Wall clock time and date at job start Mon Mar 30 2020 03:19:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08999 * 109.47058 * 2 1 4 4 C 1.50696 * 109.46920 * 240.00333 * 2 1 3 5 5 H 1.08002 * 120.00157 * 239.99968 * 4 2 1 6 6 C 1.37881 * 120.00447 * 60.00039 * 4 2 1 7 7 N 1.31510 * 119.99635 * 359.97438 * 6 4 2 8 8 Si 1.86792 * 120.00210 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47485 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.47198 * 120.00237 * 8 6 4 11 11 H 1.48498 * 109.47682 * 240.00190 * 8 6 4 12 12 N 1.46499 * 109.47014 * 120.00332 * 2 1 3 13 13 C 1.34777 * 119.99665 * 275.27733 * 12 2 1 14 14 O 1.21283 * 119.99990 * 359.71991 * 13 12 2 15 15 C 1.50698 * 119.99538 * 179.72653 * 13 12 2 16 16 C 1.53005 * 109.50151 * 299.99261 * 15 13 12 17 17 C 1.53122 * 109.50296 * 179.97438 * 15 13 12 18 18 C 1.53130 * 109.15527 * 297.71143 * 17 15 13 19 19 C 1.53036 * 109.27510 * 302.34426 * 18 17 15 20 20 N 1.46837 * 109.52505 * 59.18338 * 19 18 17 21 21 C 1.46926 * 111.22003 * 298.25288 * 20 19 18 22 22 H 1.08995 * 109.47066 * 300.00185 * 1 2 3 23 23 H 1.09005 * 109.46722 * 59.99817 * 1 2 3 24 24 H 1.09000 * 109.47169 * 179.97438 * 1 2 3 25 25 H 0.97000 * 120.00295 * 179.97438 * 7 6 4 26 26 H 0.97001 * 119.99790 * 94.99446 * 12 2 1 27 27 H 1.08998 * 109.46796 * 60.00580 * 16 15 13 28 28 H 1.09005 * 109.46610 * 180.02562 * 16 15 13 29 29 H 1.08997 * 109.47127 * 300.00295 * 16 15 13 30 30 H 1.09000 * 109.52401 * 57.61354 * 17 15 13 31 31 H 1.08999 * 109.52554 * 177.81023 * 17 15 13 32 32 H 1.08996 * 109.50386 * 62.28674 * 18 17 15 33 33 H 1.09001 * 109.49548 * 182.40589 * 18 17 15 34 34 H 1.09004 * 109.46005 * 179.20085 * 19 18 17 35 35 H 1.09006 * 109.46165 * 299.17317 * 19 18 17 36 36 H 1.00902 * 111.00484 * 174.15899 * 20 19 18 37 37 H 1.08999 * 109.45481 * 301.73228 * 21 20 19 38 38 H 1.09009 * 109.51802 * 181.73929 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5885 -1.1315 6 6 1.6993 -0.2393 -2.4828 7 7 0.9428 0.8297 -2.6034 8 14 2.3225 -1.1194 -4.0080 9 1 3.1474 -2.2862 -3.6039 10 1 1.1678 -1.5864 -4.8166 11 1 3.1473 -0.1857 -4.8161 12 7 2.0184 -0.6907 1.1961 13 6 2.1418 -0.0197 2.3585 14 8 1.8534 1.1571 2.4129 15 6 2.6382 -0.7317 3.5904 16 6 1.6927 -1.8860 3.9291 17 6 2.6853 0.2502 4.7643 18 6 3.6773 1.3714 4.4421 19 6 5.0529 0.7631 4.1597 20 7 4.9549 -0.1681 3.0286 21 6 4.0436 -1.2798 3.3324 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 0.7088 1.1614 -3.4844 26 1 2.2490 -1.6319 1.1525 27 1 1.6597 -2.5856 3.0939 28 1 2.0521 -2.4003 4.8205 29 1 0.6927 -1.4940 4.1145 30 1 1.6943 0.6754 4.9236 31 1 3.0072 -0.2733 5.6645 32 1 3.3346 1.9194 3.5645 33 1 3.7472 2.0506 5.2918 34 1 5.7582 1.5576 3.9160 35 1 5.4010 0.2267 5.0425 36 1 5.8659 -0.5103 2.7618 37 1 4.3964 -1.8066 4.2190 38 1 4.0153 -1.9687 2.4881 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062860739.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:11 Heat of formation + Delta-G solvation = -75.228225 kcal Electronic energy + Delta-G solvation = -18418.871922 eV Core-core repulsion = 15680.388523 eV Total energy + Delta-G solvation = -2738.483399 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.41401 -38.53098 -36.56814 -34.63249 -33.98949 -32.44696 -30.50178 -27.51318 -27.31041 -24.81961 -24.45781 -22.59952 -21.53645 -20.35415 -18.39769 -17.53305 -17.11897 -16.95525 -16.02044 -15.76307 -15.30410 -15.05527 -14.82684 -14.64850 -14.33142 -13.85733 -13.65537 -13.30874 -13.05655 -12.88042 -12.85590 -12.78300 -12.69498 -12.65907 -12.26309 -12.10038 -11.70789 -11.30822 -11.23674 -11.04415 -10.60270 -10.28883 -9.58148 -9.23922 -8.14868 -6.31826 1.44385 1.45105 1.57483 2.06104 2.39051 2.74629 3.15339 3.34787 3.67845 3.85605 3.98764 4.23731 4.29801 4.42110 4.61358 4.66694 4.71033 4.77493 4.80484 4.83095 4.93170 4.98368 5.01457 5.08186 5.14120 5.27461 5.35901 5.47354 5.59619 5.70850 5.76751 5.99047 6.14527 6.16266 6.58524 6.77598 7.13643 7.36537 7.75205 8.91803 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.032200 B = 0.006772 C = 0.006474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.347557 B = 4133.394591 C = 4323.873728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.275 3.725 3 H -0.010 1.010 4 C -0.540 4.540 5 H 0.071 0.929 6 C 0.011 3.989 7 N -0.920 5.920 8 Si 0.972 3.028 9 H -0.259 1.259 10 H -0.278 1.278 11 H -0.285 1.285 12 N -0.703 5.703 13 C 0.524 3.476 14 O -0.599 6.599 15 C -0.078 4.078 16 C -0.136 4.136 17 C -0.090 4.090 18 C -0.134 4.134 19 C 0.066 3.934 20 N -0.714 5.714 21 C 0.077 3.923 22 H 0.008 0.992 23 H 0.064 0.936 24 H 0.040 0.960 25 H 0.264 0.736 26 H 0.398 0.602 27 H 0.067 0.933 28 H 0.096 0.904 29 H 0.051 0.949 30 H 0.049 0.951 31 H 0.093 0.907 32 H 0.050 0.950 33 H 0.075 0.925 34 H 0.071 0.929 35 H 0.051 0.949 36 H 0.354 0.646 37 H 0.069 0.931 38 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.838 -8.050 14.238 17.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.172 3.828 3 H 0.008 0.992 4 C -0.579 4.579 5 H 0.089 0.911 6 C -0.188 4.188 7 N -0.559 5.559 8 Si 0.797 3.203 9 H -0.183 1.183 10 H -0.204 1.204 11 H -0.211 1.211 12 N -0.351 5.351 13 C 0.311 3.689 14 O -0.481 6.481 15 C -0.082 4.082 16 C -0.194 4.194 17 C -0.127 4.127 18 C -0.172 4.172 19 C -0.063 4.063 20 N -0.348 5.348 21 C -0.053 4.053 22 H 0.027 0.973 23 H 0.083 0.917 24 H 0.059 0.941 25 H 0.073 0.927 26 H 0.233 0.767 27 H 0.086 0.914 28 H 0.115 0.885 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.112 0.888 32 H 0.069 0.931 33 H 0.094 0.906 34 H 0.089 0.911 35 H 0.069 0.931 36 H 0.174 0.826 37 H 0.087 0.913 38 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 6.083 -6.745 13.796 16.517 hybrid contribution 0.540 -0.561 -0.625 0.999 sum 6.623 -7.306 13.170 16.453 Atomic orbital electron populations 1.21892 0.98648 0.99287 0.99267 1.18208 0.90706 0.91603 0.82317 0.99201 1.21571 1.32120 1.13300 0.90865 0.91053 1.25825 0.94967 0.95626 1.02386 1.70073 1.37290 1.24120 1.24399 0.85292 0.78089 0.78519 0.78390 1.18264 1.20371 1.21078 1.46144 1.65530 1.13794 1.09614 1.20920 0.76012 0.86672 0.85261 1.90542 1.53166 1.18446 1.85957 1.20980 0.97278 0.97251 0.92673 1.21823 0.98008 0.95952 1.03575 1.21395 0.99497 0.95664 0.96188 1.21774 0.95252 0.98423 1.01735 1.21878 0.96807 0.95695 0.91882 1.60064 1.16034 1.18962 1.39690 1.21939 0.89937 0.91994 1.01410 0.97258 0.91704 0.94089 0.92679 0.76732 0.91409 0.88479 0.92994 0.93191 0.88826 0.93138 0.90622 0.91101 0.93058 0.82609 0.91308 0.90263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.98 9.26 71.98 0.67 -6.32 16 2 C 0.28 14.92 2.56 44.25 0.11 15.03 16 3 H -0.01 -0.65 7.58 -2.39 -0.02 -0.66 16 4 C -0.54 -29.51 8.73 25.60 0.22 -29.28 16 5 H 0.07 3.65 7.74 -2.91 -0.02 3.62 16 6 C 0.01 0.63 5.30 84.66 0.45 1.08 16 7 N -0.92 -54.39 11.32 21.45 0.24 -54.14 16 8 Si 0.97 42.96 29.54 68.60 2.03 44.98 16 9 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 10 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 11 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 12 N -0.70 -30.48 4.85 -446.09 -2.17 -32.65 16 13 C 0.52 21.77 5.79 87.66 0.51 22.27 16 14 O -0.60 -30.70 13.46 -3.04 -0.04 -30.74 16 15 C -0.08 -2.22 0.63 -52.87 -0.03 -2.25 16 16 C -0.14 -2.99 8.38 71.98 0.60 -2.38 16 17 C -0.09 -2.41 4.43 30.68 0.14 -2.27 16 18 C -0.13 -3.94 5.77 30.65 0.18 -3.76 16 19 C 0.07 1.61 6.55 86.33 0.57 2.17 16 20 N -0.71 -19.23 6.45 -513.83 -3.31 -22.55 16 21 C 0.08 1.81 5.19 86.31 0.45 2.26 16 22 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 23 H 0.06 3.74 6.07 -2.38 -0.01 3.72 16 24 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 25 H 0.26 14.70 8.31 -92.71 -0.77 13.93 16 26 H 0.40 14.76 7.38 -92.71 -0.68 14.08 16 27 H 0.07 1.43 7.57 -2.39 -0.02 1.41 16 28 H 0.10 1.46 8.14 -2.38 -0.02 1.44 16 29 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.05 1.52 8.04 -2.39 -0.02 1.50 16 31 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.05 2.03 5.75 -2.39 -0.01 2.02 16 33 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.07 1.68 8.14 -2.38 -0.02 1.66 16 35 H 0.05 0.96 8.14 -2.38 -0.02 0.94 16 36 H 0.35 7.81 8.90 -89.69 -0.80 7.01 16 37 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.08 1.86 7.55 -2.38 -0.02 1.84 16 Total: -1.00 -70.92 297.69 0.17 -70.75 By element: Atomic # 1 Polarization: 28.23 SS G_CDS: -0.43 Total: 27.80 kcal Atomic # 6 Polarization: -7.31 SS G_CDS: 3.86 Total: -3.46 kcal Atomic # 7 Polarization: -104.10 SS G_CDS: -5.24 Total: -109.34 kcal Atomic # 8 Polarization: -30.70 SS G_CDS: -0.04 Total: -30.74 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.98 kcal Total: -70.92 0.17 -70.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062860739.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.482 kcal (2) G-P(sol) polarization free energy of solvation -70.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds