3 2 6 6 C 1.50709 * 109.47181 * 179.97438 * 5 4 3 7 7 O 1.21285 * 119.99706 * 2.77945 * 6 5 4 8 8 N 1.34768 * 120.00174 * 182.77871 * 6 5 4 9 9 C 1.46498 * 120.00138 * 5.94389 * 8 6 5 10 10 C 1.50704 * 109.47269 * 269.99964 * 9 8 6 11 11 H 1.08000 * 119.99933 * 359.97438 * 10 9 8 12 12 C 1.37878 * 119.99989 * 179.97438 * 10 9 8 13 13 N 1.31512 * 120.00201 * 359.97438 * 12 10 9 14 14 Si 1.86802 * 119.99873 * 179.97438 * 12 10 9 15 15 H 1.48496 * 109.46960 * 90.00069 * 14 12 10 16 16 H 1.48501 * 109.47034 * 210.00152 * 14 12 10 17 17 H 1.48504 * 109.46895 * 329.99716 * 14 12 10 18 18 C 1.46504 * 120.00238 * 185.94103 * 8 6 5 19 19 C 1.52999 * 117.49323 * 16.39642 * 18 8 6 20 20 C 1.52997 * 117.49780 * 307.73677 * 18 8 6 21 21 H 1.08997 * 109.47162 * 59.99534 * 1 2 3 22 22 H 1.09000 * 109.46791 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.46478 * 299.99814 * 1 2 3 24 24 H 1.08997 * 109.47163 * 240.00170 * 2 1 3 25 25 H 1.08995 * 109.47186 * 119.99687 * 2 1 3 26 26 H 1.00892 * 111.00129 * 56.05281 * 3 2 1 27 27 H 1.09002 * 109.47178 * 59.99511 * 4 3 2 28 28 H 1.09000 * 109.46868 * 300.00120 * 4 3 2 29 29 H 1.09002 * 109.47693 * 59.99657 * 5 4 3 30 30 H 1.09006 * 109.46942 * 299.99412 * 5 4 3 31 31 H 1.09005 * 109.47300 * 29.99591 * 9 8 6 32 32 H 1.09001 * 109.47811 * 149.99636 * 9 8 6 33 33 H 0.97004 * 120.00219 * 180.02562 * 13 12 10 34 34 H 1.08995 * 115.55158 * 162.06234 * 18 8 6 35 35 H 1.08997 * 117.50631 * 359.97438 * 19 18 8 36 36 H 1.08998 * 117.49581 * 145.02355 * 19 18 8 37 37 H 1.08993 * 117.50284 * 214.97569 * 20 18 8 38 38 H 1.08999 * 117.49993 * 359.97438 * 20 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4882 1.4242 -0.0006 5 6 3.9595 2.8798 0.0000 6 6 5.4660 2.9200 0.0001 7 8 6.1002 1.8875 -0.0514 8 7 6.1085 4.1033 0.0572 9 6 5.3487 5.3409 0.2503 10 6 4.9569 5.9044 -1.0914 11 1 5.2455 5.3922 -1.9973 12 6 4.2301 7.0739 -1.1622 13 7 3.8783 7.6974 -0.0590 14 14 3.7452 7.7729 -2.8253 15 1 2.4270 7.2209 -3.2288 16 1 3.6553 9.2523 -2.7333 17 1 4.7679 7.4010 -3.8358 18 6 7.5669 4.1521 -0.0738 19 6 8.2662 2.9182 -0.6475 20 6 8.3893 3.2444 0.8430 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3632 0.5138 0.8901 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 1.6443 1.9013 0.7814 27 1 3.8648 0.9203 -0.8908 28 1 3.8655 0.9201 0.8891 29 1 3.5829 3.3833 0.8904 30 1 3.5822 3.3842 -0.8896 31 1 4.4511 5.1292 0.8315 32 1 5.9640 6.0658 0.7832 33 1 3.3666 8.5200 -0.1089 34 1 7.9842 5.1280 -0.3219 35 1 7.6414 2.0699 -0.9271 36 1 9.1439 3.0823 -1.2726 37 1 9.3478 3.6229 1.1978 38 1 7.8453 2.6112 1.5439 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000061297101.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:56:04 Heat of formation + Delta-G solvation = -27.328225 kcal Electronic energy + Delta-G solvation = -17540.191703 eV Core-core repulsion = 14803.785404 eV Total energy + Delta-G solvation = -2736.406299 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.24705 -37.97763 -37.06012 -35.97358 -34.12332 -32.88834 -29.43512 -28.92814 -25.05806 -24.58172 -23.23754 -22.97843 -22.54203 -19.84454 -18.64823 -17.85266 -17.24075 -17.05230 -16.38816 -16.09148 -15.88556 -15.04614 -14.95075 -14.69102 -14.35633 -14.18861 -13.81712 -13.49994 -13.00846 -12.96199 -12.73865 -12.66796 -12.40720 -12.31537 -12.23533 -12.09117 -12.01825 -11.85555 -11.43976 -11.19762 -10.61997 -10.28241 -9.41733 -9.20451 -8.19286 -6.34182 1.42897 1.44819 1.53574 1.67514 2.19098 2.43410 3.08574 3.10577 3.20345 3.82701 3.97847 4.04801 4.12910 4.21560 4.25083 4.33670 4.40278 4.61204 4.63815 4.74539 4.83174 4.89807 4.97227 5.00458 5.08833 5.12234 5.12992 5.20601 5.34663 5.42397 5.68881 5.95606 6.03072 6.04971 6.43826 6.56271 6.81407 7.30164 7.41055 8.85784 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.013501 B = 0.008368 C = 0.005603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2073.493115 B = 3345.118943 C = 4996.065665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.052 3.948 3 N -0.700 5.700 4 C 0.092 3.908 5 C -0.124 4.124 6 C 0.512 3.488 7 O -0.579 6.579 8 N -0.573 5.573 9 C 0.255 3.745 10 C -0.544 4.544 11 H 0.052 0.948 12 C 0.024 3.976 13 N -0.920 5.920 14 Si 0.955 3.045 15 H -0.273 1.273 16 H -0.280 1.280 17 H -0.272 1.272 18 C 0.058 3.942 19 C -0.192 4.192 20 C -0.175 4.175 21 H 0.056 0.944 22 H 0.075 0.925 23 H 0.057 0.943 24 H 0.067 0.933 25 H 0.032 0.968 26 H 0.346 0.654 27 H 0.065 0.935 28 H 0.031 0.969 29 H 0.091 0.909 30 H 0.094 0.906 31 H 0.033 0.967 32 H 0.021 0.979 33 H 0.268 0.732 34 H 0.128 0.872 35 H 0.113 0.887 36 H 0.106 0.894 37 H 0.118 0.882 38 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.242 -9.829 1.342 9.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.077 4.077 3 N -0.332 5.332 4 C -0.037 4.037 5 C -0.164 4.164 6 C 0.302 3.698 7 O -0.462 6.462 8 N -0.301 5.301 9 C 0.134 3.866 10 C -0.583 4.583 11 H 0.070 0.930 12 C -0.177 4.177 13 N -0.559 5.559 14 Si 0.781 3.219 15 H -0.199 1.199 16 H -0.206 1.206 17 H -0.197 1.197 18 C -0.047 4.047 19 C -0.229 4.229 20 C -0.213 4.213 21 H 0.075 0.925 22 H 0.094 0.906 23 H 0.076 0.924 24 H 0.086 0.914 25 H 0.051 0.949 26 H 0.164 0.836 27 H 0.084 0.916 28 H 0.049 0.951 29 H 0.109 0.891 30 H 0.112 0.888 31 H 0.051 0.949 32 H 0.039 0.961 33 H 0.077 0.923 34 H 0.145 0.855 35 H 0.130 0.870 36 H 0.125 0.875 37 H 0.136 0.864 38 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -1.083 -10.094 0.711 10.177 hybrid contribution -0.064 0.613 0.191 0.645 sum -1.147 -9.481 0.902 9.593 Atomic orbital electron populations 1.21735 0.93529 1.02596 1.02334 1.21979 0.96743 0.88400 1.00547 1.60448 1.07175 1.14897 1.50667 1.21429 0.87531 0.94119 1.00660 1.21479 0.91049 0.98796 1.05041 1.20845 0.91049 0.82574 0.75321 1.90438 1.68709 1.33914 1.53162 1.47646 1.05949 1.07847 1.68673 1.19106 0.90915 0.80419 0.96155 1.21632 1.35083 1.08466 0.93077 0.93021 1.25616 0.95414 0.96746 0.99904 1.70001 1.38669 1.18525 1.28686 0.85590 0.78766 0.77523 0.80028 1.19900 1.20585 1.19722 1.21790 0.79792 0.96816 1.06271 1.23703 1.02347 1.00254 0.96608 1.23193 1.01599 1.03018 0.93520 0.92526 0.90570 0.92374 0.91412 0.94937 0.83601 0.91632 0.95128 0.89112 0.88781 0.94913 0.96087 0.92279 0.85479 0.86953 0.87547 0.86368 0.90557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.63 10.17 71.98 0.73 -1.90 16 2 C 0.05 1.17 6.41 86.30 0.55 1.72 16 3 N -0.70 -19.29 6.50 -513.88 -3.34 -22.63 16 4 C 0.09 2.94 4.98 86.30 0.43 3.36 16 5 C -0.12 -4.56 4.74 29.85 0.14 -4.41 16 6 C 0.51 21.20 7.46 87.66 0.65 21.85 16 7 O -0.58 -24.65 11.73 -3.05 -0.04 -24.69 16 8 N -0.57 -24.58 2.82 -802.13 -2.26 -26.85 16 9 C 0.25 12.24 4.96 85.63 0.43 12.66 16 10 C -0.54 -28.31 9.28 25.60 0.24 -28.08 16 11 H 0.05 2.75 7.81 -2.91 -0.02 2.73 16 12 C 0.02 1.24 5.46 84.66 0.46 1.70 16 13 N -0.92 -50.42 13.29 21.45 0.28 -50.13 16 14 Si 0.96 41.90 29.54 68.60 2.03 43.93 16 15 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 16 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 17 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 18 C 0.06 2.21 6.60 44.99 0.30 2.50 16 19 C -0.19 -6.59 9.63 30.62 0.29 -6.30 16 20 C -0.17 -5.71 9.88 30.62 0.30 -5.41 16 21 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 22 H 0.08 1.10 8.14 -2.39 -0.02 1.09 16 23 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 24 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 25 H 0.03 0.69 8.14 -2.39 -0.02 0.67 16 26 H 0.35 8.81 8.73 -89.70 -0.78 8.02 16 27 H 0.07 2.22 8.07 -2.39 -0.02 2.20 16 28 H 0.03 0.97 8.12 -2.39 -0.02 0.95 16 29 H 0.09 3.26 7.08 -2.39 -0.02 3.24 16 30 H 0.09 3.82 8.04 -2.38 -0.02 3.80 16 31 H 0.03 1.62 6.41 -2.38 -0.02 1.60 16 32 H 0.02 1.07 8.07 -2.39 -0.02 1.05 16 33 H 0.27 13.93 8.31 -92.71 -0.77 13.16 16 34 H 0.13 4.69 8.14 -2.39 -0.02 4.67 16 35 H 0.11 4.44 5.22 -5.34 -0.03 4.42 16 36 H 0.11 3.06 8.14 -2.39 -0.02 3.04 16 37 H 0.12 3.11 8.14 -2.39 -0.02 3.09 16 38 H 0.08 2.74 7.60 -2.39 -0.02 2.72 16 Total: -1.00 -57.51 313.38 1.43 -56.07 By element: Atomic # 1 Polarization: 26.35 SS G_CDS: 0.23 Total: 26.58 kcal Atomic # 6 Polarization: -6.82 SS G_CDS: 4.53 Total: -2.29 kcal Atomic # 7 Polarization: -94.29 SS G_CDS: -5.32 Total: -99.61 kcal Atomic # 8 Polarization: -24.65 SS G_CDS: -0.04 Total: -24.69 kcal Atomic # 14 Polarization: 41.90 SS G_CDS: 2.03 Total: 43.93 kcal Total: -57.51 1.43 -56.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061297101.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.745 kcal (2) G-P(sol) polarization free energy of solvation -57.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds