Wall clock time and date at job start Mon Mar 30 2020 03:19:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08999 * 109.47058 * 2 1 4 4 C 1.50696 * 109.46920 * 240.00333 * 2 1 3 5 5 H 1.08002 * 120.00157 * 239.99968 * 4 2 1 6 6 C 1.37881 * 120.00447 * 60.00039 * 4 2 1 7 7 N 1.31510 * 119.99635 * 359.97438 * 6 4 2 8 8 Si 1.86792 * 120.00210 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47485 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.47198 * 120.00237 * 8 6 4 11 11 H 1.48498 * 109.47682 * 240.00190 * 8 6 4 12 12 N 1.46499 * 109.47014 * 120.00332 * 2 1 3 13 13 C 1.34777 * 119.99665 * 275.27733 * 12 2 1 14 14 O 1.21283 * 119.99990 * 359.71991 * 13 12 2 15 15 C 1.50698 * 119.99538 * 179.72653 * 13 12 2 16 16 C 1.53005 * 109.50151 * 299.99261 * 15 13 12 17 17 C 1.53122 * 109.50296 * 179.97438 * 15 13 12 18 18 C 1.53130 * 109.15527 * 297.71143 * 17 15 13 19 19 C 1.53036 * 109.27510 * 302.34426 * 18 17 15 20 20 N 1.46837 * 109.52505 * 59.18338 * 19 18 17 21 21 C 1.46926 * 111.22003 * 298.25288 * 20 19 18 22 22 H 1.08995 * 109.47066 * 300.00185 * 1 2 3 23 23 H 1.09005 * 109.46722 * 59.99817 * 1 2 3 24 24 H 1.09000 * 109.47169 * 179.97438 * 1 2 3 25 25 H 0.97000 * 120.00295 * 179.97438 * 7 6 4 26 26 H 0.97001 * 119.99790 * 94.99446 * 12 2 1 27 27 H 1.08998 * 109.46796 * 60.00580 * 16 15 13 28 28 H 1.09005 * 109.46610 * 180.02562 * 16 15 13 29 29 H 1.08997 * 109.47127 * 300.00295 * 16 15 13 30 30 H 1.09000 * 109.52401 * 57.61354 * 17 15 13 31 31 H 1.08999 * 109.52554 * 177.81023 * 17 15 13 32 32 H 1.08996 * 109.50386 * 62.28674 * 18 17 15 33 33 H 1.09001 * 109.49548 * 182.40589 * 18 17 15 34 34 H 1.09004 * 109.46005 * 179.20085 * 19 18 17 35 35 H 1.09006 * 109.46165 * 299.17317 * 19 18 17 36 36 H 1.00902 * 111.00484 * 174.15899 * 20 19 18 37 37 H 1.08999 * 109.45481 * 301.73228 * 21 20 19 38 38 H 1.09009 * 109.51802 * 181.73929 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5885 -1.1315 6 6 1.6993 -0.2393 -2.4828 7 7 0.9428 0.8297 -2.6034 8 14 2.3225 -1.1194 -4.0080 9 1 3.1474 -2.2862 -3.6039 10 1 1.1678 -1.5864 -4.8166 11 1 3.1473 -0.1857 -4.8161 12 7 2.0184 -0.6907 1.1961 13 6 2.1418 -0.0197 2.3585 14 8 1.8534 1.1571 2.4129 15 6 2.6382 -0.7317 3.5904 16 6 1.6927 -1.8860 3.9291 17 6 2.6853 0.2502 4.7643 18 6 3.6773 1.3714 4.4421 19 6 5.0529 0.7631 4.1597 20 7 4.9549 -0.1681 3.0286 21 6 4.0436 -1.2798 3.3324 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 0.7088 1.1614 -3.4844 26 1 2.2490 -1.6319 1.1525 27 1 1.6597 -2.5856 3.0939 28 1 2.0521 -2.4003 4.8205 29 1 0.6927 -1.4940 4.1145 30 1 1.6943 0.6754 4.9236 31 1 3.0072 -0.2733 5.6645 32 1 3.3346 1.9194 3.5645 33 1 3.7472 2.0506 5.2918 34 1 5.7582 1.5576 3.9160 35 1 5.4010 0.2267 5.0425 36 1 5.8659 -0.5103 2.7618 37 1 4.3964 -1.8066 4.2190 38 1 4.0153 -1.9687 2.4881 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062860739.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:11 Heat of formation + Delta-G solvation = -51.989479 kcal Electronic energy + Delta-G solvation = -18417.864214 eV Core-core repulsion = 15680.388523 eV Total energy + Delta-G solvation = -2737.475691 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.00719 -37.07004 -34.63719 -33.26778 -32.27564 -31.17698 -28.57070 -26.50102 -25.17125 -23.66599 -22.97837 -21.14737 -19.90915 -18.68927 -16.73900 -16.20247 -15.47875 -15.14389 -14.46226 -14.34444 -13.99167 -13.83275 -13.51263 -13.15247 -12.63079 -12.30591 -12.22786 -11.87455 -11.85938 -11.57912 -11.45639 -11.00899 -10.91195 -10.66959 -10.49791 -10.24314 -10.18741 -10.16292 -10.08388 -8.93357 -8.70282 -8.45772 -8.21079 -7.68488 -6.04406 -4.12419 3.27905 3.35465 3.38247 3.63982 4.17959 4.35196 4.49856 4.80405 5.01684 5.15412 5.27980 5.30883 5.46465 5.51284 5.62077 5.65320 5.74474 5.80143 5.92647 6.04249 6.09758 6.18206 6.30098 6.46037 6.83730 6.92924 7.06610 7.15436 7.26247 7.51478 7.62904 7.70940 7.80960 8.04173 8.25590 8.84626 8.91818 9.34980 9.56189 11.01725 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.032200 B = 0.006772 C = 0.006474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.347557 B = 4133.394591 C = 4323.873728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.267 3.733 3 H 0.047 0.953 4 C -0.527 4.527 5 H 0.060 0.940 6 C 0.064 3.936 7 N -0.885 5.885 8 Si 0.900 3.100 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.283 1.283 12 N -0.706 5.706 13 C 0.532 3.468 14 O -0.554 6.554 15 C -0.085 4.085 16 C -0.139 4.139 17 C -0.090 4.090 18 C -0.131 4.131 19 C 0.062 3.938 20 N -0.684 5.684 21 C 0.075 3.925 22 H 0.013 0.987 23 H 0.088 0.912 24 H 0.024 0.976 25 H 0.262 0.738 26 H 0.383 0.617 27 H 0.062 0.938 28 H 0.059 0.941 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.055 0.945 32 H 0.102 0.898 33 H 0.057 0.943 34 H 0.070 0.930 35 H 0.021 0.979 36 H 0.342 0.658 37 H 0.033 0.967 38 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.427 -5.352 13.050 15.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.165 3.835 3 H 0.065 0.935 4 C -0.566 4.566 5 H 0.078 0.922 6 C -0.138 4.138 7 N -0.523 5.523 8 Si 0.727 3.273 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.209 1.209 12 N -0.353 5.353 13 C 0.316 3.684 14 O -0.433 6.433 15 C -0.088 4.088 16 C -0.197 4.197 17 C -0.128 4.128 18 C -0.169 4.169 19 C -0.067 4.067 20 N -0.315 5.315 21 C -0.055 4.055 22 H 0.032 0.968 23 H 0.107 0.893 24 H 0.043 0.957 25 H 0.072 0.928 26 H 0.215 0.785 27 H 0.081 0.919 28 H 0.078 0.922 29 H 0.081 0.919 30 H 0.087 0.913 31 H 0.073 0.927 32 H 0.120 0.880 33 H 0.076 0.924 34 H 0.089 0.911 35 H 0.039 0.961 36 H 0.160 0.840 37 H 0.051 0.949 38 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 4.654 -4.009 12.580 14.000 hybrid contribution 0.987 -1.493 -0.292 1.813 sum 5.641 -5.502 12.288 14.598 Atomic orbital electron populations 1.22082 0.98822 0.98881 1.00738 1.18655 0.90630 0.94012 0.80197 0.93493 1.21267 1.31912 1.12972 0.90415 0.92204 1.24884 0.94940 0.94994 0.98992 1.69917 1.36185 1.22592 1.23572 0.86428 0.78549 0.79526 0.82768 1.19810 1.20989 1.20947 1.46383 1.65262 1.13237 1.10389 1.19825 0.77368 0.87032 0.84142 1.90549 1.51564 1.16077 1.85095 1.20930 0.95530 0.96663 0.95726 1.21799 0.99195 0.96961 1.01720 1.21352 1.00548 0.95806 0.95120 1.21817 0.93787 0.97971 1.03290 1.21919 0.98190 0.95564 0.91045 1.60109 1.14911 1.18011 1.38477 1.21904 0.91555 0.92288 0.99735 0.96779 0.89312 0.95675 0.92773 0.78456 0.91874 0.92181 0.91875 0.91286 0.92681 0.87979 0.92405 0.91138 0.96092 0.83991 0.94936 0.90351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.75 9.26 37.16 0.34 -3.41 16 2 C 0.27 6.99 2.56 -69.08 -0.18 6.81 16 3 H 0.05 1.43 7.58 -51.93 -0.39 1.04 16 4 C -0.53 -14.30 8.73 -34.44 -0.30 -14.60 16 5 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 6 C 0.06 1.77 5.30 -17.82 -0.09 1.68 16 7 N -0.88 -25.48 11.32 55.43 0.63 -24.85 16 8 Si 0.90 21.04 29.54 -169.99 -5.02 16.02 16 9 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 12 N -0.71 -15.16 4.85 -54.93 -0.27 -15.42 16 13 C 0.53 10.88 5.79 -10.99 -0.06 10.82 16 14 O -0.55 -13.45 13.46 5.55 0.07 -13.38 16 15 C -0.08 -1.28 0.63 -155.58 -0.10 -1.38 16 16 C -0.14 -1.74 8.38 37.16 0.31 -1.43 16 17 C -0.09 -1.30 4.43 -26.60 -0.12 -1.42 16 18 C -0.13 -1.97 5.77 -26.65 -0.15 -2.12 16 19 C 0.06 0.82 6.55 -3.84 -0.03 0.79 16 20 N -0.68 -9.85 6.45 -113.76 -0.73 -10.59 16 21 C 0.07 1.01 5.19 -3.79 -0.02 0.99 16 22 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 23 H 0.09 2.46 6.07 -51.93 -0.32 2.15 16 24 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 26 H 0.38 7.28 7.38 -40.82 -0.30 6.98 16 27 H 0.06 0.76 7.57 -51.93 -0.39 0.37 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 30 H 0.07 1.06 8.04 -51.93 -0.42 0.64 16 31 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.10 1.97 5.75 -51.93 -0.30 1.67 16 33 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.02 0.24 8.14 -51.93 -0.42 -0.18 16 36 H 0.34 4.15 8.90 -39.29 -0.35 3.80 16 37 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.08 1.04 7.55 -51.92 -0.39 0.65 16 LS Contribution 297.69 15.07 4.49 4.49 Total: -1.00 -31.13 297.69 -7.43 -38.56 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: -6.21 Total: 8.44 kcal Atomic # 6 Polarization: -2.87 SS G_CDS: -0.39 Total: -3.26 kcal Atomic # 7 Polarization: -50.49 SS G_CDS: -0.37 Total: -50.86 kcal Atomic # 8 Polarization: -13.45 SS G_CDS: 0.07 Total: -13.38 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -31.13 -7.43 -38.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062860739.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.430 kcal (2) G-P(sol) polarization free energy of solvation -31.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds