Wall clock time and date at job start Mon Mar 30 2020 03:15:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47273 * 2 1 4 4 C 1.50706 * 109.47251 * 119.99836 * 2 1 3 5 5 H 1.07999 * 119.99861 * 114.37432 * 4 2 1 6 6 C 1.37876 * 120.00204 * 294.37626 * 4 2 1 7 7 N 1.31512 * 120.00184 * 159.18567 * 6 4 2 8 8 Si 1.86799 * 119.99765 * 339.19267 * 6 4 2 9 9 H 1.48503 * 109.46908 * 180.02562 * 8 6 4 10 10 H 1.48498 * 109.46888 * 299.99283 * 8 6 4 11 11 H 1.48491 * 109.47800 * 59.99727 * 8 6 4 12 12 N 1.46495 * 109.47296 * 240.00242 * 2 1 3 13 13 C 1.46508 * 119.99607 * 293.11200 * 12 2 1 14 14 C 1.34771 * 120.00346 * 113.11309 * 12 2 1 15 15 O 1.21284 * 119.99939 * 184.68143 * 14 12 2 16 16 C 1.50699 * 120.00144 * 4.67206 * 14 12 2 17 17 C 1.53004 * 110.28750 * 295.98904 * 16 14 12 18 18 C 1.54252 * 110.32593 * 173.85700 * 16 14 12 19 19 C 1.54378 * 105.06545 * 241.10511 * 18 16 14 20 20 N 1.48566 * 104.59090 * 23.85337 * 19 18 16 21 21 C 1.48558 * 104.22157 * 320.51786 * 20 19 18 22 22 H 1.08996 * 109.47215 * 54.12799 * 1 2 3 23 23 H 1.08998 * 109.47341 * 174.13198 * 1 2 3 24 24 H 1.09002 * 109.46475 * 294.13192 * 1 2 3 25 25 H 0.97003 * 119.99668 * 354.93177 * 7 6 4 26 26 H 1.08992 * 109.47236 * 95.12385 * 13 12 2 27 27 H 1.09003 * 109.46875 * 215.12039 * 13 12 2 28 28 H 1.08996 * 109.47342 * 335.12195 * 13 12 2 29 29 H 1.08998 * 109.47152 * 58.09505 * 17 16 14 30 30 H 1.08996 * 109.46823 * 178.09630 * 17 16 14 31 31 H 1.09003 * 109.46853 * 298.09527 * 17 16 14 32 32 H 1.08998 * 110.32542 * 0.02562 * 18 16 14 33 33 H 1.09003 * 110.32615 * 122.10403 * 18 16 14 34 34 H 1.09003 * 110.41403 * 142.63033 * 19 18 16 35 35 H 1.09000 * 110.41255 * 265.07936 * 19 18 16 36 36 H 1.00894 * 111.00104 * 200.96269 * 20 19 18 37 37 H 1.09001 * 110.41326 * 280.70323 * 21 20 19 38 38 H 1.09003 * 110.41445 * 158.25966 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.5763 -1.6384 1.1340 6 6 1.7976 -0.1756 2.4795 7 7 1.8525 -0.9445 3.5450 8 14 1.4012 1.6411 2.6581 9 1 1.1930 1.9635 4.0926 10 1 2.5297 2.4482 2.1287 11 1 0.1667 1.9559 1.8952 12 7 2.0183 -0.6905 -1.1961 13 6 1.7929 -2.1295 -1.3545 14 6 2.6749 -0.0022 -2.1508 15 8 3.0045 -0.5550 -3.1788 16 6 2.9994 1.4544 -1.9411 17 6 1.7123 2.2755 -1.8401 18 6 3.8802 1.9785 -3.0940 19 6 5.1936 2.4321 -2.4213 20 7 5.2570 1.6508 -1.1593 21 6 3.8548 1.6354 -0.6687 22 1 -0.3633 0.6022 -0.8327 23 1 -0.3634 -1.0222 -0.1051 24 1 -0.3632 0.4202 0.9379 25 1 1.9852 -1.9004 3.4469 26 1 0.8930 -2.2932 -1.9472 27 1 2.6480 -2.5776 -1.8608 28 1 1.6703 -2.5882 -0.3734 29 1 1.1030 1.8964 -1.0196 30 1 1.9615 3.3203 -1.6550 31 1 1.1555 2.1946 -2.7736 32 1 4.0774 1.1823 -3.8118 33 1 3.3955 2.8207 -3.5880 34 1 6.0472 2.1972 -3.0571 35 1 5.1612 3.5001 -2.2059 36 1 5.8692 2.0932 -0.4904 37 1 3.6129 2.5787 -0.1791 38 1 3.7003 0.8006 0.0150 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063093028.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:41 Heat of formation + Delta-G solvation = -22.121489 kcal Electronic energy + Delta-G solvation = -19074.951370 eV Core-core repulsion = 16338.770852 eV Total energy + Delta-G solvation = -2736.180518 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.26529 -37.21386 -35.85279 -32.67022 -32.18693 -29.94507 -29.04414 -26.45011 -25.52700 -24.78130 -22.20967 -21.25990 -20.31796 -17.99981 -17.64826 -16.12744 -15.91685 -15.50064 -14.74522 -14.33675 -13.86728 -13.50700 -13.38636 -12.88449 -12.75456 -12.40323 -12.08812 -12.02991 -11.85792 -11.66118 -11.57352 -11.30709 -11.07865 -10.92848 -10.72389 -10.47431 -10.31247 -10.00164 -9.96037 -9.22571 -9.02989 -8.40409 -8.30160 -7.78304 -6.61372 -4.26026 3.21655 3.25749 3.32200 3.42765 3.87450 4.31834 4.53416 4.82802 4.89394 5.02816 5.20956 5.38350 5.43227 5.60085 5.82636 5.85928 5.96326 5.98502 6.06263 6.11038 6.16008 6.23890 6.32195 6.36314 6.43391 6.46518 6.53090 6.63004 6.75162 6.99017 7.00282 7.37484 7.54415 7.76436 8.19820 8.33728 8.73214 8.95216 9.41301 10.73513 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.023350 B = 0.011104 C = 0.009361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.870766 B = 2521.083178 C = 2990.444008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.219 3.781 3 H 0.058 0.942 4 C -0.617 4.617 5 H 0.067 0.933 6 C 0.044 3.956 7 N -0.891 5.891 8 Si 1.022 2.978 9 H -0.281 1.281 10 H -0.278 1.278 11 H -0.272 1.272 12 N -0.584 5.584 13 C 0.096 3.904 14 C 0.529 3.471 15 O -0.566 6.566 16 C -0.081 4.081 17 C -0.157 4.157 18 C -0.113 4.113 19 C 0.036 3.964 20 N -0.662 5.662 21 C 0.032 3.968 22 H 0.028 0.972 23 H 0.050 0.950 24 H 0.063 0.937 25 H 0.272 0.728 26 H 0.038 0.962 27 H 0.056 0.944 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.093 0.907 33 H 0.068 0.932 34 H 0.077 0.923 35 H 0.035 0.965 36 H 0.335 0.665 37 H 0.046 0.954 38 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.596 7.707 -7.824 10.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.117 3.883 3 H 0.075 0.925 4 C -0.655 4.655 5 H 0.085 0.915 6 C -0.164 4.164 7 N -0.523 5.523 8 Si 0.849 3.151 9 H -0.206 1.206 10 H -0.204 1.204 11 H -0.198 1.198 12 N -0.314 5.314 13 C -0.047 4.047 14 C 0.316 3.684 15 O -0.447 6.447 16 C -0.085 4.085 17 C -0.214 4.214 18 C -0.151 4.151 19 C -0.093 4.093 20 N -0.291 5.291 21 C -0.097 4.097 22 H 0.047 0.953 23 H 0.069 0.931 24 H 0.082 0.918 25 H 0.082 0.918 26 H 0.057 0.943 27 H 0.075 0.925 28 H 0.099 0.901 29 H 0.101 0.899 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.112 0.888 33 H 0.087 0.913 34 H 0.096 0.904 35 H 0.054 0.946 36 H 0.150 0.850 37 H 0.064 0.936 38 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 0.492 7.878 -7.479 10.873 hybrid contribution 0.082 -0.270 -0.623 0.684 sum 0.573 7.608 -8.101 11.128 Atomic orbital electron populations 1.22575 0.98854 1.00885 1.00045 1.19648 0.90732 0.94330 0.83586 0.92500 1.22137 1.41070 1.11683 0.90610 0.91504 1.25579 0.93529 1.05425 0.91876 1.70823 1.42971 1.07013 1.31482 0.84394 0.77465 0.76248 0.76969 1.20605 1.20442 1.19847 1.47855 1.54435 1.08648 1.20430 1.21425 0.99746 0.81496 1.02048 1.20101 0.77141 0.88264 0.82890 1.90551 1.55371 1.70821 1.27963 1.21345 0.96614 0.93488 0.97013 1.22315 0.96219 0.99409 1.03470 1.22408 0.93983 1.01344 0.97408 1.22916 0.98473 0.95019 0.92941 1.63747 1.07973 1.51544 1.05821 1.23464 0.87354 1.02990 0.95880 0.95314 0.93094 0.91845 0.91769 0.94327 0.92479 0.90054 0.89878 0.91894 0.92104 0.88816 0.91318 0.90430 0.94638 0.85005 0.93568 0.86318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.35 8.56 37.16 0.32 -3.03 16 2 C 0.22 4.77 0.43 -69.08 -0.03 4.74 16 3 H 0.06 1.20 1.64 -51.93 -0.09 1.11 16 4 C -0.62 -15.66 7.51 -34.44 -0.26 -15.92 16 5 H 0.07 1.87 6.98 -52.49 -0.37 1.51 16 6 C 0.04 1.15 5.24 -17.82 -0.09 1.05 16 7 N -0.89 -25.32 13.70 55.43 0.76 -24.56 16 8 Si 1.02 22.48 26.38 -169.99 -4.48 18.00 16 9 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 10 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 11 H -0.27 -5.45 5.96 56.52 0.34 -5.11 16 12 N -0.58 -12.51 2.68 -175.26 -0.47 -12.98 16 13 C 0.10 1.93 9.43 59.85 0.56 2.49 16 14 C 0.53 11.21 6.47 -10.99 -0.07 11.14 16 15 O -0.57 -13.19 14.99 5.55 0.08 -13.10 16 16 C -0.08 -1.45 0.68 -154.28 -0.10 -1.55 16 17 C -0.16 -2.45 7.88 37.16 0.29 -2.16 16 18 C -0.11 -1.78 6.23 -25.35 -0.16 -1.94 16 19 C 0.04 0.51 7.47 -2.18 -0.02 0.49 16 20 N -0.66 -11.02 7.62 -109.65 -0.84 -11.85 16 21 C 0.03 0.59 5.20 -2.18 -0.01 0.58 16 22 H 0.03 0.51 7.19 -51.93 -0.37 0.14 16 23 H 0.05 1.02 7.69 -51.93 -0.40 0.63 16 24 H 0.06 1.31 5.21 -51.93 -0.27 1.04 16 25 H 0.27 7.74 8.73 -40.82 -0.36 7.39 16 26 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 27 H 0.06 1.14 7.65 -51.93 -0.40 0.75 16 28 H 0.08 1.67 6.49 -51.93 -0.34 1.34 16 29 H 0.08 1.41 3.62 -51.93 -0.19 1.22 16 30 H 0.06 0.83 8.11 -51.93 -0.42 0.41 16 31 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.09 1.67 6.48 -51.93 -0.34 1.33 16 33 H 0.07 0.91 7.71 -51.93 -0.40 0.51 16 34 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.33 4.78 8.92 -39.29 -0.35 4.43 16 37 H 0.05 0.78 7.84 -51.93 -0.41 0.37 16 38 H 0.12 2.58 5.33 -51.93 -0.28 2.31 16 LS Contribution 282.78 15.07 4.26 4.26 Total: -1.00 -29.10 282.78 -5.77 -34.87 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: -5.52 Total: 9.47 kcal Atomic # 6 Polarization: -4.54 SS G_CDS: 0.43 Total: -4.11 kcal Atomic # 7 Polarization: -48.85 SS G_CDS: -0.55 Total: -49.39 kcal Atomic # 8 Polarization: -13.19 SS G_CDS: 0.08 Total: -13.10 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -4.48 Total: 18.00 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -29.10 -5.77 -34.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063093028.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.750 kcal (2) G-P(sol) polarization free energy of solvation -29.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds