Wall clock time and date at job start Mon Mar 30 2020 03:14:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.46858 * 2 1 4 4 C 1.50701 * 109.46770 * 119.99567 * 2 1 3 5 5 H 1.08001 * 119.99922 * 120.00396 * 4 2 1 6 6 C 1.37886 * 119.99990 * 299.99678 * 4 2 1 7 7 N 1.31506 * 119.99872 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 119.99707 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46945 * 90.00383 * 8 6 4 10 10 H 1.48503 * 109.47240 * 209.99980 * 8 6 4 11 11 H 1.48504 * 109.47510 * 330.00670 * 8 6 4 12 12 N 1.46894 * 109.47093 * 239.99467 * 2 1 3 13 13 C 1.46905 * 110.99806 * 183.95277 * 12 2 1 14 14 C 1.46901 * 110.99825 * 60.00446 * 12 2 1 15 15 H 1.09005 * 109.63127 * 300.25058 * 14 12 2 16 16 C 1.53062 * 109.62935 * 179.85685 * 14 12 2 17 17 C 1.51798 * 110.74353 * 155.38246 * 16 14 12 18 18 C 1.51771 * 113.81143 * 66.80559 * 17 16 14 19 19 C 1.52994 * 110.88444 * 292.99942 * 18 17 16 20 20 N 1.47186 * 108.66225 * 86.46570 * 19 18 17 21 21 C 1.33373 * 120.43152 * 288.03886 * 20 19 18 22 22 O 1.21283 * 119.89391 * 180.28648 * 21 20 19 23 23 H 1.08997 * 109.47170 * 60.00214 * 1 2 3 24 24 H 1.08994 * 109.47357 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47170 * 300.00702 * 1 2 3 26 26 H 0.97001 * 119.99958 * 179.97438 * 7 6 4 27 27 H 1.09002 * 109.46949 * 67.82056 * 13 12 2 28 28 H 1.08998 * 109.46906 * 187.81434 * 13 12 2 29 29 H 1.08996 * 109.47349 * 307.82021 * 13 12 2 30 30 H 1.09005 * 109.22507 * 275.70355 * 16 14 12 31 31 H 1.09000 * 109.22739 * 35.09942 * 16 14 12 32 32 H 1.08997 * 108.61730 * 187.92656 * 17 16 14 33 33 H 1.09005 * 108.61305 * 305.82816 * 17 16 14 34 34 H 1.08997 * 109.19858 * 53.35899 * 18 17 16 35 35 H 1.09004 * 109.19722 * 172.68830 * 18 17 16 36 36 H 1.08997 * 109.60434 * 206.22327 * 19 18 17 37 37 H 1.09003 * 109.60110 * 326.71065 * 19 18 17 38 38 H 0.97005 * 119.78609 * 108.05013 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5884 1.1315 6 6 1.6992 -0.2391 2.4828 7 7 0.9428 0.8299 2.6034 8 14 2.3212 -1.1200 4.0081 9 1 3.6295 -0.5456 4.4125 10 1 1.3429 -0.9488 5.1122 11 1 2.4857 -2.5660 3.7122 12 7 2.0197 -0.6926 -1.1993 13 6 3.4851 -0.7946 -1.1869 14 6 1.5487 -0.0265 -2.4210 15 1 0.4588 -0.0212 -2.4383 16 6 2.0789 -0.7702 -3.6492 17 6 1.1843 -0.5289 -4.8516 18 6 1.1979 0.9055 -5.3474 19 6 0.5629 1.8439 -4.3194 20 7 1.5974 2.2590 -3.3583 21 6 2.0692 1.3950 -2.4584 22 8 2.9179 1.7489 -1.6676 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 0.7081 1.1612 3.4843 27 1 3.7957 -1.4673 -0.3874 28 1 3.8303 -1.1845 -2.1444 29 1 3.9166 0.1922 -1.0195 30 1 3.0858 -0.4186 -3.8748 31 1 2.1114 -1.8386 -3.4356 32 1 1.5085 -1.1806 -5.6629 33 1 0.1614 -0.7923 -4.5825 34 1 2.2282 1.2134 -5.5253 35 1 0.6391 0.9672 -6.2813 36 1 0.1601 2.7215 -4.8251 37 1 -0.2370 1.3227 -3.7935 38 1 1.9382 3.1670 -3.3793 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062797035.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:35 Heat of formation + Delta-G solvation = -26.975854 kcal Electronic energy + Delta-G solvation = -18774.407441 eV Core-core repulsion = 16038.016422 eV Total energy + Delta-G solvation = -2736.391019 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.23763 -36.52942 -36.20140 -33.41722 -32.26587 -30.11555 -28.79331 -26.50710 -24.64943 -24.13844 -23.01265 -20.66676 -20.13967 -18.25876 -16.95800 -16.72046 -15.96900 -15.05726 -14.85613 -14.11791 -14.02241 -13.75413 -13.60615 -13.21990 -13.05417 -12.24952 -12.11496 -11.80777 -11.45982 -11.12528 -11.04027 -10.91885 -10.82501 -10.64643 -10.51922 -10.31546 -9.96711 -9.90078 -9.64085 -9.55059 -8.86967 -8.62272 -8.29133 -6.92919 -5.88243 -3.90696 3.19989 3.38757 3.44242 3.48343 3.63898 4.50362 4.69874 4.82372 4.85167 4.94388 5.27496 5.40388 5.43941 5.50026 5.56952 5.69715 5.78162 5.94603 6.04045 6.11417 6.28488 6.36124 6.43176 6.80090 6.85823 7.07576 7.14150 7.16745 7.27956 7.60736 7.65749 7.88124 7.95740 8.29008 8.43677 8.65700 8.83556 9.15185 9.72173 11.19259 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.040290 B = 0.007144 C = 0.006865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.799010 B = 3918.500887 C = 4077.549534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.198 3.802 3 H 0.028 0.972 4 C -0.496 4.496 5 H 0.061 0.939 6 C 0.057 3.943 7 N -0.895 5.895 8 Si 0.895 3.105 9 H -0.282 1.282 10 H -0.288 1.288 11 H -0.274 1.274 12 N -0.510 5.510 13 C 0.022 3.978 14 C 0.068 3.932 15 H 0.101 0.899 16 C -0.107 4.107 17 C -0.120 4.120 18 C -0.140 4.140 19 C 0.109 3.891 20 N -0.734 5.734 21 C 0.487 3.513 22 O -0.528 6.528 23 H 0.000 1.000 24 H 0.033 0.967 25 H 0.085 0.915 26 H 0.258 0.742 27 H 0.065 0.935 28 H 0.036 0.964 29 H 0.052 0.948 30 H 0.058 0.942 31 H 0.084 0.916 32 H 0.062 0.938 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.071 0.929 36 H 0.080 0.920 37 H 0.075 0.925 38 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.676 0.288 -16.143 16.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.093 3.907 3 H 0.046 0.954 4 C -0.535 4.535 5 H 0.079 0.921 6 C -0.144 4.144 7 N -0.535 5.535 8 Si 0.724 3.276 9 H -0.209 1.209 10 H -0.214 1.214 11 H -0.199 1.199 12 N -0.233 5.233 13 C -0.126 4.126 14 C -0.046 4.046 15 H 0.118 0.882 16 C -0.145 4.145 17 C -0.158 4.158 18 C -0.178 4.178 19 C -0.016 4.016 20 N -0.389 5.389 21 C 0.273 3.727 22 O -0.404 6.404 23 H 0.019 0.981 24 H 0.052 0.948 25 H 0.103 0.897 26 H 0.068 0.932 27 H 0.084 0.916 28 H 0.055 0.945 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.103 0.897 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.090 0.910 36 H 0.099 0.901 37 H 0.094 0.906 38 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -1.568 -0.135 -15.520 15.599 hybrid contribution 0.618 0.859 0.781 1.315 sum -0.950 0.724 -14.739 14.787 Atomic orbital electron populations 1.21869 0.98379 0.99326 0.99523 1.19497 0.91615 0.94127 0.85510 0.95443 1.21134 1.30567 1.11966 0.89828 0.92070 1.24912 0.95403 0.95141 0.98913 1.69897 1.37271 1.23187 1.23113 0.86542 0.78436 0.80006 0.82662 1.20873 1.21380 1.19920 1.62716 1.10347 1.48964 1.01242 1.22419 0.88727 1.02010 0.99460 1.22156 1.01116 0.87637 0.93659 0.88182 1.21360 0.98710 1.01769 0.92672 1.21156 1.00780 0.96071 0.97787 1.21835 1.01876 0.95700 0.98429 1.21702 0.90609 0.98878 0.90394 1.46257 1.42416 1.14797 1.35381 1.22395 0.81691 0.89495 0.79153 1.90711 1.32165 1.78910 1.38605 0.98104 0.94784 0.89656 0.93202 0.91617 0.94482 0.92949 0.92368 0.89704 0.91882 0.91666 0.91463 0.91001 0.90105 0.90642 0.77524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.37 8.74 37.16 0.32 -3.04 16 2 C 0.20 5.31 1.69 -68.87 -0.12 5.20 16 3 H 0.03 0.85 5.84 -51.93 -0.30 0.55 16 4 C -0.50 -14.38 8.00 -34.44 -0.28 -14.66 16 5 H 0.06 1.76 6.43 -52.49 -0.34 1.42 16 6 C 0.06 1.65 5.30 -17.82 -0.09 1.55 16 7 N -0.89 -26.85 11.32 55.43 0.63 -26.22 16 8 Si 0.90 22.32 29.54 -169.99 -5.02 17.30 16 9 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 10 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 11 H -0.27 -6.72 7.11 56.52 0.40 -6.31 16 12 N -0.51 -11.54 4.62 -229.21 -1.06 -12.60 16 13 C 0.02 0.48 8.42 60.07 0.51 0.99 16 14 C 0.07 1.24 1.62 -68.48 -0.11 1.13 16 15 H 0.10 1.80 4.94 -51.93 -0.26 1.54 16 16 C -0.11 -1.53 3.83 -27.31 -0.10 -1.63 16 17 C -0.12 -1.26 5.28 -27.96 -0.15 -1.41 16 18 C -0.14 -1.29 5.73 -27.36 -0.16 -1.45 16 19 C 0.11 1.13 6.47 -3.67 -0.02 1.10 16 20 N -0.73 -10.55 5.27 -59.90 -0.32 -10.87 16 21 C 0.49 9.36 6.25 -11.25 -0.07 9.29 16 22 O -0.53 -12.67 12.68 5.55 0.07 -12.60 16 23 H 0.00 0.00 6.40 -51.93 -0.33 -0.33 16 24 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 25 H 0.08 2.38 6.07 -51.93 -0.32 2.07 16 26 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 27 H 0.07 1.50 6.55 -51.93 -0.34 1.16 16 28 H 0.04 0.69 6.18 -51.93 -0.32 0.36 16 29 H 0.05 1.28 5.63 -51.93 -0.29 0.99 16 30 H 0.06 0.86 7.26 -51.93 -0.38 0.48 16 31 H 0.08 1.23 8.03 -51.93 -0.42 0.81 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.66 7.87 -51.93 -0.41 0.25 16 34 H 0.07 0.68 8.05 -51.93 -0.42 0.26 16 35 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.08 0.82 6.71 -51.93 -0.35 0.47 16 38 H 0.39 5.16 8.91 -40.82 -0.36 4.79 16 LS Contribution 281.83 15.07 4.25 4.25 Total: -1.00 -33.23 281.83 -7.38 -40.61 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -5.66 Total: 3.06 kcal Atomic # 6 Polarization: -2.66 SS G_CDS: -0.27 Total: -2.93 kcal Atomic # 7 Polarization: -48.94 SS G_CDS: -0.75 Total: -49.69 kcal Atomic # 8 Polarization: -12.67 SS G_CDS: 0.07 Total: -12.60 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -33.23 -7.38 -40.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062797035.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.632 kcal (2) G-P(sol) polarization free energy of solvation -33.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds