Wall clock time and date at job start Mon Mar 30 2020 03:19:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.47449 * 2 1 4 4 C 1.50703 * 109.47068 * 240.00458 * 2 1 3 5 5 H 1.08000 * 119.99471 * 239.99895 * 4 2 1 6 6 C 1.37872 * 120.00278 * 59.99483 * 4 2 1 7 7 N 1.31522 * 119.99822 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 120.00140 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.46927 * 90.00395 * 8 6 4 10 10 H 1.48498 * 109.47074 * 210.00411 * 8 6 4 11 11 H 1.48498 * 109.47169 * 330.00005 * 8 6 4 12 12 N 1.46501 * 109.47328 * 120.00526 * 2 1 3 13 13 C 1.34780 * 119.99342 * 274.99884 * 12 2 1 14 14 O 1.21276 * 120.00419 * 359.97438 * 13 12 2 15 15 C 1.50703 * 119.99493 * 179.97438 * 13 12 2 16 16 C 1.52993 * 109.57550 * 59.84094 * 15 13 12 17 17 C 1.53120 * 109.52358 * 180.02562 * 15 13 12 18 18 C 1.53042 * 109.27821 * 62.24663 * 17 15 13 19 19 N 1.46848 * 109.52160 * 59.18425 * 18 17 15 20 20 C 1.46847 * 111.19556 * 298.25623 * 19 18 17 21 21 C 1.53034 * 109.52616 * 61.74332 * 20 19 18 22 22 H 1.09005 * 109.47401 * 59.99899 * 1 2 3 23 23 H 1.09001 * 109.47449 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47190 * 299.99386 * 1 2 3 25 25 H 0.97004 * 119.99474 * 179.97438 * 7 6 4 26 26 H 0.96993 * 120.00332 * 94.99378 * 12 2 1 27 27 H 1.09008 * 109.47194 * 180.16027 * 16 15 13 28 28 H 1.09000 * 109.47096 * 300.15447 * 16 15 13 29 29 H 1.09004 * 109.47496 * 60.15761 * 16 15 13 30 30 H 1.08997 * 109.49895 * 302.31116 * 17 15 13 31 31 H 1.08998 * 109.50437 * 182.19118 * 17 15 13 32 32 H 1.08995 * 109.46577 * 299.16647 * 18 17 15 33 33 H 1.08993 * 109.45168 * 179.18918 * 18 17 15 34 34 H 1.00901 * 111.00066 * 62.35005 * 19 18 17 35 35 H 1.09000 * 109.46087 * 181.75730 * 20 19 18 36 36 H 1.09004 * 109.46240 * 301.72671 * 20 19 18 37 37 H 1.08998 * 109.50577 * 180.88107 * 21 20 19 38 38 H 1.09000 * 109.50061 * 60.76065 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5884 -1.1314 6 6 1.6991 -0.2393 -2.4828 7 7 0.9433 0.8303 -2.6034 8 14 2.3212 -1.1202 -4.0080 9 1 1.3426 -2.1615 -4.4120 10 1 2.4864 -0.1412 -5.1123 11 1 3.6292 -1.7581 -3.7124 12 7 2.0183 -0.6907 1.1961 13 6 2.1471 -0.0183 2.3571 14 8 1.8591 1.1585 2.4115 15 6 2.6489 -0.7289 3.5876 16 6 4.0497 -1.2844 3.3234 17 6 2.7004 0.2537 4.7608 18 6 1.2869 0.7588 5.0593 19 7 0.4186 -0.3788 5.3882 20 6 0.3160 -1.3122 4.2593 21 6 1.7004 -1.8792 3.9369 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5137 0.8900 25 1 0.7093 1.1619 -3.4844 26 1 2.2490 -1.6318 1.1525 27 1 4.4099 -1.8004 4.2135 28 1 4.0116 -1.9839 2.4883 29 1 4.7258 -0.4646 3.0801 30 1 3.3409 1.0967 4.5014 31 1 3.1001 -0.2505 5.6406 32 1 0.8932 1.2750 4.1837 33 1 1.3183 1.4477 5.9033 34 1 0.7407 -0.8510 6.2197 35 1 -0.3581 -2.1275 4.5223 36 1 -0.0732 -0.7863 3.3874 37 1 1.6264 -2.5600 3.0889 38 1 2.0842 -2.4170 4.8038 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062841435.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:21 Heat of formation + Delta-G solvation = -55.501467 kcal Electronic energy + Delta-G solvation = -18468.650728 eV Core-core repulsion = 15731.022746 eV Total energy + Delta-G solvation = -2737.627982 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.30816 -37.21077 -34.76711 -33.54797 -32.24015 -30.64644 -28.71701 -27.05830 -25.25872 -23.20268 -22.84714 -21.73370 -20.19266 -18.91840 -17.00100 -15.85946 -15.48416 -15.02738 -14.58327 -14.32998 -14.30695 -14.05423 -13.60285 -13.22376 -12.52259 -12.36850 -12.20831 -11.94526 -11.71483 -11.61665 -11.32689 -11.10163 -11.07053 -10.92110 -10.82901 -10.64018 -10.31997 -10.23564 -10.13830 -9.04328 -8.78902 -8.53391 -8.23375 -7.87219 -6.12526 -4.21909 3.23391 3.30305 3.32278 3.41591 4.07025 4.36629 4.44714 4.74129 4.88296 5.03699 5.19719 5.25200 5.42825 5.48193 5.57235 5.67516 5.74804 5.87395 5.90443 5.94906 6.08200 6.20069 6.26717 6.28670 6.54286 6.83612 6.98071 7.16097 7.16385 7.47979 7.54958 7.57866 7.69925 7.92531 8.15858 8.69039 8.78838 9.15931 9.46079 10.93346 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.038234 B = 0.006494 C = 0.006202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.156157 B = 4310.681614 C = 4513.246920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.265 3.735 3 H 0.047 0.953 4 C -0.534 4.534 5 H 0.060 0.940 6 C 0.066 3.934 7 N -0.883 5.883 8 Si 0.901 3.099 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.706 5.706 13 C 0.514 3.486 14 O -0.551 6.551 15 C -0.084 4.084 16 C -0.138 4.138 17 C -0.126 4.126 18 C 0.044 3.956 19 N -0.684 5.684 20 C 0.054 3.946 21 C -0.142 4.142 22 H 0.089 0.911 23 H 0.025 0.975 24 H 0.014 0.986 25 H 0.264 0.736 26 H 0.386 0.614 27 H 0.059 0.941 28 H 0.062 0.938 29 H 0.060 0.940 30 H 0.073 0.927 31 H 0.058 0.942 32 H 0.103 0.897 33 H 0.067 0.933 34 H 0.331 0.669 35 H 0.073 0.927 36 H 0.078 0.922 37 H 0.072 0.928 38 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.755 -6.023 12.877 14.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.163 3.837 3 H 0.065 0.935 4 C -0.572 4.572 5 H 0.078 0.922 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.728 3.272 9 H -0.205 1.205 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.353 5.353 13 C 0.298 3.702 14 O -0.430 6.430 15 C -0.088 4.088 16 C -0.195 4.195 17 C -0.166 4.166 18 C -0.085 4.085 19 N -0.311 5.311 20 C -0.076 4.076 21 C -0.181 4.181 22 H 0.108 0.892 23 H 0.044 0.956 24 H 0.033 0.967 25 H 0.074 0.926 26 H 0.219 0.781 27 H 0.078 0.922 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.091 0.909 31 H 0.077 0.923 32 H 0.122 0.878 33 H 0.086 0.914 34 H 0.147 0.853 35 H 0.092 0.908 36 H 0.096 0.904 37 H 0.091 0.909 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 1.852 -4.697 12.562 13.538 hybrid contribution 1.420 -1.431 -0.942 2.225 sum 3.271 -6.128 11.620 13.538 Atomic orbital electron populations 1.22062 0.98479 0.99015 1.00846 1.18718 0.90979 0.93913 0.80085 0.93497 1.21220 1.32417 1.13168 0.90409 0.92198 1.24888 0.94833 0.94937 0.99037 1.69911 1.35907 1.22391 1.23851 0.86461 0.79146 0.79295 0.82274 1.20536 1.21056 1.19902 1.46519 1.64880 1.13398 1.10528 1.20177 0.78271 0.87274 0.84462 1.90583 1.51472 1.16156 1.84838 1.20888 0.96524 0.96388 0.94986 1.21815 0.94718 1.01186 1.01798 1.22027 0.99857 0.98778 0.95921 1.22319 0.90120 0.93153 1.02918 1.60668 1.53591 1.11135 1.05740 1.22050 0.95078 0.95512 0.94984 1.22300 0.96774 0.96898 1.02177 0.89227 0.95563 0.96692 0.92586 0.78142 0.92223 0.91929 0.92094 0.90872 0.92300 0.87842 0.91432 0.85254 0.90821 0.90360 0.90895 0.91476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.63 9.26 37.15 0.34 -3.29 16 2 C 0.26 6.73 2.56 -69.08 -0.18 6.56 16 3 H 0.05 1.39 7.58 -51.93 -0.39 0.99 16 4 C -0.53 -14.16 8.73 -34.44 -0.30 -14.46 16 5 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 6 C 0.07 1.79 5.30 -17.82 -0.09 1.69 16 7 N -0.88 -24.98 11.32 55.43 0.63 -24.36 16 8 Si 0.90 20.66 29.54 -169.99 -5.02 15.64 16 9 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 12 N -0.71 -14.58 4.85 -54.93 -0.27 -14.85 16 13 C 0.51 10.05 5.05 -10.98 -0.06 10.00 16 14 O -0.55 -12.84 13.46 5.56 0.07 -12.76 16 15 C -0.08 -1.22 0.63 -155.54 -0.10 -1.32 16 16 C -0.14 -1.74 8.38 37.15 0.31 -1.43 16 17 C -0.13 -1.73 4.51 -26.65 -0.12 -1.85 16 18 C 0.04 0.64 6.28 -3.83 -0.02 0.62 16 19 N -0.68 -9.08 6.87 -113.82 -0.78 -9.86 16 20 C 0.05 0.73 6.35 -3.84 -0.02 0.71 16 21 C -0.14 -1.77 4.79 -26.65 -0.13 -1.89 16 22 H 0.09 2.44 6.07 -51.93 -0.32 2.12 16 23 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 24 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 26 H 0.39 7.05 7.36 -40.82 -0.30 6.75 16 27 H 0.06 0.61 8.14 -51.92 -0.42 0.19 16 28 H 0.06 0.78 7.56 -51.93 -0.39 0.39 16 29 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.07 1.09 8.04 -51.93 -0.42 0.67 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.10 1.92 5.72 -51.93 -0.30 1.62 16 33 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 34 H 0.33 3.60 8.86 -39.29 -0.35 3.25 16 35 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.08 1.34 7.31 -51.93 -0.38 0.96 16 37 H 0.07 0.90 7.53 -51.93 -0.39 0.51 16 38 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 LS Contribution 296.41 15.07 4.47 4.47 Total: -1.00 -29.57 296.41 -7.42 -37.00 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: -6.16 Total: 9.39 kcal Atomic # 6 Polarization: -4.30 SS G_CDS: -0.37 Total: -4.67 kcal Atomic # 7 Polarization: -48.65 SS G_CDS: -0.42 Total: -49.07 kcal Atomic # 8 Polarization: -12.84 SS G_CDS: 0.07 Total: -12.76 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -29.57 -7.42 -37.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062841435.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.505 kcal (2) G-P(sol) polarization free energy of solvation -29.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds