Wall clock time and date at job start Mon Mar 30 2020 03:15:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08998 * 109.46956 * 2 1 4 4 C 1.50701 * 109.46975 * 239.99787 * 2 1 3 5 5 H 1.08000 * 120.00257 * 239.99572 * 4 2 1 6 6 C 1.37880 * 119.99904 * 60.00282 * 4 2 1 7 7 N 1.31513 * 120.00048 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 119.99982 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47046 * 59.99935 * 8 6 4 10 10 H 1.48496 * 109.47314 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.47440 * 300.00101 * 8 6 4 12 12 N 1.46497 * 109.47245 * 119.99966 * 2 1 3 13 13 C 1.46506 * 119.99925 * 58.48198 * 12 2 1 14 14 C 1.34770 * 119.99879 * 238.48480 * 12 2 1 15 15 O 1.21290 * 120.00200 * 185.18290 * 14 12 2 16 16 C 1.50695 * 120.00291 * 5.18545 * 14 12 2 17 17 C 1.53006 * 110.27472 * 62.07760 * 16 14 12 18 18 C 1.54597 * 110.39556 * 184.22491 * 16 14 12 19 19 C 1.54934 * 102.92135 * 97.00095 * 18 16 14 20 20 N 1.48540 * 103.22835 * 37.41601 * 19 18 16 21 21 C 1.47900 * 105.81634 * 320.79336 * 20 19 18 22 22 H 1.09004 * 109.46688 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.47116 * 300.00130 * 1 2 3 24 24 H 1.09003 * 109.46848 * 60.00594 * 1 2 3 25 25 H 0.96999 * 119.99740 * 180.02562 * 7 6 4 26 26 H 1.09000 * 109.47074 * 264.88265 * 13 12 2 27 27 H 1.08994 * 109.46860 * 24.88475 * 13 12 2 28 28 H 1.09005 * 109.46760 * 144.88274 * 13 12 2 29 29 H 1.08999 * 109.47173 * 292.06234 * 17 16 14 30 30 H 1.09005 * 109.46928 * 172.05757 * 17 16 14 31 31 H 1.09005 * 109.46998 * 52.06026 * 17 16 14 32 32 H 1.09003 * 110.72299 * 215.35766 * 18 16 14 33 33 H 1.08996 * 110.72616 * 338.64299 * 18 16 14 34 34 H 1.09003 * 110.66776 * 278.98002 * 19 18 16 35 35 H 1.09000 * 110.81056 * 155.91331 * 19 18 16 36 36 H 1.00900 * 111.00043 * 200.27937 * 20 19 18 37 37 H 1.09004 * 109.91492 * 265.97761 * 21 20 19 38 38 H 1.09001 * 109.91638 * 144.68249 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6993 -0.2394 -2.4827 7 7 0.9429 0.8296 -2.6034 8 14 2.3225 -1.1196 -4.0079 9 1 1.8280 -2.5199 -4.0081 10 1 1.8269 -0.4200 -5.2204 11 1 3.8074 -1.1191 -4.0078 12 7 2.0184 -0.6906 1.1961 13 6 1.6373 -2.0831 1.4449 14 6 2.8183 -0.0448 2.0677 15 8 3.2987 -0.6425 3.0074 16 6 3.1157 1.4198 1.8747 17 6 1.8261 2.2387 1.9615 18 6 4.1327 1.9069 2.9323 19 6 5.4821 1.8348 2.1743 20 7 5.1222 2.2625 0.7981 21 6 3.8052 1.6509 0.5173 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 0.7083 1.1608 -3.4844 26 1 0.7691 -2.1101 2.1035 27 1 1.3915 -2.5669 0.4997 28 1 2.4678 -2.6084 1.9167 29 1 1.1929 2.0113 1.1039 30 1 2.0697 3.3011 1.9618 31 1 1.2970 1.9869 2.8806 32 1 3.9143 2.9312 3.2344 33 1 4.1395 1.2420 3.7959 34 1 5.8679 0.8153 2.1718 35 1 6.2091 2.5188 2.6120 36 1 5.8137 1.9542 0.1312 37 1 3.9398 0.6996 0.0025 38 1 3.2053 2.3253 -0.0938 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063093036.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:48 Heat of formation + Delta-G solvation = -45.909048 kcal Electronic energy + Delta-G solvation = -18976.890943 eV Core-core repulsion = 16239.678919 eV Total energy + Delta-G solvation = -2737.212024 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.73156 -38.55620 -37.46370 -34.55808 -33.38845 -31.02142 -30.27506 -28.02012 -27.32865 -26.45252 -23.82864 -22.52856 -21.97034 -19.51873 -18.55178 -17.92499 -17.12815 -16.70241 -16.34447 -16.01275 -15.60681 -14.93668 -14.70796 -14.50658 -14.02658 -13.76866 -13.47196 -13.29574 -13.14130 -13.03374 -12.82714 -12.75440 -12.71183 -12.46692 -12.18503 -12.05289 -12.00259 -11.79883 -11.68967 -11.10212 -10.65531 -10.43962 -9.52010 -9.37874 -8.12916 -6.25811 1.42157 1.44946 1.50263 1.69476 2.29460 2.46898 3.14856 3.32568 3.55934 3.70721 3.77207 4.11178 4.35660 4.47175 4.53913 4.63049 4.69549 4.72998 4.77814 4.88757 4.91812 4.96325 4.96725 5.03668 5.09248 5.12705 5.17264 5.26111 5.44777 5.57754 5.70429 5.81980 6.01011 6.22933 6.36094 6.65513 6.84868 7.28033 7.45912 8.89673 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.023899 B = 0.009675 C = 0.008542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.332088 B = 2893.252625 C = 3277.063676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.245 3.755 3 H 0.074 0.926 4 C -0.540 4.540 5 H 0.045 0.955 6 C 0.035 3.965 7 N -0.902 5.902 8 Si 0.945 3.055 9 H -0.277 1.277 10 H -0.282 1.282 11 H -0.278 1.278 12 N -0.595 5.595 13 C 0.093 3.907 14 C 0.512 3.488 15 O -0.596 6.596 16 C -0.087 4.087 17 C -0.137 4.137 18 C -0.102 4.102 19 C 0.040 3.960 20 N -0.669 5.669 21 C 0.062 3.938 22 H 0.030 0.970 23 H 0.030 0.970 24 H 0.076 0.924 25 H 0.266 0.734 26 H 0.055 0.945 27 H 0.074 0.926 28 H 0.055 0.945 29 H 0.064 0.936 30 H 0.085 0.915 31 H 0.060 0.940 32 H 0.098 0.902 33 H 0.076 0.924 34 H 0.026 0.974 35 H 0.107 0.893 36 H 0.342 0.658 37 H 0.035 0.965 38 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.916 2.787 5.661 6.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.144 3.856 3 H 0.091 0.909 4 C -0.579 4.579 5 H 0.063 0.937 6 C -0.166 4.166 7 N -0.540 5.540 8 Si 0.772 3.228 9 H -0.202 1.202 10 H -0.207 1.207 11 H -0.204 1.204 12 N -0.324 5.324 13 C -0.050 4.050 14 C 0.300 3.700 15 O -0.479 6.479 16 C -0.091 4.091 17 C -0.194 4.194 18 C -0.140 4.140 19 C -0.089 4.089 20 N -0.298 5.298 21 C -0.067 4.067 22 H 0.049 0.951 23 H 0.049 0.951 24 H 0.094 0.906 25 H 0.076 0.924 26 H 0.073 0.927 27 H 0.092 0.908 28 H 0.073 0.927 29 H 0.083 0.917 30 H 0.104 0.896 31 H 0.079 0.921 32 H 0.116 0.884 33 H 0.095 0.905 34 H 0.044 0.956 35 H 0.125 0.875 36 H 0.157 0.843 37 H 0.053 0.947 38 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 2.802 3.254 6.119 7.475 hybrid contribution 0.286 -1.804 -1.295 2.239 sum 3.087 1.450 4.824 5.908 Atomic orbital electron populations 1.22019 0.97761 0.99762 1.00649 1.19347 0.91697 0.94345 0.80248 0.90867 1.21425 1.32023 1.13061 0.91390 0.93651 1.25370 0.94958 0.95503 1.00801 1.69908 1.36408 1.23125 1.24527 0.85813 0.78562 0.78846 0.79599 1.20210 1.20708 1.20379 1.48268 1.47321 1.13125 1.23658 1.21454 0.99512 0.82636 1.01411 1.20878 0.77705 0.89986 0.81411 1.90537 1.54121 1.69495 1.33749 1.21541 0.98878 0.91131 0.97535 1.22042 0.94588 1.00245 1.02574 1.22530 0.92471 1.02264 0.96720 1.23069 0.97710 0.98627 0.89500 1.63189 1.03770 1.58641 1.04232 1.22692 0.91324 0.98078 0.94621 0.95050 0.95149 0.90558 0.92432 0.92655 0.90762 0.92657 0.91699 0.89576 0.92130 0.88373 0.90522 0.95560 0.87522 0.84251 0.94677 0.90221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.23 8.50 71.98 0.61 -5.62 16 2 C 0.24 10.97 0.94 44.25 0.04 11.01 16 3 H 0.07 3.34 2.57 -2.39 -0.01 3.33 16 4 C -0.54 -26.86 7.36 25.60 0.19 -26.67 16 5 H 0.05 2.34 7.52 -2.91 -0.02 2.31 16 6 C 0.04 1.75 5.30 84.66 0.45 2.20 16 7 N -0.90 -45.91 11.32 21.45 0.24 -45.67 16 8 Si 0.95 40.62 29.54 68.60 2.03 42.64 16 9 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 10 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 11 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 12 N -0.59 -25.23 2.74 -826.78 -2.26 -27.50 16 13 C 0.09 3.59 9.32 127.77 1.19 4.78 16 14 C 0.51 21.36 6.30 87.66 0.55 21.91 16 15 O -0.60 -27.04 15.03 -3.06 -0.05 -27.08 16 16 C -0.09 -3.10 0.62 -52.05 -0.03 -3.13 16 17 C -0.14 -4.41 7.98 71.98 0.57 -3.84 16 18 C -0.10 -3.10 6.01 31.80 0.19 -2.91 16 19 C 0.04 1.15 7.55 86.65 0.65 1.80 16 20 N -0.67 -20.95 7.51 -502.18 -3.77 -24.72 16 21 C 0.06 2.32 5.09 86.45 0.44 2.76 16 22 H 0.03 1.32 7.62 -2.38 -0.02 1.30 16 23 H 0.03 1.18 7.63 -2.39 -0.02 1.16 16 24 H 0.08 3.63 6.07 -2.39 -0.01 3.62 16 25 H 0.27 13.08 8.31 -92.71 -0.77 12.31 16 26 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 27 H 0.07 2.88 7.20 -2.39 -0.02 2.86 16 28 H 0.05 2.13 7.51 -2.38 -0.02 2.11 16 29 H 0.06 2.34 4.58 -2.39 -0.01 2.33 16 30 H 0.09 2.37 7.97 -2.38 -0.02 2.35 16 31 H 0.06 1.83 8.14 -2.38 -0.02 1.81 16 32 H 0.10 2.53 7.75 -2.39 -0.02 2.51 16 33 H 0.08 2.51 6.80 -2.39 -0.02 2.49 16 34 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.11 2.46 8.14 -2.39 -0.02 2.44 16 36 H 0.34 9.91 8.92 -89.69 -0.80 9.11 16 37 H 0.03 1.52 6.30 -2.39 -0.02 1.50 16 38 H 0.08 3.16 6.99 -2.39 -0.02 3.14 16 Total: -1.00 -55.45 288.76 1.31 -54.13 By element: Atomic # 1 Polarization: 25.64 SS G_CDS: 0.26 Total: 25.90 kcal Atomic # 6 Polarization: -2.58 SS G_CDS: 4.86 Total: 2.28 kcal Atomic # 7 Polarization: -92.09 SS G_CDS: -5.79 Total: -97.89 kcal Atomic # 8 Polarization: -27.04 SS G_CDS: -0.05 Total: -27.08 kcal Atomic # 14 Polarization: 40.62 SS G_CDS: 2.03 Total: 42.64 kcal Total: -55.45 1.31 -54.13 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063093036.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.226 kcal (2) G-P(sol) polarization free energy of solvation -55.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds