Wall clock time and date at job start Mon Mar 30 2020 03:15:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09010 * 109.46983 * 2 1 4 4 C 1.50698 * 109.47418 * 120.00232 * 2 1 3 5 5 H 1.07997 * 119.99775 * 120.00049 * 4 2 1 6 6 C 1.37874 * 119.99884 * 300.00372 * 4 2 1 7 7 N 1.31513 * 120.00388 * 359.97438 * 6 4 2 8 8 Si 1.86806 * 119.99679 * 180.02562 * 6 4 2 9 9 H 1.48492 * 109.47492 * 59.99301 * 8 6 4 10 10 H 1.48502 * 109.46754 * 180.02562 * 8 6 4 11 11 H 1.48505 * 109.46690 * 299.99364 * 8 6 4 12 12 N 1.46501 * 109.46921 * 240.00525 * 2 1 3 13 13 C 1.46497 * 120.00142 * 295.23400 * 12 2 1 14 14 C 1.34784 * 119.99923 * 115.23547 * 12 2 1 15 15 O 1.21276 * 119.99582 * 185.07822 * 14 12 2 16 16 C 1.50700 * 119.99986 * 5.08482 * 14 12 2 17 17 C 1.52993 * 110.27600 * 63.17156 * 16 14 12 18 18 C 1.54593 * 110.30712 * 185.26568 * 16 14 12 19 19 C 1.55096 * 102.84897 * 97.11594 * 18 16 14 20 20 N 1.48536 * 103.28660 * 37.30123 * 19 18 16 21 21 C 1.47904 * 105.81974 * 320.85426 * 20 19 18 22 22 H 1.08999 * 109.47101 * 179.97438 * 1 2 3 23 23 H 1.09005 * 109.46889 * 299.99480 * 1 2 3 24 24 H 1.09002 * 109.47173 * 59.99044 * 1 2 3 25 25 H 0.97000 * 120.00248 * 180.02562 * 7 6 4 26 26 H 1.08998 * 109.47154 * 274.91761 * 13 12 2 27 27 H 1.09001 * 109.46530 * 34.92008 * 13 12 2 28 28 H 1.08998 * 109.46800 * 154.91336 * 13 12 2 29 29 H 1.09003 * 109.47297 * 55.79512 * 17 16 14 30 30 H 1.08995 * 109.47333 * 295.79548 * 17 16 14 31 31 H 1.09003 * 109.47025 * 175.79772 * 17 16 14 32 32 H 1.09005 * 110.72323 * 215.41518 * 18 16 14 33 33 H 1.09001 * 110.72610 * 338.69431 * 18 16 14 34 34 H 1.09007 * 110.59660 * 278.87663 * 19 18 16 35 35 H 1.09000 * 110.68944 * 155.77917 * 19 18 16 36 36 H 1.00901 * 111.00289 * 200.33463 * 20 19 18 37 37 H 1.08999 * 109.91268 * 265.97347 * 21 20 19 38 38 H 1.08995 * 109.91800 * 144.67902 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1312 6 6 1.6993 -0.2395 2.4827 7 7 0.9435 0.8300 2.6035 8 14 2.3227 -1.1198 4.0078 9 1 3.8076 -1.1192 4.0075 10 1 1.8270 -0.4202 5.2204 11 1 1.8282 -2.5201 4.0079 12 7 2.0183 -0.6905 -1.1963 13 6 1.7525 -2.1198 -1.3768 14 6 2.7121 -0.0108 -2.1307 15 8 3.0366 -0.5587 -3.1628 16 6 3.0846 1.4300 -1.8929 17 6 4.0210 1.5436 -0.6884 18 6 3.7553 2.0256 -3.1521 19 6 2.5812 2.7544 -3.8562 20 7 1.7992 3.3146 -2.7243 21 6 1.8197 2.2791 -1.6685 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3633 0.5140 -0.8899 25 1 0.7095 1.1616 3.4845 26 1 2.5166 -2.6997 -0.8592 27 1 0.7723 -2.3617 -0.9660 28 1 1.7707 -2.3613 -2.4395 29 1 4.8932 0.9088 -0.8449 30 1 3.4958 1.2238 0.2116 31 1 4.3412 2.5792 -0.5735 32 1 4.5371 2.7327 -2.8747 33 1 4.1563 1.2348 -3.7861 34 1 1.9787 2.0480 -4.4274 35 1 2.9531 3.5522 -4.4990 36 1 0.8536 3.5244 -3.0069 37 1 0.9322 1.6511 -1.7471 38 1 1.8584 2.7506 -0.6866 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063093033.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:46 Heat of formation + Delta-G solvation = -44.651944 kcal Electronic energy + Delta-G solvation = -18941.672036 eV Core-core repulsion = 16204.514524 eV Total energy + Delta-G solvation = -2737.157512 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.75928 -38.56789 -37.47605 -34.54566 -33.38499 -31.11531 -30.23316 -27.97992 -27.38749 -26.46911 -23.78614 -22.55588 -22.04857 -19.50335 -18.53520 -17.94539 -17.17058 -16.67702 -16.28947 -16.05017 -15.64089 -14.83878 -14.73429 -14.42915 -14.35442 -13.81070 -13.43920 -13.33385 -13.08103 -13.02246 -12.81962 -12.74609 -12.68921 -12.51412 -12.19317 -12.08186 -11.97513 -11.81313 -11.60403 -11.10047 -10.64052 -10.44519 -9.53686 -9.36654 -8.12143 -6.25019 1.44400 1.46803 1.52374 1.67707 2.29560 2.47606 3.16064 3.30468 3.53214 3.69050 3.77207 4.10496 4.30343 4.47071 4.51366 4.58718 4.63748 4.70503 4.79738 4.87416 4.92236 4.93483 4.96526 5.02559 5.06301 5.11988 5.18122 5.34462 5.44296 5.58146 5.69091 5.81326 5.96737 6.22346 6.38029 6.67351 6.84755 7.27214 7.46765 8.90937 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.028711 B = 0.008675 C = 0.008027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.996114 B = 3226.888560 C = 3487.364047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.244 3.756 3 H 0.074 0.926 4 C -0.539 4.539 5 H 0.050 0.950 6 C 0.033 3.967 7 N -0.904 5.904 8 Si 0.947 3.053 9 H -0.276 1.276 10 H -0.283 1.283 11 H -0.277 1.277 12 N -0.595 5.595 13 C 0.094 3.906 14 C 0.512 3.488 15 O -0.595 6.595 16 C -0.086 4.086 17 C -0.138 4.138 18 C -0.104 4.104 19 C 0.042 3.958 20 N -0.668 5.668 21 C 0.058 3.942 22 H 0.030 0.970 23 H 0.077 0.923 24 H 0.024 0.976 25 H 0.266 0.734 26 H 0.046 0.954 27 H 0.071 0.929 28 H 0.065 0.935 29 H 0.052 0.948 30 H 0.069 0.931 31 H 0.081 0.919 32 H 0.094 0.906 33 H 0.076 0.924 34 H 0.031 0.969 35 H 0.107 0.893 36 H 0.345 0.655 37 H 0.037 0.963 38 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.398 3.180 -6.563 7.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.143 3.857 3 H 0.092 0.908 4 C -0.578 4.578 5 H 0.068 0.932 6 C -0.169 4.169 7 N -0.542 5.542 8 Si 0.774 3.226 9 H -0.202 1.202 10 H -0.208 1.208 11 H -0.202 1.202 12 N -0.324 5.324 13 C -0.049 4.049 14 C 0.300 3.700 15 O -0.478 6.478 16 C -0.090 4.090 17 C -0.196 4.196 18 C -0.142 4.142 19 C -0.087 4.087 20 N -0.298 5.298 21 C -0.071 4.071 22 H 0.050 0.950 23 H 0.096 0.904 24 H 0.043 0.957 25 H 0.075 0.925 26 H 0.065 0.935 27 H 0.090 0.910 28 H 0.084 0.916 29 H 0.071 0.929 30 H 0.088 0.912 31 H 0.100 0.900 32 H 0.112 0.888 33 H 0.094 0.906 34 H 0.050 0.950 35 H 0.125 0.875 36 H 0.162 0.838 37 H 0.055 0.945 38 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 1.962 3.433 -6.632 7.721 hybrid contribution -0.562 -1.504 0.794 1.791 sum 1.400 1.929 -5.838 6.306 Atomic orbital electron populations 1.22046 0.98128 0.99610 1.00392 1.19341 0.91306 0.94480 0.80532 0.90832 1.21425 1.31965 1.13176 0.91202 0.93182 1.25406 0.94981 0.95528 1.00939 1.69914 1.36584 1.23199 1.24530 0.85779 0.78651 0.78772 0.79420 1.20190 1.20824 1.20220 1.48258 1.52444 1.10089 1.21605 1.21422 1.01231 0.81303 1.00943 1.20875 0.77221 0.89409 0.82457 1.90531 1.57468 1.71615 1.28188 1.21519 0.97568 0.90723 0.99154 1.21995 0.98308 1.02882 0.96372 1.22571 0.98134 0.99482 0.94060 1.23087 0.94472 0.97910 0.93258 1.63154 1.19005 1.39072 1.08540 1.22809 0.95048 0.92129 0.97115 0.95046 0.90415 0.95677 0.92460 0.93493 0.91027 0.91639 0.92900 0.91219 0.90022 0.88782 0.90576 0.95035 0.87519 0.83829 0.94455 0.89923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.29 8.80 71.98 0.63 -5.66 16 2 C 0.24 10.98 0.95 44.24 0.04 11.02 16 3 H 0.07 3.36 2.60 -2.38 -0.01 3.36 16 4 C -0.54 -26.71 7.79 25.60 0.20 -26.51 16 5 H 0.05 2.54 7.24 -2.91 -0.02 2.52 16 6 C 0.03 1.62 5.30 84.65 0.45 2.07 16 7 N -0.90 -46.10 11.32 21.45 0.24 -45.86 16 8 Si 0.95 40.49 29.54 68.60 2.03 42.51 16 9 H -0.28 -11.76 7.11 99.48 0.71 -11.06 16 10 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 11 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 12 N -0.59 -25.26 2.74 -826.79 -2.26 -27.52 16 13 C 0.09 3.65 9.65 127.77 1.23 4.88 16 14 C 0.51 21.30 6.32 87.66 0.55 21.85 16 15 O -0.59 -26.77 14.88 -3.02 -0.04 -26.82 16 16 C -0.09 -3.07 0.62 -52.05 -0.03 -3.10 16 17 C -0.14 -4.91 7.96 71.98 0.57 -4.34 16 18 C -0.10 -3.17 6.03 31.85 0.19 -2.98 16 19 C 0.04 1.12 7.55 86.70 0.65 1.78 16 20 N -0.67 -19.06 7.51 -501.89 -3.77 -22.83 16 21 C 0.06 2.01 5.10 86.45 0.44 2.45 16 22 H 0.03 1.34 6.86 -2.39 -0.02 1.32 16 23 H 0.08 3.73 6.07 -2.38 -0.01 3.72 16 24 H 0.02 0.99 6.71 -2.39 -0.02 0.98 16 25 H 0.27 13.08 8.31 -92.71 -0.77 12.31 16 26 H 0.05 1.80 7.84 -2.39 -0.02 1.78 16 27 H 0.07 2.65 6.69 -2.39 -0.02 2.63 16 28 H 0.06 2.45 7.22 -2.39 -0.02 2.43 16 29 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.07 2.91 5.04 -2.39 -0.01 2.90 16 31 H 0.08 2.52 8.07 -2.39 -0.02 2.50 16 32 H 0.09 2.50 7.81 -2.38 -0.02 2.48 16 33 H 0.08 2.51 6.78 -2.39 -0.02 2.49 16 34 H 0.03 0.90 8.14 -2.38 -0.02 0.89 16 35 H 0.11 2.30 8.14 -2.39 -0.02 2.28 16 36 H 0.35 8.59 8.92 -89.69 -0.80 7.79 16 37 H 0.04 1.39 5.14 -2.39 -0.01 1.37 16 38 H 0.08 3.06 7.00 -2.39 -0.02 3.04 16 Total: -1.00 -55.13 286.11 1.40 -53.73 By element: Atomic # 1 Polarization: 25.05 SS G_CDS: 0.27 Total: 25.32 kcal Atomic # 6 Polarization: -3.47 SS G_CDS: 4.94 Total: 1.47 kcal Atomic # 7 Polarization: -90.42 SS G_CDS: -5.79 Total: -96.21 kcal Atomic # 8 Polarization: -26.77 SS G_CDS: -0.04 Total: -26.82 kcal Atomic # 14 Polarization: 40.49 SS G_CDS: 2.03 Total: 42.51 kcal Total: -55.13 1.40 -53.73 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063093033.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.076 kcal (2) G-P(sol) polarization free energy of solvation -55.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds