Wall clock time and date at job start Mon Mar 30 2020 03:16:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46884 * 2 1 4 4 C 1.50705 * 109.46855 * 240.00496 * 2 1 3 5 5 H 1.07997 * 119.99538 * 240.00023 * 4 2 1 6 6 C 1.37873 * 120.00046 * 59.99892 * 4 2 1 7 7 N 1.31518 * 119.99957 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99914 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46806 * 60.00300 * 8 6 4 10 10 H 1.48502 * 109.46957 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.47175 * 300.00031 * 8 6 4 12 12 N 1.46494 * 109.47368 * 120.00280 * 2 1 3 13 13 C 1.46505 * 120.00105 * 59.99719 * 12 2 1 14 14 C 1.34777 * 120.00354 * 239.99804 * 12 2 1 15 15 O 1.21277 * 119.99674 * 0.02562 * 14 12 2 16 16 C 1.50696 * 119.99917 * 180.02562 * 14 12 2 17 17 H 1.09000 * 109.46765 * 39.97828 * 16 14 12 18 18 C 1.53035 * 109.46492 * 279.99920 * 16 14 12 19 19 C 1.53114 * 109.28189 * 180.81932 * 18 16 14 20 20 C 1.53126 * 109.16071 * 57.65474 * 19 18 16 21 21 C 1.53034 * 109.27454 * 302.34640 * 20 19 18 22 22 N 1.46847 * 109.52486 * 59.18079 * 21 20 19 23 23 H 1.08993 * 109.47222 * 179.97438 * 1 2 3 24 24 H 1.09009 * 109.46687 * 299.99643 * 1 2 3 25 25 H 1.08999 * 109.47344 * 59.99088 * 1 2 3 26 26 H 0.96998 * 119.99550 * 179.97438 * 7 6 4 27 27 H 1.08996 * 109.47059 * 270.00588 * 13 12 2 28 28 H 1.09008 * 109.46691 * 30.00193 * 13 12 2 29 29 H 1.08998 * 109.47176 * 149.99846 * 13 12 2 30 30 H 1.08994 * 109.50219 * 60.87457 * 18 16 14 31 31 H 1.09010 * 109.53489 * 300.77717 * 18 16 14 32 32 H 1.09001 * 109.52084 * 297.74913 * 19 18 16 33 33 H 1.09000 * 109.57760 * 177.58683 * 19 18 16 34 34 H 1.08997 * 109.50129 * 62.28942 * 20 19 18 35 35 H 1.09006 * 109.50177 * 182.40700 * 20 19 18 36 36 H 1.08999 * 109.45899 * 179.20018 * 21 20 19 37 37 H 1.09006 * 109.46754 * 299.15875 * 21 20 19 38 38 H 1.00904 * 110.99874 * 174.15789 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6532 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9426 0.8298 -2.6033 8 14 2.3212 -1.1201 -4.0081 9 1 1.8255 -2.5200 -4.0079 10 1 1.8257 -0.4203 -5.2205 11 1 3.8062 -1.1207 -4.0084 12 7 2.0184 -0.6906 1.1961 13 6 1.6645 -2.0933 1.4279 14 6 2.7933 -0.0357 2.0833 15 8 3.0859 1.1255 1.8916 16 6 3.2961 -0.7464 3.3133 17 1 3.5853 -1.7644 3.0520 18 6 2.1881 -0.7861 4.3681 19 6 2.7098 -1.4908 5.6233 20 6 3.9502 -0.7529 6.1350 21 6 5.0072 -0.7143 5.0290 22 7 4.4598 -0.0299 3.8507 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5140 -0.8899 26 1 0.7086 1.1615 -3.4843 27 1 0.7376 -2.1444 1.9992 28 1 1.5295 -2.5969 0.4706 29 1 2.4629 -2.5820 1.9862 30 1 1.3304 -1.3314 3.9745 31 1 1.8881 0.2312 4.6201 32 1 2.9728 -2.5203 5.3803 33 1 1.9384 -1.4839 6.3934 34 1 3.6786 0.2649 6.4146 35 1 4.3515 -1.2748 7.0039 36 1 5.8862 -0.1773 5.3854 37 1 5.2884 -1.7325 4.7596 38 1 5.1678 0.0926 3.1423 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063093157.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:32 Heat of formation + Delta-G solvation = -39.865132 kcal Electronic energy + Delta-G solvation = -18151.661172 eV Core-core repulsion = 15414.711232 eV Total energy + Delta-G solvation = -2736.949940 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.67285 -37.49574 -35.23072 -32.90890 -32.00416 -31.07172 -29.09611 -26.09299 -25.21622 -24.28683 -23.26223 -21.05620 -19.70548 -18.35221 -16.75603 -16.26637 -16.20715 -15.13200 -14.61994 -14.54283 -14.03835 -13.73470 -13.39873 -13.08614 -13.03415 -12.62992 -12.42345 -11.96177 -11.64324 -11.50960 -11.20763 -11.02887 -10.89814 -10.83654 -10.78492 -10.63078 -10.36499 -10.23394 -10.15314 -9.16560 -8.77745 -8.41219 -8.23093 -7.54102 -6.05884 -4.14133 3.27893 3.33178 3.34013 3.43253 3.81790 4.35817 4.46227 4.81735 4.87806 4.95166 5.20263 5.25087 5.27456 5.35288 5.50717 5.65732 5.71424 5.80931 5.86823 5.91911 6.06349 6.08704 6.14717 6.34243 6.43183 6.77454 6.85407 7.04180 7.11818 7.47139 7.48438 7.57695 7.73632 8.04687 8.22279 8.57559 8.85333 9.13111 9.52428 10.99332 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.041064 B = 0.005949 C = 0.005804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.704899 B = 4705.617948 C = 4823.008258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.258 3.742 3 H 0.063 0.937 4 C -0.526 4.526 5 H 0.058 0.942 6 C 0.065 3.935 7 N -0.887 5.887 8 Si 0.899 3.101 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.277 1.277 12 N -0.593 5.593 13 C 0.083 3.917 14 C 0.504 3.496 15 O -0.536 6.536 16 C 0.073 3.927 17 H 0.055 0.945 18 C -0.106 4.106 19 C -0.118 4.118 20 C -0.119 4.119 21 C 0.060 3.940 22 N -0.669 5.669 23 H 0.029 0.971 24 H 0.011 0.989 25 H 0.093 0.907 26 H 0.264 0.736 27 H 0.043 0.957 28 H 0.080 0.920 29 H 0.052 0.948 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.059 0.941 33 H 0.065 0.935 34 H 0.071 0.929 35 H 0.063 0.937 36 H 0.075 0.925 37 H 0.026 0.974 38 H 0.349 0.651 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.113 -7.281 13.686 15.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.158 3.842 3 H 0.081 0.919 4 C -0.565 4.565 5 H 0.076 0.924 6 C -0.138 4.138 7 N -0.525 5.525 8 Si 0.726 3.274 9 H -0.203 1.203 10 H -0.211 1.211 11 H -0.203 1.203 12 N -0.325 5.325 13 C -0.061 4.061 14 C 0.290 3.710 15 O -0.413 6.413 16 C -0.040 4.040 17 H 0.072 0.928 18 C -0.145 4.145 19 C -0.156 4.156 20 C -0.157 4.157 21 C -0.069 4.069 22 N -0.302 5.302 23 H 0.048 0.952 24 H 0.030 0.970 25 H 0.111 0.889 26 H 0.074 0.926 27 H 0.061 0.939 28 H 0.098 0.902 29 H 0.070 0.930 30 H 0.090 0.910 31 H 0.094 0.906 32 H 0.077 0.923 33 H 0.084 0.916 34 H 0.090 0.910 35 H 0.082 0.918 36 H 0.093 0.907 37 H 0.045 0.955 38 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 2.786 -6.099 13.772 15.318 hybrid contribution 0.703 -1.405 -1.344 2.068 sum 3.490 -7.504 12.428 14.931 Atomic orbital electron populations 1.22075 0.98232 0.99323 1.00763 1.18916 0.90858 0.94531 0.79887 0.91941 1.21277 1.31879 1.12991 0.90365 0.92405 1.24893 0.94951 0.94985 0.98929 1.69874 1.36239 1.22563 1.23842 0.86557 0.79203 0.79551 0.82057 1.20271 1.21146 1.20290 1.48236 1.49304 1.11493 1.23495 1.21645 0.98669 0.83565 1.02261 1.20233 0.79753 0.87303 0.83749 1.90653 1.57682 1.16705 1.76212 1.21490 0.93133 0.95552 0.93870 0.92762 1.21506 0.96593 1.02176 0.94186 1.21570 0.97730 0.98909 0.97377 1.21610 0.95538 1.01387 0.97129 1.21921 0.97107 0.96336 0.91577 1.59941 1.09605 1.50871 1.09788 0.95227 0.97022 0.88899 0.92630 0.93884 0.90164 0.92964 0.91035 0.90629 0.92268 0.91635 0.91015 0.91829 0.90701 0.95548 0.83133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.53 8.97 37.16 0.33 -3.20 16 2 C 0.26 6.69 2.64 -69.08 -0.18 6.51 16 3 H 0.06 1.89 6.90 -51.93 -0.36 1.53 16 4 C -0.53 -14.31 7.99 -34.44 -0.28 -14.58 16 5 H 0.06 1.54 7.33 -52.49 -0.38 1.15 16 6 C 0.06 1.78 5.30 -17.82 -0.09 1.68 16 7 N -0.89 -25.29 11.32 55.43 0.63 -24.66 16 8 Si 0.90 21.08 29.54 -169.99 -5.02 16.06 16 9 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 10 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 12 N -0.59 -12.82 2.75 -175.26 -0.48 -13.30 16 13 C 0.08 1.40 8.55 59.85 0.51 1.91 16 14 C 0.50 10.72 6.84 -10.99 -0.08 10.65 16 15 O -0.54 -13.71 15.85 5.56 0.09 -13.62 16 16 C 0.07 1.16 2.10 -68.88 -0.14 1.01 16 17 H 0.05 0.80 6.31 -51.93 -0.33 0.47 16 18 C -0.11 -1.46 5.28 -26.65 -0.14 -1.61 16 19 C -0.12 -1.26 6.00 -26.61 -0.16 -1.42 16 20 C -0.12 -1.24 6.09 -26.65 -0.16 -1.40 16 21 C 0.06 0.69 6.55 -3.84 -0.03 0.66 16 22 N -0.67 -10.20 6.09 -107.99 -0.66 -10.86 16 23 H 0.03 0.66 7.67 -51.93 -0.40 0.26 16 24 H 0.01 0.25 8.14 -51.92 -0.42 -0.17 16 25 H 0.09 2.47 6.07 -51.93 -0.32 2.15 16 26 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 27 H 0.04 0.65 7.66 -51.93 -0.40 0.25 16 28 H 0.08 1.45 7.02 -51.92 -0.36 1.08 16 29 H 0.05 0.74 5.94 -51.93 -0.31 0.43 16 30 H 0.07 0.94 6.95 -51.93 -0.36 0.58 16 31 H 0.07 1.17 8.14 -51.92 -0.42 0.75 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 38 H 0.35 5.43 8.74 -39.29 -0.34 5.09 16 LS Contribution 297.23 15.07 4.48 4.48 Total: -1.00 -31.08 297.23 -7.46 -38.53 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: -6.08 Total: 3.13 kcal Atomic # 6 Polarization: 0.65 SS G_CDS: -0.41 Total: 0.23 kcal Atomic # 7 Polarization: -48.31 SS G_CDS: -0.51 Total: -48.82 kcal Atomic # 8 Polarization: -13.71 SS G_CDS: 0.09 Total: -13.62 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -31.08 -7.46 -38.53 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063093157.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.331 kcal (2) G-P(sol) polarization free energy of solvation -31.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds