Wall clock time and date at job start Mon Mar 30 2020 03:15:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09009 * 109.46707 * 2 1 4 4 C 1.50696 * 109.47599 * 239.99775 * 2 1 3 5 5 H 1.08000 * 119.99833 * 264.99681 * 4 2 1 6 6 C 1.37876 * 119.99904 * 84.99423 * 4 2 1 7 7 N 1.31510 * 120.00314 * 350.48297 * 6 4 2 8 8 Si 1.86807 * 119.99532 * 170.48091 * 6 4 2 9 9 H 1.48494 * 109.47300 * 60.00141 * 8 6 4 10 10 H 1.48502 * 109.47174 * 299.99817 * 8 6 4 11 11 H 1.48498 * 109.46896 * 180.02562 * 8 6 4 12 12 N 1.46502 * 109.46925 * 119.99184 * 2 1 3 13 13 C 1.46498 * 119.99821 * 54.47930 * 12 2 1 14 14 C 1.34778 * 119.99730 * 234.47743 * 12 2 1 15 15 O 1.21281 * 119.99622 * 184.82770 * 14 12 2 16 16 C 1.50696 * 120.00366 * 4.83074 * 14 12 2 17 17 C 1.53000 * 110.28859 * 294.77405 * 16 14 12 18 18 C 1.54262 * 110.32516 * 172.64889 * 16 14 12 19 19 C 1.54378 * 105.06070 * 241.10573 * 18 16 14 20 20 N 1.48560 * 104.59458 * 23.84986 * 19 18 16 21 21 C 1.48560 * 104.22376 * 320.51775 * 20 19 18 22 22 H 1.09003 * 109.47236 * 53.31300 * 1 2 3 23 23 H 1.09005 * 109.46720 * 173.30917 * 1 2 3 24 24 H 1.08999 * 109.47466 * 293.30442 * 1 2 3 25 25 H 0.96999 * 119.99899 * 3.32297 * 7 6 4 26 26 H 1.09000 * 109.46608 * 93.23677 * 13 12 2 27 27 H 1.08996 * 109.47257 * 213.23017 * 13 12 2 28 28 H 1.08999 * 109.47046 * 333.23718 * 13 12 2 29 29 H 1.09003 * 109.46719 * 51.66819 * 17 16 14 30 30 H 1.08997 * 109.47069 * 171.66647 * 17 16 14 31 31 H 1.08994 * 109.47294 * 291.67196 * 17 16 14 32 32 H 1.08999 * 110.31946 * 359.97438 * 18 16 14 33 33 H 1.08991 * 110.32389 * 122.10525 * 18 16 14 34 34 H 1.08996 * 110.41292 * 142.62843 * 19 18 16 35 35 H 1.09007 * 110.41055 * 265.07622 * 19 18 16 36 36 H 1.00904 * 110.99670 * 200.95882 * 20 19 18 37 37 H 1.08997 * 110.41408 * 280.70509 * 21 20 19 38 38 H 1.08998 * 110.41345 * 158.26034 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0325 -0.7104 -1.2304 5 1 2.2894 -1.7583 -1.1818 6 6 2.1641 -0.0227 -2.4181 7 7 1.6795 1.1948 -2.5302 8 14 3.0308 -0.8202 -3.8680 9 1 2.3140 -2.0631 -4.2507 10 1 4.4278 -1.1514 -3.4885 11 1 3.0404 0.1202 -5.0172 12 7 2.0183 -0.6905 1.1963 13 6 1.5674 -2.0528 1.4910 14 6 2.8823 -0.0722 2.0256 15 8 3.3543 -0.6733 2.9674 16 6 3.2618 1.3658 1.7829 17 6 4.0324 1.4964 0.4676 18 6 4.1089 1.9017 2.9555 19 6 3.2886 3.0709 3.5414 20 7 1.8868 2.7808 3.1442 21 6 2.0011 2.2564 1.7589 22 1 -0.3634 0.6140 -0.8241 23 1 -0.3633 -1.0207 -0.1197 24 1 -0.3634 0.4065 0.9438 25 1 1.2723 1.6272 -1.7633 26 1 2.2757 -2.7682 1.0730 27 1 1.5070 -2.1900 2.5706 28 1 0.5844 -2.2139 1.0486 29 1 3.4696 1.0154 -0.3324 30 1 4.1710 2.5513 0.2309 31 1 5.0054 1.0154 0.5673 32 1 4.2497 1.1246 3.7068 33 1 5.0735 2.2577 2.5940 34 1 3.3793 3.0923 4.6274 35 1 3.6169 4.0179 3.1129 36 1 1.3235 3.6176 3.1688 37 1 2.1279 3.0758 1.0515 38 1 1.1224 1.6645 1.5028 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063093030.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:44 Heat of formation + Delta-G solvation = -28.456749 kcal Electronic energy + Delta-G solvation = -19049.185550 eV Core-core repulsion = 16312.730314 eV Total energy + Delta-G solvation = -2736.455235 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.20224 -37.19401 -35.88489 -32.81570 -32.02310 -29.36533 -28.96794 -26.36428 -25.55992 -24.72397 -22.29097 -21.27390 -20.43752 -18.20256 -17.24994 -16.04869 -15.82294 -15.33757 -14.62196 -14.21489 -13.85379 -13.52751 -13.20747 -12.91410 -12.75221 -12.45425 -12.02742 -11.83149 -11.60525 -11.47921 -11.42623 -11.19098 -10.96550 -10.89132 -10.81795 -10.52843 -10.25605 -10.18986 -9.83399 -9.17847 -8.77702 -8.55440 -8.40431 -7.58277 -6.56987 -4.30246 3.32989 3.36532 3.42670 3.54245 3.93256 4.37951 4.47719 4.90147 4.92829 5.14195 5.29385 5.40276 5.57041 5.75197 5.87043 5.92226 6.05088 6.07958 6.10663 6.18879 6.20764 6.33245 6.40965 6.43160 6.44776 6.54931 6.58146 6.80843 6.91561 7.00054 7.06839 7.44307 7.53250 7.88891 8.12282 8.46673 8.65347 9.00780 9.38784 10.79114 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.026133 B = 0.009302 C = 0.008607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.178613 B = 3009.377145 C = 3252.523305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.222 3.778 3 H 0.074 0.926 4 C -0.605 4.605 5 H 0.056 0.944 6 C 0.028 3.972 7 N -0.900 5.900 8 Si 1.064 2.936 9 H -0.287 1.287 10 H -0.286 1.286 11 H -0.281 1.281 12 N -0.588 5.588 13 C 0.097 3.903 14 C 0.531 3.469 15 O -0.570 6.570 16 C -0.076 4.076 17 C -0.160 4.160 18 C -0.115 4.115 19 C 0.037 3.963 20 N -0.665 5.665 21 C 0.039 3.961 22 H 0.059 0.941 23 H 0.047 0.953 24 H 0.025 0.975 25 H 0.269 0.731 26 H 0.045 0.955 27 H 0.056 0.944 28 H 0.067 0.933 29 H 0.109 0.891 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.092 0.908 33 H 0.069 0.931 34 H 0.078 0.922 35 H 0.037 0.963 36 H 0.333 0.667 37 H 0.050 0.950 38 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.886 3.255 5.794 6.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.121 3.879 3 H 0.091 0.909 4 C -0.644 4.644 5 H 0.074 0.926 6 C -0.177 4.177 7 N -0.536 5.536 8 Si 0.892 3.108 9 H -0.213 1.213 10 H -0.213 1.213 11 H -0.206 1.206 12 N -0.318 5.318 13 C -0.046 4.046 14 C 0.319 3.681 15 O -0.451 6.451 16 C -0.080 4.080 17 C -0.218 4.218 18 C -0.153 4.153 19 C -0.092 4.092 20 N -0.293 5.293 21 C -0.090 4.090 22 H 0.078 0.922 23 H 0.066 0.934 24 H 0.044 0.956 25 H 0.080 0.920 26 H 0.063 0.937 27 H 0.075 0.925 28 H 0.085 0.915 29 H 0.128 0.872 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.111 0.889 33 H 0.088 0.912 34 H 0.096 0.904 35 H 0.055 0.945 36 H 0.148 0.852 37 H 0.069 0.931 38 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 1.426 2.521 5.027 5.801 hybrid contribution -0.285 0.525 0.896 1.076 sum 1.142 3.046 5.922 6.757 Atomic orbital electron populations 1.22299 0.99088 1.01014 0.98936 1.19598 0.90674 0.94920 0.82681 0.90896 1.22132 1.48403 0.98525 0.95297 0.92603 1.25765 0.95336 0.95984 1.00663 1.70879 1.35339 1.14410 1.32948 0.83593 0.76276 0.75386 0.75575 1.21335 1.21268 1.20638 1.48108 1.43969 1.14947 1.24779 1.21355 0.99423 0.83925 0.99932 1.20094 0.78489 0.88096 0.81448 1.90538 1.55082 1.67377 1.32142 1.21301 0.96148 0.93069 0.97469 1.22323 1.00669 1.02174 0.96590 1.22434 0.97227 0.98065 0.97566 1.22908 0.89084 0.96714 1.00526 1.63759 1.10365 1.33191 1.22033 1.23336 0.98440 0.97707 0.89531 0.92181 0.93411 0.95596 0.91970 0.93667 0.92525 0.91480 0.87215 0.92578 0.92645 0.88914 0.91209 0.90410 0.94475 0.85238 0.93150 0.88545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.24 8.37 37.16 0.31 -2.93 16 2 C 0.22 4.99 0.41 -69.08 -0.03 4.96 16 3 H 0.07 1.64 2.14 -51.92 -0.11 1.53 16 4 C -0.60 -15.20 7.45 -34.44 -0.26 -15.46 16 5 H 0.06 1.46 7.60 -52.49 -0.40 1.06 16 6 C 0.03 0.72 4.98 -17.82 -0.09 0.63 16 7 N -0.90 -23.84 13.62 55.43 0.75 -23.08 16 8 Si 1.06 23.37 29.91 -169.99 -5.09 18.29 16 9 H -0.29 -6.12 7.11 56.52 0.40 -5.72 16 10 H -0.29 -6.14 7.11 56.52 0.40 -5.74 16 11 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 12 N -0.59 -12.88 2.68 -175.26 -0.47 -13.35 16 13 C 0.10 1.93 9.68 59.85 0.58 2.51 16 14 C 0.53 11.74 6.47 -10.99 -0.07 11.67 16 15 O -0.57 -13.74 14.97 5.56 0.08 -13.66 16 16 C -0.08 -1.45 0.68 -154.28 -0.10 -1.56 16 17 C -0.16 -3.11 7.90 37.16 0.29 -2.81 16 18 C -0.11 -1.92 6.23 -25.35 -0.16 -2.08 16 19 C 0.04 0.53 7.47 -2.18 -0.02 0.51 16 20 N -0.67 -10.38 7.62 -109.66 -0.84 -11.22 16 21 C 0.04 0.68 5.18 -2.18 -0.01 0.67 16 22 H 0.06 1.30 7.34 -51.93 -0.38 0.92 16 23 H 0.05 0.98 6.81 -51.93 -0.35 0.63 16 24 H 0.03 0.49 7.25 -51.93 -0.38 0.12 16 25 H 0.27 6.97 6.06 -40.82 -0.25 6.72 16 26 H 0.04 0.90 8.14 -51.93 -0.42 0.47 16 27 H 0.06 1.09 7.59 -51.93 -0.39 0.69 16 28 H 0.07 1.24 6.29 -51.93 -0.33 0.91 16 29 H 0.11 2.47 3.96 -51.93 -0.21 2.27 16 30 H 0.06 0.97 7.95 -51.93 -0.41 0.56 16 31 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.09 1.73 6.49 -51.93 -0.34 1.39 16 33 H 0.07 1.04 7.71 -51.93 -0.40 0.64 16 34 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 35 H 0.04 0.47 8.14 -51.92 -0.42 0.04 16 36 H 0.33 4.29 8.92 -39.29 -0.35 3.94 16 37 H 0.05 0.84 7.74 -51.93 -0.40 0.44 16 38 H 0.10 1.85 4.58 -51.93 -0.24 1.61 16 LS Contribution 285.94 15.07 4.31 4.31 Total: -1.00 -28.50 285.94 -6.22 -34.72 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: -5.42 Total: 7.87 kcal Atomic # 6 Polarization: -4.32 SS G_CDS: 0.45 Total: -3.87 kcal Atomic # 7 Polarization: -47.10 SS G_CDS: -0.55 Total: -47.65 kcal Atomic # 8 Polarization: -13.74 SS G_CDS: 0.08 Total: -13.66 kcal Atomic # 14 Polarization: 23.37 SS G_CDS: -5.09 Total: 18.29 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -28.50 -6.22 -34.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063093030.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.264 kcal (2) G-P(sol) polarization free energy of solvation -28.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds