Wall clock time and date at job start Mon Mar 30 2020 03:19:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.46903 * 2 1 4 4 C 1.50700 * 109.46848 * 119.99689 * 2 1 3 5 5 H 1.07997 * 120.00272 * 120.00385 * 4 2 1 6 6 C 1.37881 * 119.99885 * 300.00211 * 4 2 1 7 7 N 1.31509 * 120.00345 * 359.97438 * 6 4 2 8 8 Si 1.86807 * 119.99885 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.46911 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.47065 * 120.00028 * 8 6 4 11 11 H 1.48492 * 109.46996 * 240.00152 * 8 6 4 12 12 N 1.46493 * 109.47638 * 239.99559 * 2 1 3 13 13 C 1.34784 * 119.99864 * 84.99998 * 12 2 1 14 14 O 1.21283 * 119.99649 * 359.72839 * 13 12 2 15 15 C 1.50694 * 119.99988 * 179.72721 * 13 12 2 16 16 C 1.53001 * 109.50372 * 300.00052 * 15 13 12 17 17 C 1.53118 * 109.50126 * 179.97438 * 15 13 12 18 18 C 1.53119 * 109.16415 * 297.71413 * 17 15 13 19 19 C 1.53036 * 109.27575 * 302.34600 * 18 17 15 20 20 N 1.46842 * 109.52457 * 59.17852 * 19 18 17 21 21 C 1.46931 * 111.21955 * 298.25590 * 20 19 18 22 22 H 1.08994 * 109.47399 * 300.00132 * 1 2 3 23 23 H 1.09003 * 109.46886 * 60.00613 * 1 2 3 24 24 H 1.09003 * 109.46903 * 179.97438 * 1 2 3 25 25 H 0.96995 * 120.00482 * 179.97438 * 7 6 4 26 26 H 0.97000 * 120.00740 * 264.72691 * 12 2 1 27 27 H 1.09000 * 109.47237 * 59.99937 * 16 15 13 28 28 H 1.09003 * 109.47011 * 180.02562 * 16 15 13 29 29 H 1.08997 * 109.46935 * 299.99785 * 16 15 13 30 30 H 1.09002 * 109.52359 * 57.62185 * 17 15 13 31 31 H 1.09004 * 109.52525 * 177.80345 * 17 15 13 32 32 H 1.08993 * 109.50241 * 62.28757 * 18 17 15 33 33 H 1.08999 * 109.50452 * 182.40426 * 18 17 15 34 34 H 1.09001 * 109.46367 * 179.19484 * 19 18 17 35 35 H 1.09000 * 109.46212 * 299.17372 * 19 18 17 36 36 H 1.00898 * 111.00294 * 174.15784 * 20 19 18 37 37 H 1.08996 * 109.45219 * 301.72854 * 21 20 19 38 38 H 1.09007 * 109.51501 * 181.73890 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5884 1.1316 6 6 1.6991 -0.2392 2.4828 7 7 0.9434 0.8303 2.6034 8 14 2.3223 -1.1193 4.0081 9 1 3.1482 -2.2854 3.6040 10 1 3.1470 -0.1855 4.8162 11 1 1.1676 -1.5864 4.8165 12 7 2.0184 -0.6906 -1.1960 13 6 2.1472 -0.0183 -2.3571 14 8 1.8540 1.1572 -2.4128 15 6 2.6555 -0.7272 -3.5859 16 6 4.0597 -1.2721 -3.3172 17 6 2.7054 0.2555 -4.7590 18 6 1.2885 0.7518 -5.0597 19 6 0.3876 -0.4468 -5.3658 20 7 0.3727 -1.3565 -4.2132 21 6 1.7156 -1.8836 -3.9342 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3633 -1.0277 -0.0005 25 1 0.7087 1.1615 3.4843 26 1 2.2530 -1.6308 -1.1515 27 1 4.0242 -1.9724 -2.4827 28 1 4.4270 -1.7843 -4.2065 29 1 4.7285 -0.4473 -3.0712 30 1 3.3403 1.1023 -4.4981 31 1 3.1097 -0.2466 -5.6380 32 1 0.8994 1.2878 -4.1941 33 1 1.3117 1.4190 -5.9213 34 1 -0.6254 -0.0980 -5.5663 35 1 0.7697 -0.9745 -6.2397 36 1 -0.2880 -2.1062 -4.3527 37 1 2.0912 -2.4044 -4.8149 38 1 1.6672 -2.5777 -3.0951 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062860738.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:08 Heat of formation + Delta-G solvation = -75.279129 kcal Electronic energy + Delta-G solvation = -18433.882655 eV Core-core repulsion = 15695.397049 eV Total energy + Delta-G solvation = -2738.485606 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.41577 -38.52397 -36.56903 -34.63369 -33.99651 -32.44298 -30.48795 -27.50730 -27.31018 -24.83597 -24.44329 -22.59800 -21.51871 -20.35953 -18.42086 -17.54326 -17.08396 -16.95485 -16.05072 -15.68043 -15.34342 -15.13310 -14.69033 -14.65868 -14.39583 -13.83211 -13.65917 -13.28913 -13.06980 -12.87496 -12.85221 -12.80307 -12.72172 -12.59349 -12.24683 -12.09584 -11.71251 -11.30870 -11.24023 -11.03806 -10.61666 -10.27348 -9.57979 -9.24445 -8.15207 -6.32867 1.44679 1.45097 1.57661 2.06325 2.38271 2.74847 3.14698 3.34943 3.67733 3.85703 3.98709 4.23948 4.29827 4.42450 4.61486 4.67137 4.71175 4.79198 4.80414 4.83120 4.97940 4.99850 5.02071 5.08741 5.16856 5.27586 5.35999 5.47738 5.59777 5.70508 5.78147 5.97987 6.13975 6.16212 6.59363 6.76972 7.13544 7.35898 7.75025 8.91370 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.037813 B = 0.006507 C = 0.006224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.303916 B = 4302.214716 C = 4497.990777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.275 3.725 3 H -0.009 1.009 4 C -0.544 4.544 5 H 0.073 0.927 6 C 0.012 3.988 7 N -0.920 5.920 8 Si 0.973 3.027 9 H -0.258 1.258 10 H -0.284 1.284 11 H -0.278 1.278 12 N -0.703 5.703 13 C 0.524 3.476 14 O -0.599 6.599 15 C -0.078 4.078 16 C -0.136 4.136 17 C -0.090 4.090 18 C -0.134 4.134 19 C 0.067 3.933 20 N -0.712 5.712 21 C 0.077 3.923 22 H 0.061 0.939 23 H 0.006 0.994 24 H 0.036 0.964 25 H 0.264 0.736 26 H 0.398 0.602 27 H 0.066 0.934 28 H 0.097 0.903 29 H 0.049 0.951 30 H 0.048 0.952 31 H 0.093 0.907 32 H 0.051 0.949 33 H 0.075 0.925 34 H 0.072 0.928 35 H 0.051 0.949 36 H 0.355 0.645 37 H 0.069 0.931 38 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.253 -8.979 -15.128 17.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.171 3.829 3 H 0.009 0.991 4 C -0.582 4.582 5 H 0.091 0.909 6 C -0.188 4.188 7 N -0.558 5.558 8 Si 0.798 3.202 9 H -0.182 1.182 10 H -0.210 1.210 11 H -0.204 1.204 12 N -0.351 5.351 13 C 0.311 3.689 14 O -0.481 6.481 15 C -0.082 4.082 16 C -0.194 4.194 17 C -0.128 4.128 18 C -0.171 4.171 19 C -0.062 4.062 20 N -0.345 5.345 21 C -0.052 4.052 22 H 0.080 0.920 23 H 0.026 0.974 24 H 0.055 0.945 25 H 0.074 0.926 26 H 0.233 0.767 27 H 0.085 0.915 28 H 0.116 0.884 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.111 0.889 32 H 0.070 0.930 33 H 0.093 0.907 34 H 0.090 0.910 35 H 0.069 0.931 36 H 0.174 0.826 37 H 0.087 0.913 38 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 3.001 -7.542 -14.556 16.666 hybrid contribution 0.128 -0.670 0.505 0.849 sum 3.129 -8.212 -14.051 16.573 Atomic orbital electron populations 1.21790 0.98552 0.98990 0.98912 1.18221 0.90891 0.91520 0.82244 0.99130 1.21602 1.32327 1.13411 0.90899 0.90927 1.25836 0.94914 0.95596 1.02412 1.70077 1.37213 1.24087 1.24441 0.85284 0.78091 0.78531 0.78340 1.18213 1.20999 1.20419 1.46149 1.65420 1.13797 1.09733 1.20921 0.76362 0.86605 0.84982 1.90542 1.53204 1.18904 1.85462 1.20970 0.97505 0.97004 0.92675 1.21825 0.92626 1.01185 1.03791 1.21395 0.97283 0.97691 0.96428 1.21767 0.95578 0.98139 1.01659 1.21873 0.99897 0.93511 0.90951 1.60069 1.08652 1.23141 1.42676 1.21929 0.87960 0.93779 1.01555 0.91984 0.97447 0.94491 0.92648 0.76727 0.91471 0.88449 0.93213 0.93364 0.88861 0.93048 0.90688 0.90983 0.93113 0.82557 0.91334 0.90160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.64 9.26 71.98 0.67 -5.97 16 2 C 0.28 14.91 2.56 44.25 0.11 15.02 16 3 H -0.01 -0.59 7.58 -2.39 -0.02 -0.61 16 4 C -0.54 -29.63 8.73 25.60 0.22 -29.40 16 5 H 0.07 3.68 7.73 -2.91 -0.02 3.66 16 6 C 0.01 0.66 5.30 84.66 0.45 1.11 16 7 N -0.92 -54.31 11.32 21.45 0.24 -54.07 16 8 Si 0.97 42.74 29.54 68.60 2.03 44.77 16 9 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 10 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 11 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 12 N -0.70 -30.51 4.86 -446.10 -2.17 -32.68 16 13 C 0.52 21.78 5.79 87.65 0.51 22.28 16 14 O -0.60 -30.70 13.46 -3.04 -0.04 -30.75 16 15 C -0.08 -2.22 0.63 -52.88 -0.03 -2.25 16 16 C -0.14 -3.10 8.38 71.98 0.60 -2.50 16 17 C -0.09 -2.43 4.43 30.67 0.14 -2.30 16 18 C -0.13 -3.87 5.77 30.65 0.18 -3.69 16 19 C 0.07 1.56 6.55 86.33 0.57 2.13 16 20 N -0.71 -18.29 6.45 -513.82 -3.31 -21.60 16 21 C 0.08 1.77 5.19 86.31 0.45 2.22 16 22 H 0.06 3.62 6.07 -2.39 -0.01 3.60 16 23 H 0.01 0.35 8.14 -2.39 -0.02 0.34 16 24 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 25 H 0.26 14.70 8.31 -92.71 -0.77 13.93 16 26 H 0.40 14.78 7.37 -92.71 -0.68 14.09 16 27 H 0.07 1.48 7.57 -2.39 -0.02 1.46 16 28 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.05 1.48 8.04 -2.39 -0.02 1.46 16 31 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.05 2.04 5.75 -2.39 -0.01 2.02 16 33 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.35 7.31 8.90 -89.70 -0.80 6.51 16 37 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.08 1.81 7.55 -2.38 -0.02 1.79 16 Total: -1.00 -70.68 297.69 0.17 -70.51 By element: Atomic # 1 Polarization: 27.60 SS G_CDS: -0.43 Total: 27.17 kcal Atomic # 6 Polarization: -7.21 SS G_CDS: 3.86 Total: -3.35 kcal Atomic # 7 Polarization: -103.11 SS G_CDS: -5.24 Total: -108.35 kcal Atomic # 8 Polarization: -30.70 SS G_CDS: -0.04 Total: -30.75 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.77 kcal Total: -70.68 0.17 -70.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062860738.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.773 kcal (2) G-P(sol) polarization free energy of solvation -70.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds