Wall clock time and date at job start Mon Mar 30 2020 03:19:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.47449 * 2 1 4 4 C 1.50703 * 109.47068 * 240.00458 * 2 1 3 5 5 H 1.08000 * 119.99471 * 239.99895 * 4 2 1 6 6 C 1.37872 * 120.00278 * 59.99483 * 4 2 1 7 7 N 1.31522 * 119.99822 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 120.00140 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.46927 * 90.00395 * 8 6 4 10 10 H 1.48498 * 109.47074 * 210.00411 * 8 6 4 11 11 H 1.48498 * 109.47169 * 330.00005 * 8 6 4 12 12 N 1.46501 * 109.47328 * 120.00526 * 2 1 3 13 13 C 1.34780 * 119.99342 * 274.99884 * 12 2 1 14 14 O 1.21276 * 120.00419 * 359.97438 * 13 12 2 15 15 C 1.50703 * 119.99493 * 179.97438 * 13 12 2 16 16 C 1.52993 * 109.57550 * 59.84094 * 15 13 12 17 17 C 1.53120 * 109.52358 * 180.02562 * 15 13 12 18 18 C 1.53042 * 109.27821 * 62.24663 * 17 15 13 19 19 N 1.46848 * 109.52160 * 59.18425 * 18 17 15 20 20 C 1.46847 * 111.19556 * 298.25623 * 19 18 17 21 21 C 1.53034 * 109.52616 * 61.74332 * 20 19 18 22 22 H 1.09005 * 109.47401 * 59.99899 * 1 2 3 23 23 H 1.09001 * 109.47449 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47190 * 299.99386 * 1 2 3 25 25 H 0.97004 * 119.99474 * 179.97438 * 7 6 4 26 26 H 0.96993 * 120.00332 * 94.99378 * 12 2 1 27 27 H 1.09008 * 109.47194 * 180.16027 * 16 15 13 28 28 H 1.09000 * 109.47096 * 300.15447 * 16 15 13 29 29 H 1.09004 * 109.47496 * 60.15761 * 16 15 13 30 30 H 1.08997 * 109.49895 * 302.31116 * 17 15 13 31 31 H 1.08998 * 109.50437 * 182.19118 * 17 15 13 32 32 H 1.08995 * 109.46577 * 299.16647 * 18 17 15 33 33 H 1.08993 * 109.45168 * 179.18918 * 18 17 15 34 34 H 1.00901 * 111.00066 * 62.35005 * 19 18 17 35 35 H 1.09000 * 109.46087 * 181.75730 * 20 19 18 36 36 H 1.09004 * 109.46240 * 301.72671 * 20 19 18 37 37 H 1.08998 * 109.50577 * 180.88107 * 21 20 19 38 38 H 1.09000 * 109.50061 * 60.76065 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5884 -1.1314 6 6 1.6991 -0.2393 -2.4828 7 7 0.9433 0.8303 -2.6034 8 14 2.3212 -1.1202 -4.0080 9 1 1.3426 -2.1615 -4.4120 10 1 2.4864 -0.1412 -5.1123 11 1 3.6292 -1.7581 -3.7124 12 7 2.0183 -0.6907 1.1961 13 6 2.1471 -0.0183 2.3571 14 8 1.8591 1.1585 2.4115 15 6 2.6489 -0.7289 3.5876 16 6 4.0497 -1.2844 3.3234 17 6 2.7004 0.2537 4.7608 18 6 1.2869 0.7588 5.0593 19 7 0.4186 -0.3788 5.3882 20 6 0.3160 -1.3122 4.2593 21 6 1.7004 -1.8792 3.9369 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5137 0.8900 25 1 0.7093 1.1619 -3.4844 26 1 2.2490 -1.6318 1.1525 27 1 4.4099 -1.8004 4.2135 28 1 4.0116 -1.9839 2.4883 29 1 4.7258 -0.4646 3.0801 30 1 3.3409 1.0967 4.5014 31 1 3.1001 -0.2505 5.6406 32 1 0.8932 1.2750 4.1837 33 1 1.3183 1.4477 5.9033 34 1 0.7407 -0.8510 6.2197 35 1 -0.3581 -2.1275 4.5223 36 1 -0.0732 -0.7863 3.3874 37 1 1.6264 -2.5600 3.0889 38 1 2.0842 -2.4170 4.8038 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062841435.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:21 Heat of formation + Delta-G solvation = -77.582222 kcal Electronic energy + Delta-G solvation = -18469.608222 eV Core-core repulsion = 15731.022746 eV Total energy + Delta-G solvation = -2738.585476 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.67940 -38.65403 -36.65606 -34.87638 -34.02110 -31.80775 -30.60129 -28.09145 -27.36531 -24.69884 -23.93419 -23.02998 -21.92044 -20.54283 -18.62040 -17.51834 -17.18951 -16.59543 -15.92097 -15.77885 -15.53905 -15.27368 -14.99040 -14.64528 -14.43323 -13.91894 -13.37587 -13.28979 -13.15864 -12.97612 -12.86406 -12.75457 -12.70038 -12.42794 -12.29109 -12.16363 -12.07150 -11.96825 -11.24724 -11.11105 -10.65055 -10.32534 -9.70514 -9.28094 -8.19110 -6.37176 1.43180 1.44086 1.54663 1.87381 2.34450 2.63932 3.11093 3.41328 3.62350 3.70920 3.92610 4.15038 4.18878 4.43681 4.51425 4.64593 4.69268 4.71151 4.84062 4.88107 4.90676 4.94786 5.00906 5.08410 5.11914 5.18026 5.26223 5.33805 5.44537 5.61880 5.68440 5.90333 6.06250 6.09107 6.65054 6.71523 6.99816 7.31337 7.59946 8.87192 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.038234 B = 0.006494 C = 0.006202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.156157 B = 4310.681614 C = 4513.246920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.273 3.727 3 H -0.007 1.007 4 C -0.547 4.547 5 H 0.073 0.927 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.973 3.027 9 H -0.270 1.270 10 H -0.287 1.287 11 H -0.263 1.263 12 N -0.703 5.703 13 C 0.506 3.494 14 O -0.595 6.595 15 C -0.077 4.077 16 C -0.135 4.135 17 C -0.122 4.122 18 C 0.047 3.953 19 N -0.685 5.685 20 C 0.054 3.946 21 C -0.135 4.135 22 H 0.065 0.935 23 H 0.039 0.961 24 H 0.007 0.993 25 H 0.265 0.735 26 H 0.401 0.599 27 H 0.096 0.904 28 H 0.064 0.936 29 H 0.045 0.955 30 H 0.054 0.946 31 H 0.098 0.902 32 H 0.055 0.945 33 H 0.083 0.917 34 H 0.352 0.648 35 H 0.097 0.903 36 H 0.032 0.968 37 H 0.076 0.924 38 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.994 -8.907 14.279 17.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.169 3.831 3 H 0.011 0.989 4 C -0.585 4.585 5 H 0.091 0.909 6 C -0.186 4.186 7 N -0.557 5.557 8 Si 0.797 3.203 9 H -0.195 1.195 10 H -0.212 1.212 11 H -0.188 1.188 12 N -0.351 5.351 13 C 0.294 3.706 14 O -0.477 6.477 15 C -0.080 4.080 16 C -0.192 4.192 17 C -0.162 4.162 18 C -0.083 4.083 19 N -0.315 5.315 20 C -0.076 4.076 21 C -0.174 4.174 22 H 0.083 0.917 23 H 0.058 0.942 24 H 0.026 0.974 25 H 0.074 0.926 26 H 0.236 0.764 27 H 0.115 0.885 28 H 0.083 0.917 29 H 0.065 0.935 30 H 0.073 0.927 31 H 0.117 0.883 32 H 0.073 0.927 33 H 0.101 0.899 34 H 0.171 0.829 35 H 0.115 0.885 36 H 0.051 0.949 37 H 0.095 0.905 38 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 3.106 -7.621 14.001 16.240 hybrid contribution 0.994 -0.458 -1.322 1.716 sum 4.100 -8.080 12.678 15.583 Atomic orbital electron populations 1.21855 0.98477 0.99237 0.99212 1.18271 0.90913 0.91693 0.82190 0.98867 1.21548 1.32582 1.13519 0.90854 0.90921 1.25828 0.94859 0.95554 1.02407 1.70069 1.37072 1.23953 1.24599 0.85329 0.79010 0.78039 0.77872 1.19538 1.21246 1.18751 1.46261 1.65187 1.13948 1.09748 1.21253 0.76910 0.86940 0.85515 1.90574 1.52996 1.18514 1.85618 1.20930 0.98110 0.96924 0.92075 1.21838 0.92807 1.00897 1.03694 1.22034 0.98860 0.98347 0.96928 1.22137 0.90789 0.93869 1.01478 1.60559 1.53569 1.10992 1.06407 1.22006 0.96423 0.95609 0.93581 1.22311 0.95211 0.95927 1.03957 0.91669 0.94181 0.97408 0.92564 0.76447 0.88494 0.91724 0.93534 0.92737 0.88313 0.92695 0.89884 0.82914 0.88491 0.94904 0.90502 0.87540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.73 9.26 71.98 0.67 -6.06 16 2 C 0.27 14.45 2.56 44.24 0.11 14.56 16 3 H -0.01 -0.41 7.58 -2.39 -0.02 -0.43 16 4 C -0.55 -29.28 8.73 25.60 0.22 -29.06 16 5 H 0.07 3.62 7.74 -2.91 -0.02 3.60 16 6 C 0.01 0.73 5.30 84.65 0.45 1.18 16 7 N -0.92 -53.51 11.32 21.45 0.24 -53.27 16 8 Si 0.97 42.21 29.54 68.60 2.03 44.24 16 9 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 10 H -0.29 -12.44 7.11 99.48 0.71 -11.73 16 11 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 12 N -0.70 -29.53 4.85 -446.09 -2.16 -31.69 16 13 C 0.51 20.27 5.05 87.66 0.44 20.72 16 14 O -0.60 -29.44 13.46 -3.02 -0.04 -29.48 16 15 C -0.08 -2.09 0.63 -52.85 -0.03 -2.12 16 16 C -0.13 -3.00 8.38 71.98 0.60 -2.40 16 17 C -0.12 -3.11 4.51 30.65 0.14 -2.97 16 18 C 0.05 1.34 6.28 86.33 0.54 1.88 16 19 N -0.69 -16.85 6.87 -514.01 -3.53 -20.38 16 20 C 0.05 1.37 6.35 86.32 0.55 1.92 16 21 C -0.13 -2.90 4.79 30.65 0.15 -2.75 16 22 H 0.06 3.72 6.07 -2.38 -0.01 3.70 16 23 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 24 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 25 H 0.27 14.60 8.31 -92.70 -0.77 13.83 16 26 H 0.40 14.33 7.36 -92.71 -0.68 13.65 16 27 H 0.10 1.48 8.14 -2.38 -0.02 1.46 16 28 H 0.06 1.42 7.56 -2.39 -0.02 1.40 16 29 H 0.05 1.17 8.14 -2.38 -0.02 1.15 16 30 H 0.05 1.59 8.04 -2.39 -0.02 1.57 16 31 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.05 2.15 5.72 -2.39 -0.01 2.13 16 33 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 34 H 0.35 6.29 8.86 -89.69 -0.79 5.49 16 35 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 36 H 0.03 1.14 7.31 -2.38 -0.02 1.12 16 37 H 0.08 1.63 7.53 -2.39 -0.02 1.61 16 38 H 0.11 1.56 8.14 -2.39 -0.02 1.55 16 Total: -1.00 -68.25 296.41 -0.05 -68.30 By element: Atomic # 1 Polarization: 27.81 SS G_CDS: -0.42 Total: 27.39 kcal Atomic # 6 Polarization: -8.94 SS G_CDS: 3.84 Total: -5.10 kcal Atomic # 7 Polarization: -99.89 SS G_CDS: -5.45 Total: -105.34 kcal Atomic # 8 Polarization: -29.44 SS G_CDS: -0.04 Total: -29.48 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 2.03 Total: 44.24 kcal Total: -68.25 -0.05 -68.30 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062841435.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.286 kcal (2) G-P(sol) polarization free energy of solvation -68.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds