Wall clock time and date at job start Mon Mar 30 2020 03:14:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.46858 * 2 1 4 4 C 1.50701 * 109.46770 * 119.99567 * 2 1 3 5 5 H 1.08001 * 119.99922 * 120.00396 * 4 2 1 6 6 C 1.37886 * 119.99990 * 299.99678 * 4 2 1 7 7 N 1.31506 * 119.99872 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 119.99707 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46945 * 90.00383 * 8 6 4 10 10 H 1.48503 * 109.47240 * 209.99980 * 8 6 4 11 11 H 1.48504 * 109.47510 * 330.00670 * 8 6 4 12 12 N 1.46894 * 109.47093 * 239.99467 * 2 1 3 13 13 C 1.46905 * 110.99806 * 183.95277 * 12 2 1 14 14 C 1.46901 * 110.99825 * 60.00446 * 12 2 1 15 15 H 1.09005 * 109.63127 * 300.25058 * 14 12 2 16 16 C 1.53062 * 109.62935 * 179.85685 * 14 12 2 17 17 C 1.51798 * 110.74353 * 155.38246 * 16 14 12 18 18 C 1.51771 * 113.81143 * 66.80559 * 17 16 14 19 19 C 1.52994 * 110.88444 * 292.99942 * 18 17 16 20 20 N 1.47186 * 108.66225 * 86.46570 * 19 18 17 21 21 C 1.33373 * 120.43152 * 288.03886 * 20 19 18 22 22 O 1.21283 * 119.89391 * 180.28648 * 21 20 19 23 23 H 1.08997 * 109.47170 * 60.00214 * 1 2 3 24 24 H 1.08994 * 109.47357 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47170 * 300.00702 * 1 2 3 26 26 H 0.97001 * 119.99958 * 179.97438 * 7 6 4 27 27 H 1.09002 * 109.46949 * 67.82056 * 13 12 2 28 28 H 1.08998 * 109.46906 * 187.81434 * 13 12 2 29 29 H 1.08996 * 109.47349 * 307.82021 * 13 12 2 30 30 H 1.09005 * 109.22507 * 275.70355 * 16 14 12 31 31 H 1.09000 * 109.22739 * 35.09942 * 16 14 12 32 32 H 1.08997 * 108.61730 * 187.92656 * 17 16 14 33 33 H 1.09005 * 108.61305 * 305.82816 * 17 16 14 34 34 H 1.08997 * 109.19858 * 53.35899 * 18 17 16 35 35 H 1.09004 * 109.19722 * 172.68830 * 18 17 16 36 36 H 1.08997 * 109.60434 * 206.22327 * 19 18 17 37 37 H 1.09003 * 109.60110 * 326.71065 * 19 18 17 38 38 H 0.97005 * 119.78609 * 108.05013 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5884 1.1315 6 6 1.6992 -0.2391 2.4828 7 7 0.9428 0.8299 2.6034 8 14 2.3212 -1.1200 4.0081 9 1 3.6295 -0.5456 4.4125 10 1 1.3429 -0.9488 5.1122 11 1 2.4857 -2.5660 3.7122 12 7 2.0197 -0.6926 -1.1993 13 6 3.4851 -0.7946 -1.1869 14 6 1.5487 -0.0265 -2.4210 15 1 0.4588 -0.0212 -2.4383 16 6 2.0789 -0.7702 -3.6492 17 6 1.1843 -0.5289 -4.8516 18 6 1.1979 0.9055 -5.3474 19 6 0.5629 1.8439 -4.3194 20 7 1.5974 2.2590 -3.3583 21 6 2.0692 1.3950 -2.4584 22 8 2.9179 1.7489 -1.6676 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 0.7081 1.1612 3.4843 27 1 3.7957 -1.4673 -0.3874 28 1 3.8303 -1.1845 -2.1444 29 1 3.9166 0.1922 -1.0195 30 1 3.0858 -0.4186 -3.8748 31 1 2.1114 -1.8386 -3.4356 32 1 1.5085 -1.1806 -5.6629 33 1 0.1614 -0.7923 -4.5825 34 1 2.2282 1.2134 -5.5253 35 1 0.6391 0.9672 -6.2813 36 1 0.1601 2.7215 -4.8251 37 1 -0.2370 1.3227 -3.7935 38 1 1.9382 3.1670 -3.3793 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062797035.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:34 Heat of formation + Delta-G solvation = -52.653313 kcal Electronic energy + Delta-G solvation = -18775.520899 eV Core-core repulsion = 16038.016422 eV Total energy + Delta-G solvation = -2737.504477 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.67088 -37.99531 -37.65259 -35.14250 -33.84215 -31.65189 -30.55559 -28.04283 -26.58753 -25.49190 -24.50275 -22.18521 -21.43076 -19.74750 -18.59312 -18.08167 -17.74920 -16.96832 -16.15714 -15.82863 -15.45205 -15.15416 -14.90075 -14.79139 -14.25560 -13.91684 -13.66593 -13.37580 -12.97627 -12.90535 -12.70851 -12.68147 -12.27471 -12.22492 -12.03183 -11.81736 -11.66488 -11.51957 -11.27605 -11.16014 -10.82421 -10.50575 -9.96760 -8.77332 -8.09290 -6.19722 1.39591 1.40939 1.51836 1.73693 2.42370 2.46106 3.18635 3.33376 3.65379 3.93583 3.96823 4.14164 4.32306 4.43893 4.47461 4.61669 4.73891 4.84832 4.87914 4.95397 5.04802 5.10638 5.18180 5.19741 5.23380 5.26898 5.33926 5.49680 5.56210 5.73426 5.84107 6.00814 6.26609 6.32275 6.36414 6.73093 6.94539 7.39226 7.47728 8.97397 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.040290 B = 0.007144 C = 0.006865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.799010 B = 3918.500887 C = 4077.549534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.205 3.795 3 H -0.017 1.017 4 C -0.517 4.517 5 H 0.056 0.944 6 C 0.006 3.994 7 N -0.923 5.923 8 Si 0.961 3.039 9 H -0.281 1.281 10 H -0.280 1.280 11 H -0.265 1.265 12 N -0.514 5.514 13 C 0.032 3.968 14 C 0.065 3.935 15 H 0.106 0.894 16 C -0.100 4.100 17 C -0.118 4.118 18 C -0.134 4.134 19 C 0.099 3.901 20 N -0.721 5.721 21 C 0.480 3.520 22 O -0.588 6.588 23 H 0.025 0.975 24 H 0.036 0.964 25 H 0.056 0.944 26 H 0.260 0.740 27 H 0.049 0.951 28 H 0.071 0.929 29 H 0.023 0.977 30 H 0.051 0.949 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.074 0.926 34 H 0.060 0.940 35 H 0.108 0.892 36 H 0.117 0.883 37 H 0.073 0.927 38 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.535 -0.502 -18.331 18.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.099 3.901 3 H 0.001 0.999 4 C -0.556 4.556 5 H 0.074 0.926 6 C -0.192 4.192 7 N -0.564 5.564 8 Si 0.787 3.213 9 H -0.207 1.207 10 H -0.205 1.205 11 H -0.190 1.190 12 N -0.237 5.237 13 C -0.116 4.116 14 C -0.048 4.048 15 H 0.124 0.876 16 C -0.138 4.138 17 C -0.155 4.155 18 C -0.173 4.173 19 C -0.024 4.024 20 N -0.373 5.373 21 C 0.266 3.734 22 O -0.469 6.469 23 H 0.044 0.956 24 H 0.055 0.945 25 H 0.075 0.925 26 H 0.069 0.931 27 H 0.068 0.932 28 H 0.089 0.911 29 H 0.042 0.958 30 H 0.070 0.930 31 H 0.102 0.898 32 H 0.105 0.895 33 H 0.092 0.908 34 H 0.078 0.922 35 H 0.126 0.874 36 H 0.135 0.865 37 H 0.091 0.909 38 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -2.463 -0.921 -17.778 17.972 hybrid contribution 0.859 1.163 1.348 1.977 sum -1.604 0.242 -16.430 16.510 Atomic orbital electron populations 1.21650 0.97444 0.99288 0.99346 1.19195 0.92230 0.91803 0.86920 0.99943 1.21468 1.30760 1.12046 0.91308 0.92586 1.25750 0.95559 0.95878 1.02006 1.70040 1.38143 1.24395 1.23796 0.85508 0.77832 0.79147 0.78844 1.20713 1.20502 1.18952 1.62607 1.10404 1.49130 1.01550 1.22291 0.88599 1.00085 1.00665 1.22311 1.01311 0.87799 0.93367 0.87613 1.21350 0.99179 1.00899 0.92361 1.21166 1.00257 0.97598 0.96520 1.21817 1.01945 0.94229 0.99272 1.22127 0.89405 1.00979 0.89894 1.46220 1.42157 1.14364 1.34584 1.22448 0.81295 0.90373 0.79297 1.90697 1.35007 1.79888 1.41265 0.95592 0.94498 0.92472 0.93142 0.93201 0.91075 0.95836 0.93038 0.89772 0.89508 0.90769 0.92166 0.87381 0.86488 0.90861 0.76824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.12 8.74 71.98 0.63 -5.49 16 2 C 0.21 11.35 1.69 44.17 0.07 11.43 16 3 H -0.02 -1.09 5.84 -2.39 -0.01 -1.10 16 4 C -0.52 -30.81 8.00 25.60 0.20 -30.60 16 5 H 0.06 3.31 6.43 -2.91 -0.02 3.29 16 6 C 0.01 0.34 5.30 84.66 0.45 0.79 16 7 N -0.92 -56.87 11.32 21.45 0.24 -56.63 16 8 Si 0.96 46.51 29.54 68.60 2.03 48.53 16 9 H -0.28 -13.45 7.11 99.48 0.71 -12.74 16 10 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 11 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 12 N -0.51 -23.58 4.62 -879.10 -4.06 -27.64 16 13 C 0.03 1.43 8.42 127.69 1.08 2.51 16 14 C 0.06 2.33 1.62 44.42 0.07 2.41 16 15 H 0.11 3.64 4.94 -2.38 -0.01 3.63 16 16 C -0.10 -2.64 3.83 30.22 0.12 -2.52 16 17 C -0.12 -2.01 5.28 29.79 0.16 -1.85 16 18 C -0.13 -1.91 5.73 30.19 0.17 -1.74 16 19 C 0.10 1.70 6.47 86.25 0.56 2.26 16 20 N -0.72 -19.79 5.27 -462.60 -2.44 -22.22 16 21 C 0.48 18.53 6.25 88.10 0.55 19.08 16 22 O -0.59 -29.48 12.68 -3.04 -0.04 -29.51 16 23 H 0.03 1.14 6.40 -2.39 -0.02 1.13 16 24 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 25 H 0.06 3.26 6.07 -2.39 -0.01 3.25 16 26 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 27 H 0.05 2.34 6.55 -2.39 -0.02 2.32 16 28 H 0.07 2.64 6.18 -2.39 -0.01 2.62 16 29 H 0.02 1.20 5.63 -2.39 -0.01 1.18 16 30 H 0.05 1.43 7.26 -2.38 -0.02 1.41 16 31 H 0.08 2.25 8.03 -2.39 -0.02 2.23 16 32 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.07 1.18 7.87 -2.38 -0.02 1.17 16 34 H 0.06 0.99 8.05 -2.39 -0.02 0.97 16 35 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.12 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.07 1.35 6.71 -2.39 -0.02 1.33 16 38 H 0.40 10.10 8.91 -92.70 -0.83 9.28 16 Total: -1.00 -75.90 281.83 0.03 -75.87 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: 0.24 Total: 15.34 kcal Atomic # 6 Polarization: -7.79 SS G_CDS: 4.06 Total: -3.74 kcal Atomic # 7 Polarization: -100.24 SS G_CDS: -6.26 Total: -106.49 kcal Atomic # 8 Polarization: -29.48 SS G_CDS: -0.04 Total: -29.51 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 2.03 Total: 48.53 kcal Total: -75.90 0.03 -75.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062797035.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.217 kcal (2) G-P(sol) polarization free energy of solvation -75.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds