Wall clock time and date at job start Mon Mar 30 2020 03:15:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08998 * 109.46956 * 2 1 4 4 C 1.50701 * 109.46975 * 239.99787 * 2 1 3 5 5 H 1.08000 * 120.00257 * 239.99572 * 4 2 1 6 6 C 1.37880 * 119.99904 * 60.00282 * 4 2 1 7 7 N 1.31513 * 120.00048 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 119.99982 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47046 * 59.99935 * 8 6 4 10 10 H 1.48496 * 109.47314 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.47440 * 300.00101 * 8 6 4 12 12 N 1.46497 * 109.47245 * 119.99966 * 2 1 3 13 13 C 1.46506 * 119.99925 * 58.48198 * 12 2 1 14 14 C 1.34770 * 119.99879 * 238.48480 * 12 2 1 15 15 O 1.21290 * 120.00200 * 185.18290 * 14 12 2 16 16 C 1.50695 * 120.00291 * 5.18545 * 14 12 2 17 17 C 1.53006 * 110.27472 * 62.07760 * 16 14 12 18 18 C 1.54597 * 110.39556 * 184.22491 * 16 14 12 19 19 C 1.54934 * 102.92135 * 97.00095 * 18 16 14 20 20 N 1.48540 * 103.22835 * 37.41601 * 19 18 16 21 21 C 1.47900 * 105.81634 * 320.79336 * 20 19 18 22 22 H 1.09004 * 109.46688 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.47116 * 300.00130 * 1 2 3 24 24 H 1.09003 * 109.46848 * 60.00594 * 1 2 3 25 25 H 0.96999 * 119.99740 * 180.02562 * 7 6 4 26 26 H 1.09000 * 109.47074 * 264.88265 * 13 12 2 27 27 H 1.08994 * 109.46860 * 24.88475 * 13 12 2 28 28 H 1.09005 * 109.46760 * 144.88274 * 13 12 2 29 29 H 1.08999 * 109.47173 * 292.06234 * 17 16 14 30 30 H 1.09005 * 109.46928 * 172.05757 * 17 16 14 31 31 H 1.09005 * 109.46998 * 52.06026 * 17 16 14 32 32 H 1.09003 * 110.72299 * 215.35766 * 18 16 14 33 33 H 1.08996 * 110.72616 * 338.64299 * 18 16 14 34 34 H 1.09003 * 110.66776 * 278.98002 * 19 18 16 35 35 H 1.09000 * 110.81056 * 155.91331 * 19 18 16 36 36 H 1.00900 * 111.00043 * 200.27937 * 20 19 18 37 37 H 1.09004 * 109.91492 * 265.97761 * 21 20 19 38 38 H 1.09001 * 109.91638 * 144.68249 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6993 -0.2394 -2.4827 7 7 0.9429 0.8296 -2.6034 8 14 2.3225 -1.1196 -4.0079 9 1 1.8280 -2.5199 -4.0081 10 1 1.8269 -0.4200 -5.2204 11 1 3.8074 -1.1191 -4.0078 12 7 2.0184 -0.6906 1.1961 13 6 1.6373 -2.0831 1.4449 14 6 2.8183 -0.0448 2.0677 15 8 3.2987 -0.6425 3.0074 16 6 3.1157 1.4198 1.8747 17 6 1.8261 2.2387 1.9615 18 6 4.1327 1.9069 2.9323 19 6 5.4821 1.8348 2.1743 20 7 5.1222 2.2625 0.7981 21 6 3.8052 1.6509 0.5173 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 0.7083 1.1608 -3.4844 26 1 0.7691 -2.1101 2.1035 27 1 1.3915 -2.5669 0.4997 28 1 2.4678 -2.6084 1.9167 29 1 1.1929 2.0113 1.1039 30 1 2.0697 3.3011 1.9618 31 1 1.2970 1.9869 2.8806 32 1 3.9143 2.9312 3.2344 33 1 4.1395 1.2420 3.7959 34 1 5.8679 0.8153 2.1718 35 1 6.2091 2.5188 2.6120 36 1 5.8137 1.9542 0.1312 37 1 3.9398 0.6996 0.0025 38 1 3.2053 2.3253 -0.0938 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063093036.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:49 Heat of formation + Delta-G solvation = -28.275220 kcal Electronic energy + Delta-G solvation = -18976.126283 eV Core-core repulsion = 16239.678919 eV Total energy + Delta-G solvation = -2736.447364 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.15570 -37.05727 -35.70108 -32.68919 -31.98762 -29.26232 -28.87053 -26.45241 -25.51132 -24.94944 -22.13208 -21.19859 -20.33595 -17.91816 -16.74666 -16.34525 -15.50980 -14.99573 -14.77478 -14.39420 -14.05210 -13.33568 -13.08839 -13.03688 -12.46372 -12.16989 -11.91169 -11.68031 -11.63554 -11.44223 -11.31814 -11.06414 -10.95861 -10.84313 -10.62612 -10.43874 -10.35219 -10.23624 -10.15289 -9.28657 -8.98545 -8.54826 -8.11408 -7.65402 -6.21536 -4.29721 3.20105 3.25996 3.27201 3.36405 3.93147 4.28809 4.69164 4.96368 5.08838 5.11632 5.22753 5.53722 5.69803 5.80115 6.01850 6.07690 6.15103 6.18215 6.24606 6.34359 6.38774 6.41251 6.47997 6.54928 6.61615 6.66491 6.74063 6.89195 7.10910 7.20438 7.40154 7.62774 7.68196 7.83356 8.08865 8.42726 8.72021 8.98857 9.38260 10.82786 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.023899 B = 0.009675 C = 0.008542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.332088 B = 2893.252625 C = 3277.063676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.239 3.761 3 H 0.075 0.925 4 C -0.531 4.531 5 H 0.059 0.941 6 C 0.070 3.930 7 N -0.885 5.885 8 Si 0.896 3.104 9 H -0.277 1.277 10 H -0.285 1.285 11 H -0.277 1.277 12 N -0.589 5.589 13 C 0.094 3.906 14 C 0.518 3.482 15 O -0.575 6.575 16 C -0.085 4.085 17 C -0.143 4.143 18 C -0.106 4.106 19 C 0.038 3.962 20 N -0.675 5.675 21 C 0.052 3.948 22 H 0.032 0.968 23 H 0.013 0.987 24 H 0.095 0.905 25 H 0.266 0.734 26 H 0.039 0.961 27 H 0.077 0.923 28 H 0.056 0.944 29 H 0.083 0.917 30 H 0.064 0.936 31 H 0.052 0.948 32 H 0.074 0.926 33 H 0.085 0.915 34 H 0.039 0.961 35 H 0.076 0.924 36 H 0.334 0.666 37 H 0.066 0.934 38 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.507 2.030 5.199 6.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.138 3.862 3 H 0.092 0.908 4 C -0.570 4.570 5 H 0.077 0.923 6 C -0.133 4.133 7 N -0.523 5.523 8 Si 0.724 3.276 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.318 5.318 13 C -0.050 4.050 14 C 0.305 3.695 15 O -0.456 6.456 16 C -0.089 4.089 17 C -0.201 4.201 18 C -0.144 4.144 19 C -0.091 4.091 20 N -0.304 5.304 21 C -0.077 4.077 22 H 0.051 0.949 23 H 0.033 0.967 24 H 0.113 0.887 25 H 0.076 0.924 26 H 0.057 0.943 27 H 0.096 0.904 28 H 0.075 0.925 29 H 0.102 0.898 30 H 0.083 0.917 31 H 0.071 0.929 32 H 0.093 0.907 33 H 0.104 0.896 34 H 0.057 0.943 35 H 0.094 0.906 36 H 0.149 0.851 37 H 0.085 0.915 38 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 2.391 2.502 5.659 6.634 hybrid contribution 0.392 -1.546 -1.175 1.981 sum 2.783 0.957 4.485 5.364 Atomic orbital electron populations 1.22168 0.98193 0.99961 1.00844 1.19492 0.91528 0.94534 0.80598 0.90800 1.21286 1.32148 1.13352 0.90166 0.92291 1.24847 0.94712 0.94916 0.98860 1.69829 1.35866 1.22449 1.24144 0.86586 0.79269 0.79770 0.82013 1.20242 1.21095 1.20216 1.48199 1.47224 1.12507 1.23900 1.21396 0.98948 0.83351 1.01260 1.20373 0.78323 0.88841 0.81932 1.90555 1.53448 1.68701 1.32945 1.21462 0.97569 0.92721 0.97129 1.22098 0.95652 0.99222 1.03086 1.22504 0.92878 1.01302 0.97748 1.22993 0.97426 0.98506 0.90224 1.63179 1.04567 1.59246 1.03380 1.22942 0.90052 0.99964 0.94736 0.94923 0.96749 0.88693 0.92436 0.94276 0.90437 0.92522 0.89836 0.91749 0.92936 0.90737 0.89605 0.94251 0.90568 0.85099 0.91537 0.88984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.36 8.50 37.16 0.32 -3.05 16 2 C 0.24 5.37 0.94 -69.08 -0.06 5.30 16 3 H 0.07 1.68 2.57 -51.93 -0.13 1.55 16 4 C -0.53 -13.13 7.36 -34.44 -0.25 -13.39 16 5 H 0.06 1.50 7.52 -52.49 -0.39 1.11 16 6 C 0.07 1.74 5.30 -17.82 -0.09 1.65 16 7 N -0.89 -22.59 11.32 55.43 0.63 -21.96 16 8 Si 0.90 19.89 29.54 -169.99 -5.02 14.87 16 9 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 10 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 11 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 12 N -0.59 -12.57 2.74 -175.26 -0.48 -13.05 16 13 C 0.09 1.83 9.32 59.85 0.56 2.39 16 14 C 0.52 10.96 6.30 -10.99 -0.07 10.89 16 15 O -0.57 -13.21 15.03 5.55 0.08 -13.12 16 16 C -0.09 -1.57 0.62 -154.30 -0.10 -1.66 16 17 C -0.14 -2.43 7.98 37.16 0.30 -2.14 16 18 C -0.11 -1.74 6.01 -24.87 -0.15 -1.89 16 19 C 0.04 0.59 7.55 -1.90 -0.01 0.57 16 20 N -0.68 -11.14 7.51 -110.08 -0.83 -11.97 16 21 C 0.05 0.98 5.09 -2.75 -0.01 0.97 16 22 H 0.03 0.70 7.62 -51.93 -0.40 0.30 16 23 H 0.01 0.28 7.63 -51.93 -0.40 -0.12 16 24 H 0.09 2.27 6.07 -51.93 -0.32 1.95 16 25 H 0.27 6.57 8.31 -40.82 -0.34 6.23 16 26 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.08 1.50 7.20 -51.93 -0.37 1.13 16 28 H 0.06 1.09 7.51 -51.93 -0.39 0.70 16 29 H 0.08 1.55 4.58 -51.93 -0.24 1.31 16 30 H 0.06 0.97 7.97 -51.93 -0.41 0.56 16 31 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 32 H 0.07 1.09 7.75 -51.93 -0.40 0.69 16 33 H 0.09 1.49 6.80 -51.93 -0.35 1.13 16 34 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.33 5.08 8.92 -39.29 -0.35 4.73 16 37 H 0.07 1.43 6.30 -51.93 -0.33 1.10 16 38 H 0.09 1.84 6.99 -51.93 -0.36 1.48 16 LS Contribution 288.76 15.07 4.35 4.35 Total: -1.00 -26.79 288.76 -6.52 -33.32 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: -5.67 Total: 7.92 kcal Atomic # 6 Polarization: -0.77 SS G_CDS: 0.42 Total: -0.35 kcal Atomic # 7 Polarization: -46.31 SS G_CDS: -0.68 Total: -46.99 kcal Atomic # 8 Polarization: -13.21 SS G_CDS: 0.08 Total: -13.12 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.02 Total: 14.87 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -26.79 -6.52 -33.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063093036.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.043 kcal (2) G-P(sol) polarization free energy of solvation -26.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds