Wall clock time and date at job start Mon Mar 30 2020 03:15:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47273 * 2 1 4 4 C 1.50706 * 109.47251 * 119.99836 * 2 1 3 5 5 H 1.07999 * 119.99861 * 114.37432 * 4 2 1 6 6 C 1.37876 * 120.00204 * 294.37626 * 4 2 1 7 7 N 1.31512 * 120.00184 * 159.18567 * 6 4 2 8 8 Si 1.86799 * 119.99765 * 339.19267 * 6 4 2 9 9 H 1.48503 * 109.46908 * 180.02562 * 8 6 4 10 10 H 1.48498 * 109.46888 * 299.99283 * 8 6 4 11 11 H 1.48491 * 109.47800 * 59.99727 * 8 6 4 12 12 N 1.46495 * 109.47296 * 240.00242 * 2 1 3 13 13 C 1.46508 * 119.99607 * 293.11200 * 12 2 1 14 14 C 1.34771 * 120.00346 * 113.11309 * 12 2 1 15 15 O 1.21284 * 119.99939 * 184.68143 * 14 12 2 16 16 C 1.50699 * 120.00144 * 4.67206 * 14 12 2 17 17 C 1.53004 * 110.28750 * 295.98904 * 16 14 12 18 18 C 1.54252 * 110.32593 * 173.85700 * 16 14 12 19 19 C 1.54378 * 105.06545 * 241.10511 * 18 16 14 20 20 N 1.48566 * 104.59090 * 23.85337 * 19 18 16 21 21 C 1.48558 * 104.22157 * 320.51786 * 20 19 18 22 22 H 1.08996 * 109.47215 * 54.12799 * 1 2 3 23 23 H 1.08998 * 109.47341 * 174.13198 * 1 2 3 24 24 H 1.09002 * 109.46475 * 294.13192 * 1 2 3 25 25 H 0.97003 * 119.99668 * 354.93177 * 7 6 4 26 26 H 1.08992 * 109.47236 * 95.12385 * 13 12 2 27 27 H 1.09003 * 109.46875 * 215.12039 * 13 12 2 28 28 H 1.08996 * 109.47342 * 335.12195 * 13 12 2 29 29 H 1.08998 * 109.47152 * 58.09505 * 17 16 14 30 30 H 1.08996 * 109.46823 * 178.09630 * 17 16 14 31 31 H 1.09003 * 109.46853 * 298.09527 * 17 16 14 32 32 H 1.08998 * 110.32542 * 0.02562 * 18 16 14 33 33 H 1.09003 * 110.32615 * 122.10403 * 18 16 14 34 34 H 1.09003 * 110.41403 * 142.63033 * 19 18 16 35 35 H 1.09000 * 110.41255 * 265.07936 * 19 18 16 36 36 H 1.00894 * 111.00104 * 200.96269 * 20 19 18 37 37 H 1.09001 * 110.41326 * 280.70323 * 21 20 19 38 38 H 1.09003 * 110.41445 * 158.25966 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.5763 -1.6384 1.1340 6 6 1.7976 -0.1756 2.4795 7 7 1.8525 -0.9445 3.5450 8 14 1.4012 1.6411 2.6581 9 1 1.1930 1.9635 4.0926 10 1 2.5297 2.4482 2.1287 11 1 0.1667 1.9559 1.8952 12 7 2.0183 -0.6905 -1.1961 13 6 1.7929 -2.1295 -1.3545 14 6 2.6749 -0.0022 -2.1508 15 8 3.0045 -0.5550 -3.1788 16 6 2.9994 1.4544 -1.9411 17 6 1.7123 2.2755 -1.8401 18 6 3.8802 1.9785 -3.0940 19 6 5.1936 2.4321 -2.4213 20 7 5.2570 1.6508 -1.1593 21 6 3.8548 1.6354 -0.6687 22 1 -0.3633 0.6022 -0.8327 23 1 -0.3634 -1.0222 -0.1051 24 1 -0.3632 0.4202 0.9379 25 1 1.9852 -1.9004 3.4469 26 1 0.8930 -2.2932 -1.9472 27 1 2.6480 -2.5776 -1.8608 28 1 1.6703 -2.5882 -0.3734 29 1 1.1030 1.8964 -1.0196 30 1 1.9615 3.3203 -1.6550 31 1 1.1555 2.1946 -2.7736 32 1 4.0774 1.1823 -3.8118 33 1 3.3955 2.8207 -3.5880 34 1 6.0472 2.1972 -3.0571 35 1 5.1612 3.5001 -2.2059 36 1 5.8692 2.0932 -0.4904 37 1 3.6129 2.5787 -0.1791 38 1 3.7003 0.8006 0.0150 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063093028.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:41 Heat of formation + Delta-G solvation = -43.999450 kcal Electronic energy + Delta-G solvation = -19075.900070 eV Core-core repulsion = 16338.770852 eV Total energy + Delta-G solvation = -2737.129217 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.78327 -38.63617 -37.60745 -34.63581 -33.49036 -31.69490 -30.30468 -28.00100 -27.12226 -26.37346 -23.82524 -22.61117 -21.85212 -19.59949 -19.53613 -17.60966 -17.28480 -17.08442 -16.36151 -15.92377 -15.47281 -14.99524 -14.86893 -14.39829 -14.26692 -13.87737 -13.70382 -13.52718 -13.38501 -13.18233 -12.93784 -12.81494 -12.65459 -12.39616 -12.20279 -11.90473 -11.69769 -11.63877 -11.52769 -11.12820 -10.69559 -10.35314 -9.56192 -9.50056 -8.69146 -6.35144 1.48325 1.53947 1.69296 1.71010 2.27510 2.51577 3.03356 3.33607 3.47841 3.56083 3.89937 4.11703 4.30124 4.38189 4.42239 4.44370 4.52352 4.64154 4.67108 4.73960 4.77703 4.83521 4.85309 4.91302 4.95306 5.03753 5.10100 5.18596 5.28349 5.36535 5.68653 5.77764 5.88979 6.05784 6.42551 6.47731 6.76384 7.26177 7.42307 8.63025 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.023350 B = 0.011104 C = 0.009361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.870766 B = 2521.083178 C = 2990.444008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.225 3.775 3 H 0.077 0.923 4 C -0.611 4.611 5 H 0.023 0.977 6 C -0.003 4.003 7 N -0.928 5.928 8 Si 1.052 2.948 9 H -0.292 1.292 10 H -0.249 1.249 11 H -0.234 1.234 12 N -0.593 5.593 13 C 0.097 3.903 14 C 0.519 3.481 15 O -0.594 6.594 16 C -0.083 4.083 17 C -0.156 4.156 18 C -0.111 4.111 19 C 0.040 3.960 20 N -0.685 5.685 21 C 0.033 3.967 22 H 0.058 0.942 23 H 0.042 0.958 24 H 0.061 0.939 25 H 0.254 0.746 26 H 0.058 0.942 27 H 0.050 0.950 28 H 0.066 0.934 29 H 0.069 0.931 30 H 0.096 0.904 31 H 0.072 0.928 32 H 0.067 0.933 33 H 0.101 0.899 34 H 0.085 0.915 35 H 0.067 0.933 36 H 0.347 0.653 37 H 0.068 0.932 38 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.045 11.152 -9.241 14.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.122 3.878 3 H 0.095 0.905 4 C -0.649 4.649 5 H 0.041 0.959 6 C -0.203 4.203 7 N -0.563 5.563 8 Si 0.872 3.128 9 H -0.219 1.219 10 H -0.173 1.173 11 H -0.157 1.157 12 N -0.322 5.322 13 C -0.046 4.046 14 C 0.309 3.691 15 O -0.477 6.477 16 C -0.087 4.087 17 C -0.213 4.213 18 C -0.149 4.149 19 C -0.089 4.089 20 N -0.315 5.315 21 C -0.096 4.096 22 H 0.077 0.923 23 H 0.061 0.939 24 H 0.080 0.920 25 H 0.063 0.937 26 H 0.076 0.924 27 H 0.069 0.931 28 H 0.085 0.915 29 H 0.088 0.912 30 H 0.115 0.885 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.119 0.881 34 H 0.103 0.897 35 H 0.085 0.915 36 H 0.163 0.837 37 H 0.086 0.914 38 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -0.053 11.318 -8.925 14.414 hybrid contribution 0.342 -1.479 -0.234 1.536 sum 0.290 9.839 -9.159 13.446 Atomic orbital electron populations 1.22496 0.97299 1.01157 1.01170 1.19585 0.91695 0.94610 0.81875 0.90547 1.22206 1.39933 1.10052 0.92661 0.95882 1.26967 0.92858 1.09026 0.91490 1.70964 1.46373 1.06218 1.32727 0.84087 0.80059 0.71600 0.77103 1.21859 1.17330 1.15722 1.47981 1.54738 1.08925 1.20551 1.21388 1.00336 0.81480 1.01380 1.20853 0.76177 0.89920 0.82200 1.90533 1.56189 1.71904 1.29036 1.21472 0.98270 0.91217 0.97750 1.22336 0.94642 1.00712 1.03593 1.22431 0.94660 1.01552 0.96284 1.22976 0.97965 0.96394 0.91533 1.63667 1.07394 1.53298 1.07180 1.23308 0.88602 1.02251 0.95480 0.92283 0.93850 0.92044 0.93662 0.92382 0.93149 0.91549 0.91220 0.88532 0.90942 0.91479 0.88107 0.89669 0.91464 0.83687 0.91432 0.90440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.25 8.56 71.98 0.62 -5.63 16 2 C 0.22 9.52 0.43 44.25 0.02 9.54 16 3 H 0.08 3.01 1.64 -2.39 0.00 3.01 16 4 C -0.61 -31.69 7.51 25.60 0.19 -31.50 16 5 H 0.02 1.37 6.98 -2.91 -0.02 1.35 16 6 C 0.00 -0.16 5.24 84.65 0.44 0.28 16 7 N -0.93 -54.64 13.70 21.45 0.29 -54.34 16 8 Si 1.05 43.28 26.38 68.60 1.81 45.09 16 9 H -0.29 -12.63 7.11 99.48 0.71 -11.92 16 10 H -0.25 -9.03 7.11 99.48 0.71 -8.32 16 11 H -0.23 -8.16 5.96 99.48 0.59 -7.56 16 12 N -0.59 -25.22 2.68 -826.79 -2.22 -27.44 16 13 C 0.10 4.00 9.43 127.77 1.20 5.21 16 14 C 0.52 21.49 6.47 87.66 0.57 22.06 16 15 O -0.59 -27.50 14.99 -3.04 -0.05 -27.55 16 16 C -0.08 -2.74 0.68 -52.03 -0.04 -2.77 16 17 C -0.16 -4.11 7.88 71.98 0.57 -3.55 16 18 C -0.11 -3.12 6.23 31.49 0.20 -2.92 16 19 C 0.04 0.99 7.47 86.45 0.65 1.63 16 20 N -0.69 -21.18 7.62 -500.83 -3.82 -25.00 16 21 C 0.03 1.12 5.20 86.45 0.45 1.57 16 22 H 0.06 1.91 7.19 -2.39 -0.02 1.89 16 23 H 0.04 1.69 7.69 -2.39 -0.02 1.67 16 24 H 0.06 2.37 5.21 -2.39 -0.01 2.36 16 25 H 0.25 15.36 8.73 -92.71 -0.81 14.55 16 26 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 27 H 0.05 2.09 7.65 -2.39 -0.02 2.08 16 28 H 0.07 2.88 6.49 -2.39 -0.02 2.86 16 29 H 0.07 2.03 3.62 -2.39 -0.01 2.02 16 30 H 0.10 1.93 8.11 -2.39 -0.02 1.91 16 31 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.07 2.26 6.48 -2.39 -0.02 2.25 16 33 H 0.10 2.16 7.71 -2.39 -0.02 2.14 16 34 H 0.08 1.96 8.14 -2.39 -0.02 1.95 16 35 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.35 9.04 8.92 -89.70 -0.80 8.24 16 37 H 0.07 1.98 7.84 -2.39 -0.02 1.96 16 38 H 0.08 3.30 5.33 -2.39 -0.01 3.29 16 Total: -1.00 -65.52 282.78 1.01 -64.52 By element: Atomic # 1 Polarization: 30.67 SS G_CDS: 0.12 Total: 30.79 kcal Atomic # 6 Polarization: -10.94 SS G_CDS: 4.87 Total: -6.07 kcal Atomic # 7 Polarization: -101.04 SS G_CDS: -5.74 Total: -106.79 kcal Atomic # 8 Polarization: -27.50 SS G_CDS: -0.05 Total: -27.55 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 1.81 Total: 45.09 kcal Total: -65.52 1.01 -64.52 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063093028.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.517 kcal (2) G-P(sol) polarization free energy of solvation -65.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds