Wall clock time and date at job start Mon Mar 30 2020 03:19:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.47228 * 2 1 4 4 C 1.50699 * 109.47324 * 239.99579 * 2 1 3 5 5 H 1.08005 * 120.00261 * 240.00187 * 4 2 1 6 6 C 1.37880 * 119.99927 * 59.99945 * 4 2 1 7 7 N 1.31517 * 119.99944 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00004 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47348 * 60.00424 * 8 6 4 10 10 H 1.48503 * 109.46883 * 180.02562 * 8 6 4 11 11 H 1.48496 * 109.47248 * 299.99901 * 8 6 4 12 12 N 1.46500 * 109.47283 * 119.99906 * 2 1 3 13 13 C 1.34779 * 119.99861 * 275.00059 * 12 2 1 14 14 O 1.21283 * 119.99931 * 0.02562 * 13 12 2 15 15 C 1.50700 * 119.99890 * 179.97438 * 13 12 2 16 16 C 1.52998 * 109.50368 * 60.08409 * 15 13 12 17 17 C 1.53123 * 109.50022 * 180.19728 * 15 13 12 18 18 C 1.53123 * 109.16001 * 62.28984 * 17 15 13 19 19 C 1.53036 * 109.27788 * 57.65365 * 18 17 15 20 20 N 1.46842 * 109.52190 * 300.81892 * 19 18 17 21 21 C 1.46848 * 111.20069 * 61.74451 * 20 19 18 22 22 H 1.08994 * 109.47161 * 299.99983 * 1 2 3 23 23 H 1.09000 * 109.47012 * 60.00493 * 1 2 3 24 24 H 1.09007 * 109.46899 * 180.02562 * 1 2 3 25 25 H 0.97000 * 119.99992 * 179.97438 * 7 6 4 26 26 H 0.97006 * 120.00235 * 94.99524 * 12 2 1 27 27 H 1.09001 * 109.46605 * 299.92038 * 16 15 13 28 28 H 1.08997 * 109.47392 * 59.91529 * 16 15 13 29 29 H 1.08996 * 109.47196 * 179.91881 * 16 15 13 30 30 H 1.09000 * 109.52311 * 302.38177 * 17 15 13 31 31 H 1.09007 * 109.52076 * 182.19290 * 17 15 13 32 32 H 1.09000 * 109.50367 * 297.70910 * 18 17 15 33 33 H 1.09006 * 109.50264 * 177.59249 * 18 17 15 34 34 H 1.09002 * 109.46126 * 60.83950 * 19 18 17 35 35 H 1.09000 * 109.45809 * 180.80452 * 19 18 17 36 36 H 1.00901 * 110.99832 * 185.84023 * 20 19 18 37 37 H 1.09003 * 109.46014 * 58.27448 * 21 20 19 38 38 H 1.08995 * 109.46374 * 178.23478 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1313 6 6 1.6993 -0.2395 -2.4827 7 7 0.9427 0.8295 -2.6035 8 14 2.3214 -1.1206 -4.0078 9 1 1.8258 -2.5205 -4.0076 10 1 1.8270 -0.4202 -5.2204 11 1 3.8064 -1.1211 -4.0081 12 7 2.0184 -0.6906 1.1962 13 6 2.1471 -0.0182 2.3571 14 8 1.8582 1.1585 2.4117 15 6 2.6489 -0.7287 3.5877 16 6 4.0522 -1.2782 3.3238 17 6 2.6961 0.2535 4.7615 18 6 1.2789 0.7525 5.0566 19 6 0.3744 -0.4445 5.3585 20 7 0.3624 -1.3536 4.2054 21 6 1.7047 -1.8827 3.9322 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 0.7087 1.1610 -3.4845 26 1 2.2490 -1.6318 1.1527 27 1 4.0168 -1.9795 2.4901 28 1 4.7242 -0.4559 3.0784 29 1 4.4152 -1.7907 4.2146 30 1 3.3337 1.0991 4.5035 31 1 3.0957 -0.2500 5.6419 32 1 0.8943 1.2897 4.1896 33 1 1.3000 1.4193 5.9187 34 1 0.7517 -0.9731 6.2339 35 1 -0.6387 -0.0936 5.5550 36 1 -0.3004 -2.1021 4.3420 37 1 2.0757 -2.4047 4.8143 38 1 1.6577 -2.5765 3.0929 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062860741.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:16 Heat of formation + Delta-G solvation = -52.076209 kcal Electronic energy + Delta-G solvation = -18433.924881 eV Core-core repulsion = 15696.445429 eV Total energy + Delta-G solvation = -2737.479452 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.01409 -37.07412 -34.63304 -33.27345 -32.28429 -31.18920 -28.54293 -26.49740 -25.15123 -23.68488 -22.97417 -21.15792 -19.88247 -18.69635 -16.77983 -16.20729 -15.45475 -15.14059 -14.47591 -14.32348 -14.07924 -13.85642 -13.39835 -13.17556 -12.68265 -12.32445 -12.19283 -11.87386 -11.73741 -11.68325 -11.40055 -11.00823 -10.90709 -10.69157 -10.42883 -10.23749 -10.21864 -10.12410 -10.11453 -8.93517 -8.71023 -8.45845 -8.21763 -7.68620 -6.04436 -4.13328 3.29289 3.34400 3.35590 3.64186 4.16721 4.34148 4.49166 4.79909 5.01100 5.15294 5.27255 5.29584 5.45863 5.50592 5.62061 5.63943 5.74897 5.79474 5.92981 6.03897 6.09533 6.19044 6.31355 6.45831 6.82449 6.99008 7.12158 7.17548 7.31080 7.48414 7.63702 7.71934 7.82228 8.05163 8.27176 8.83858 8.91727 9.34925 9.55621 11.01328 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.037794 B = 0.006510 C = 0.006226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.680682 B = 4300.302666 C = 4495.929191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.267 3.733 3 H 0.045 0.955 4 C -0.532 4.532 5 H 0.058 0.942 6 C 0.066 3.934 7 N -0.884 5.884 8 Si 0.900 3.100 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.277 1.277 12 N -0.706 5.706 13 C 0.531 3.469 14 O -0.554 6.554 15 C -0.084 4.084 16 C -0.139 4.139 17 C -0.090 4.090 18 C -0.131 4.131 19 C 0.062 3.938 20 N -0.684 5.684 21 C 0.075 3.925 22 H 0.016 0.984 23 H 0.085 0.915 24 H 0.023 0.977 25 H 0.264 0.736 26 H 0.383 0.617 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.059 0.941 30 H 0.069 0.931 31 H 0.055 0.945 32 H 0.102 0.898 33 H 0.057 0.943 34 H 0.021 0.979 35 H 0.070 0.930 36 H 0.341 0.659 37 H 0.033 0.967 38 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.142 -6.154 13.873 15.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.166 3.834 3 H 0.063 0.937 4 C -0.571 4.571 5 H 0.077 0.923 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.727 3.273 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.203 1.203 12 N -0.353 5.353 13 C 0.316 3.684 14 O -0.433 6.433 15 C -0.088 4.088 16 C -0.197 4.197 17 C -0.128 4.128 18 C -0.168 4.168 19 C -0.067 4.067 20 N -0.315 5.315 21 C -0.055 4.055 22 H 0.035 0.965 23 H 0.104 0.896 24 H 0.043 0.957 25 H 0.074 0.926 26 H 0.215 0.785 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.088 0.912 31 H 0.073 0.927 32 H 0.120 0.880 33 H 0.076 0.924 34 H 0.039 0.961 35 H 0.088 0.912 36 H 0.159 0.841 37 H 0.051 0.949 38 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 1.882 -4.668 13.264 14.187 hybrid contribution 0.487 -1.656 -0.152 1.733 sum 2.370 -6.324 13.112 14.749 Atomic orbital electron populations 1.22009 0.98466 0.98918 1.00646 1.18650 0.91038 0.93719 0.80033 0.93717 1.21219 1.32244 1.13078 0.90537 0.92333 1.24881 0.94893 0.94980 0.98957 1.69907 1.35923 1.22511 1.23797 0.86545 0.79110 0.79606 0.82017 1.20231 1.21178 1.20262 1.46392 1.65227 1.13132 1.10532 1.19826 0.77656 0.86994 0.83909 1.90549 1.51614 1.16454 1.84690 1.20927 0.95745 0.96431 0.95717 1.21799 0.94667 1.01417 1.01827 1.21352 0.97893 0.98188 0.95410 1.21814 0.94775 0.97108 1.03144 1.21919 1.00107 0.94365 0.90330 1.60107 1.07560 1.22156 1.41698 1.21891 0.88734 0.94886 0.99971 0.96457 0.89622 0.95732 0.92639 0.78461 0.91814 0.91799 0.92225 0.91239 0.92678 0.88003 0.92397 0.96056 0.91164 0.84071 0.94899 0.90424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.68 9.26 37.16 0.34 -3.33 16 2 C 0.27 7.01 2.56 -69.08 -0.18 6.83 16 3 H 0.04 1.36 7.58 -51.93 -0.39 0.96 16 4 C -0.53 -14.42 8.73 -34.44 -0.30 -14.72 16 5 H 0.06 1.51 7.74 -52.48 -0.41 1.10 16 6 C 0.07 1.81 5.30 -17.82 -0.09 1.71 16 7 N -0.88 -25.45 11.32 55.43 0.63 -24.82 16 8 Si 0.90 20.96 29.54 -169.99 -5.02 15.94 16 9 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 10 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 11 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 12 N -0.71 -15.17 4.85 -54.93 -0.27 -15.43 16 13 C 0.53 10.88 5.79 -10.98 -0.06 10.81 16 14 O -0.55 -13.45 13.46 5.56 0.07 -13.38 16 15 C -0.08 -1.28 0.63 -155.58 -0.10 -1.38 16 16 C -0.14 -1.78 8.38 37.16 0.31 -1.47 16 17 C -0.09 -1.30 4.43 -26.60 -0.12 -1.42 16 18 C -0.13 -1.94 5.77 -26.65 -0.15 -2.10 16 19 C 0.06 0.80 6.55 -3.84 -0.03 0.77 16 20 N -0.68 -9.53 6.45 -113.82 -0.73 -10.26 16 21 C 0.07 0.99 5.18 -3.84 -0.02 0.97 16 22 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 23 H 0.09 2.40 6.07 -51.93 -0.32 2.08 16 24 H 0.02 0.59 8.14 -51.92 -0.42 0.17 16 25 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 26 H 0.38 7.29 7.38 -40.82 -0.30 6.99 16 27 H 0.06 0.79 7.57 -51.93 -0.39 0.40 16 28 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.07 1.08 8.04 -51.93 -0.42 0.66 16 31 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.10 1.94 5.75 -51.93 -0.30 1.64 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.02 0.24 8.14 -51.93 -0.42 -0.18 16 35 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.34 3.95 8.90 -39.29 -0.35 3.60 16 37 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.08 1.00 7.55 -51.93 -0.39 0.61 16 LS Contribution 297.69 15.07 4.49 4.49 Total: -1.00 -31.03 297.69 -7.43 -38.46 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: -6.21 Total: 8.32 kcal Atomic # 6 Polarization: -2.92 SS G_CDS: -0.39 Total: -3.31 kcal Atomic # 7 Polarization: -50.14 SS G_CDS: -0.37 Total: -50.52 kcal Atomic # 8 Polarization: -13.45 SS G_CDS: 0.07 Total: -13.38 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -31.03 -7.43 -38.46 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062860741.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.616 kcal (2) G-P(sol) polarization free energy of solvation -31.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds