Wall clock time and date at job start Mon Mar 30 2020 03:19:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.46903 * 2 1 4 4 C 1.50700 * 109.46848 * 119.99689 * 2 1 3 5 5 H 1.07997 * 120.00272 * 120.00385 * 4 2 1 6 6 C 1.37881 * 119.99885 * 300.00211 * 4 2 1 7 7 N 1.31509 * 120.00345 * 359.97438 * 6 4 2 8 8 Si 1.86807 * 119.99885 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.46911 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.47065 * 120.00028 * 8 6 4 11 11 H 1.48492 * 109.46996 * 240.00152 * 8 6 4 12 12 N 1.46493 * 109.47638 * 239.99559 * 2 1 3 13 13 C 1.34784 * 119.99864 * 84.99998 * 12 2 1 14 14 O 1.21283 * 119.99649 * 359.72839 * 13 12 2 15 15 C 1.50694 * 119.99988 * 179.72721 * 13 12 2 16 16 C 1.53001 * 109.50372 * 300.00052 * 15 13 12 17 17 C 1.53118 * 109.50126 * 179.97438 * 15 13 12 18 18 C 1.53119 * 109.16415 * 297.71413 * 17 15 13 19 19 C 1.53036 * 109.27575 * 302.34600 * 18 17 15 20 20 N 1.46842 * 109.52457 * 59.17852 * 19 18 17 21 21 C 1.46931 * 111.21955 * 298.25590 * 20 19 18 22 22 H 1.08994 * 109.47399 * 300.00132 * 1 2 3 23 23 H 1.09003 * 109.46886 * 60.00613 * 1 2 3 24 24 H 1.09003 * 109.46903 * 179.97438 * 1 2 3 25 25 H 0.96995 * 120.00482 * 179.97438 * 7 6 4 26 26 H 0.97000 * 120.00740 * 264.72691 * 12 2 1 27 27 H 1.09000 * 109.47237 * 59.99937 * 16 15 13 28 28 H 1.09003 * 109.47011 * 180.02562 * 16 15 13 29 29 H 1.08997 * 109.46935 * 299.99785 * 16 15 13 30 30 H 1.09002 * 109.52359 * 57.62185 * 17 15 13 31 31 H 1.09004 * 109.52525 * 177.80345 * 17 15 13 32 32 H 1.08993 * 109.50241 * 62.28757 * 18 17 15 33 33 H 1.08999 * 109.50452 * 182.40426 * 18 17 15 34 34 H 1.09001 * 109.46367 * 179.19484 * 19 18 17 35 35 H 1.09000 * 109.46212 * 299.17372 * 19 18 17 36 36 H 1.00898 * 111.00294 * 174.15784 * 20 19 18 37 37 H 1.08996 * 109.45219 * 301.72854 * 21 20 19 38 38 H 1.09007 * 109.51501 * 181.73890 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5884 1.1316 6 6 1.6991 -0.2392 2.4828 7 7 0.9434 0.8303 2.6034 8 14 2.3223 -1.1193 4.0081 9 1 3.1482 -2.2854 3.6040 10 1 3.1470 -0.1855 4.8162 11 1 1.1676 -1.5864 4.8165 12 7 2.0184 -0.6906 -1.1960 13 6 2.1472 -0.0183 -2.3571 14 8 1.8540 1.1572 -2.4128 15 6 2.6555 -0.7272 -3.5859 16 6 4.0597 -1.2721 -3.3172 17 6 2.7054 0.2555 -4.7590 18 6 1.2885 0.7518 -5.0597 19 6 0.3876 -0.4468 -5.3658 20 7 0.3727 -1.3565 -4.2132 21 6 1.7156 -1.8836 -3.9342 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3633 -1.0277 -0.0005 25 1 0.7087 1.1615 3.4843 26 1 2.2530 -1.6308 -1.1515 27 1 4.0242 -1.9724 -2.4827 28 1 4.4270 -1.7843 -4.2065 29 1 4.7285 -0.4473 -3.0712 30 1 3.3403 1.1023 -4.4981 31 1 3.1097 -0.2466 -5.6380 32 1 0.8994 1.2878 -4.1941 33 1 1.3117 1.4190 -5.9213 34 1 -0.6254 -0.0980 -5.5663 35 1 0.7697 -0.9745 -6.2397 36 1 -0.2880 -2.1062 -4.3527 37 1 2.0912 -2.4044 -4.8149 38 1 1.6672 -2.5777 -3.0951 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062860738.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:09 Heat of formation + Delta-G solvation = -52.126658 kcal Electronic energy + Delta-G solvation = -18432.878688 eV Core-core repulsion = 15695.397049 eV Total energy + Delta-G solvation = -2737.481640 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.01277 -37.07223 -34.63434 -33.27396 -32.28548 -31.18763 -28.54512 -26.49630 -25.15565 -23.68765 -22.97464 -21.15768 -19.88429 -18.69706 -16.78005 -16.20855 -15.45679 -15.14583 -14.47471 -14.31917 -14.08089 -13.85443 -13.39815 -13.17241 -12.68402 -12.32713 -12.19968 -11.87550 -11.73969 -11.68460 -11.40745 -11.00773 -10.91147 -10.68780 -10.42930 -10.22459 -10.21443 -10.12785 -10.11816 -8.92220 -8.71115 -8.46650 -8.21832 -7.68713 -6.04987 -4.13664 3.27165 3.34738 3.37423 3.64155 4.16581 4.33984 4.48916 4.79961 5.01013 5.15270 5.26984 5.29581 5.45847 5.50614 5.62047 5.63896 5.74921 5.79442 5.92979 6.03887 6.09526 6.19050 6.31355 6.45782 6.82525 6.98846 7.11948 7.17482 7.31076 7.48367 7.63656 7.72089 7.82041 8.04969 8.26882 8.84033 8.91623 9.34883 9.55448 11.00881 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.037813 B = 0.006507 C = 0.006224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.303916 B = 4302.214716 C = 4497.990777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.267 3.733 3 H 0.045 0.955 4 C -0.531 4.531 5 H 0.060 0.940 6 C 0.065 3.935 7 N -0.883 5.883 8 Si 0.899 3.101 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.706 5.706 13 C 0.531 3.469 14 O -0.554 6.554 15 C -0.084 4.084 16 C -0.139 4.139 17 C -0.091 4.091 18 C -0.131 4.131 19 C 0.062 3.938 20 N -0.684 5.684 21 C 0.075 3.925 22 H 0.085 0.915 23 H 0.016 0.984 24 H 0.024 0.976 25 H 0.262 0.738 26 H 0.383 0.617 27 H 0.063 0.937 28 H 0.059 0.941 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.055 0.945 32 H 0.102 0.898 33 H 0.057 0.943 34 H 0.070 0.930 35 H 0.021 0.979 36 H 0.341 0.659 37 H 0.033 0.967 38 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.194 -6.167 -13.893 15.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.165 3.835 3 H 0.063 0.937 4 C -0.569 4.569 5 H 0.078 0.922 6 C -0.138 4.138 7 N -0.521 5.521 8 Si 0.727 3.273 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.209 1.209 12 N -0.353 5.353 13 C 0.316 3.684 14 O -0.433 6.433 15 C -0.088 4.088 16 C -0.197 4.197 17 C -0.128 4.128 18 C -0.168 4.168 19 C -0.067 4.067 20 N -0.315 5.315 21 C -0.055 4.055 22 H 0.104 0.896 23 H 0.035 0.965 24 H 0.043 0.957 25 H 0.072 0.928 26 H 0.215 0.785 27 H 0.082 0.918 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.073 0.927 32 H 0.120 0.880 33 H 0.076 0.924 34 H 0.088 0.912 35 H 0.039 0.961 36 H 0.159 0.841 37 H 0.051 0.949 38 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 1.933 -4.688 -13.290 14.224 hybrid contribution 0.482 -1.634 0.162 1.711 sum 2.415 -6.322 -13.128 14.770 Atomic orbital electron populations 1.22006 0.98457 0.98919 1.00644 1.18660 0.91057 0.93723 0.80068 0.93723 1.21292 1.32095 1.13035 0.90507 0.92225 1.24885 0.94910 0.94974 0.98983 1.69922 1.36087 1.22530 1.23587 0.86435 0.78578 0.79524 0.82785 1.19808 1.20952 1.20932 1.46391 1.65153 1.13218 1.10527 1.19826 0.77692 0.86963 0.83902 1.90548 1.51587 1.16522 1.84643 1.20924 0.95740 0.96436 0.95719 1.21802 0.94650 1.01445 1.01820 1.21352 0.97884 0.98192 0.95421 1.21812 0.94814 0.97096 1.03124 1.21918 1.00106 0.94353 0.90334 1.60124 1.07692 1.22096 1.41622 1.21905 0.88733 0.94887 0.99957 0.89630 0.96453 0.95729 0.92752 0.78455 0.91810 0.92224 0.91800 0.91243 0.92679 0.87993 0.92401 0.91162 0.96060 0.84079 0.94889 0.90409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.67 9.26 37.16 0.34 -3.33 16 2 C 0.27 6.99 2.56 -69.09 -0.18 6.81 16 3 H 0.04 1.35 7.58 -51.93 -0.39 0.96 16 4 C -0.53 -14.37 8.73 -34.44 -0.30 -14.67 16 5 H 0.06 1.54 7.73 -52.49 -0.41 1.14 16 6 C 0.07 1.79 5.30 -17.82 -0.09 1.70 16 7 N -0.88 -25.43 11.32 55.43 0.63 -24.81 16 8 Si 0.90 20.95 29.54 -169.99 -5.02 15.93 16 9 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 12 N -0.71 -15.16 4.86 -54.94 -0.27 -15.43 16 13 C 0.53 10.87 5.79 -10.98 -0.06 10.81 16 14 O -0.55 -13.45 13.46 5.56 0.07 -13.37 16 15 C -0.08 -1.28 0.63 -155.58 -0.10 -1.38 16 16 C -0.14 -1.78 8.38 37.16 0.31 -1.47 16 17 C -0.09 -1.30 4.43 -26.61 -0.12 -1.42 16 18 C -0.13 -1.94 5.77 -26.65 -0.15 -2.10 16 19 C 0.06 0.80 6.55 -3.84 -0.03 0.78 16 20 N -0.68 -9.52 6.45 -113.76 -0.73 -10.26 16 21 C 0.07 0.99 5.19 -3.79 -0.02 0.97 16 22 H 0.09 2.40 6.07 -51.93 -0.32 2.08 16 23 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 24 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 26 H 0.38 7.29 7.37 -40.82 -0.30 6.99 16 27 H 0.06 0.79 7.57 -51.93 -0.39 0.40 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.07 1.07 8.04 -51.93 -0.42 0.66 16 31 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.10 1.94 5.75 -51.93 -0.30 1.64 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.02 0.24 8.14 -51.93 -0.42 -0.18 16 36 H 0.34 3.95 8.90 -39.29 -0.35 3.60 16 37 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.08 1.00 7.55 -51.93 -0.39 0.61 16 LS Contribution 297.69 15.07 4.49 4.49 Total: -1.00 -31.06 297.69 -7.43 -38.49 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: -6.21 Total: 8.25 kcal Atomic # 6 Polarization: -2.90 SS G_CDS: -0.39 Total: -3.30 kcal Atomic # 7 Polarization: -50.12 SS G_CDS: -0.37 Total: -50.49 kcal Atomic # 8 Polarization: -13.45 SS G_CDS: 0.07 Total: -13.37 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -31.06 -7.43 -38.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062860738.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.637 kcal (2) G-P(sol) polarization free energy of solvation -31.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds