Wall clock time and date at job start Mon Mar 30 2020 03:16:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46884 * 2 1 4 4 C 1.50705 * 109.46855 * 240.00496 * 2 1 3 5 5 H 1.07997 * 119.99538 * 240.00023 * 4 2 1 6 6 C 1.37873 * 120.00046 * 59.99892 * 4 2 1 7 7 N 1.31518 * 119.99957 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99914 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46806 * 60.00300 * 8 6 4 10 10 H 1.48502 * 109.46957 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.47175 * 300.00031 * 8 6 4 12 12 N 1.46494 * 109.47368 * 120.00280 * 2 1 3 13 13 C 1.46505 * 120.00105 * 59.99719 * 12 2 1 14 14 C 1.34777 * 120.00354 * 239.99804 * 12 2 1 15 15 O 1.21277 * 119.99674 * 0.02562 * 14 12 2 16 16 C 1.50696 * 119.99917 * 180.02562 * 14 12 2 17 17 H 1.09000 * 109.46765 * 39.97828 * 16 14 12 18 18 C 1.53035 * 109.46492 * 279.99920 * 16 14 12 19 19 C 1.53114 * 109.28189 * 180.81932 * 18 16 14 20 20 C 1.53126 * 109.16071 * 57.65474 * 19 18 16 21 21 C 1.53034 * 109.27454 * 302.34640 * 20 19 18 22 22 N 1.46847 * 109.52486 * 59.18079 * 21 20 19 23 23 H 1.08993 * 109.47222 * 179.97438 * 1 2 3 24 24 H 1.09009 * 109.46687 * 299.99643 * 1 2 3 25 25 H 1.08999 * 109.47344 * 59.99088 * 1 2 3 26 26 H 0.96998 * 119.99550 * 179.97438 * 7 6 4 27 27 H 1.08996 * 109.47059 * 270.00588 * 13 12 2 28 28 H 1.09008 * 109.46691 * 30.00193 * 13 12 2 29 29 H 1.08998 * 109.47176 * 149.99846 * 13 12 2 30 30 H 1.08994 * 109.50219 * 60.87457 * 18 16 14 31 31 H 1.09010 * 109.53489 * 300.77717 * 18 16 14 32 32 H 1.09001 * 109.52084 * 297.74913 * 19 18 16 33 33 H 1.09000 * 109.57760 * 177.58683 * 19 18 16 34 34 H 1.08997 * 109.50129 * 62.28942 * 20 19 18 35 35 H 1.09006 * 109.50177 * 182.40700 * 20 19 18 36 36 H 1.08999 * 109.45899 * 179.20018 * 21 20 19 37 37 H 1.09006 * 109.46754 * 299.15875 * 21 20 19 38 38 H 1.00904 * 110.99874 * 174.15789 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6532 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9426 0.8298 -2.6033 8 14 2.3212 -1.1201 -4.0081 9 1 1.8255 -2.5200 -4.0079 10 1 1.8257 -0.4203 -5.2205 11 1 3.8062 -1.1207 -4.0084 12 7 2.0184 -0.6906 1.1961 13 6 1.6645 -2.0933 1.4279 14 6 2.7933 -0.0357 2.0833 15 8 3.0859 1.1255 1.8916 16 6 3.2961 -0.7464 3.3133 17 1 3.5853 -1.7644 3.0520 18 6 2.1881 -0.7861 4.3681 19 6 2.7098 -1.4908 5.6233 20 6 3.9502 -0.7529 6.1350 21 6 5.0072 -0.7143 5.0290 22 7 4.4598 -0.0299 3.8507 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5140 -0.8899 26 1 0.7086 1.1615 -3.4843 27 1 0.7376 -2.1444 1.9992 28 1 1.5295 -2.5969 0.4706 29 1 2.4629 -2.5820 1.9862 30 1 1.3304 -1.3314 3.9745 31 1 1.8881 0.2312 4.6201 32 1 2.9728 -2.5203 5.3803 33 1 1.9384 -1.4839 6.3934 34 1 3.6786 0.2649 6.4146 35 1 4.3515 -1.2748 7.0039 36 1 5.8862 -0.1773 5.3854 37 1 5.2884 -1.7325 4.7596 38 1 5.1678 0.0926 3.1423 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063093157.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:32 Heat of formation + Delta-G solvation = -61.788897 kcal Electronic energy + Delta-G solvation = -18152.611857 eV Core-core repulsion = 15414.711232 eV Total energy + Delta-G solvation = -2737.900626 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.16145 -38.77824 -37.06597 -34.83785 -33.01618 -32.44620 -30.80435 -27.60204 -27.31238 -25.57211 -24.25368 -22.73271 -20.78965 -19.92602 -18.54791 -17.96353 -17.64574 -16.85653 -16.16835 -15.89318 -15.40995 -14.99087 -14.53509 -14.45508 -14.28367 -14.00596 -13.99398 -13.52699 -13.35126 -13.02776 -12.87164 -12.75507 -12.65501 -12.27426 -12.19182 -12.12766 -11.81219 -11.66895 -11.28246 -11.20603 -10.58375 -10.35666 -9.36316 -9.31677 -8.14617 -6.31786 1.41174 1.43751 1.51258 1.79740 2.25796 2.46136 3.13057 3.24193 3.64142 3.87790 3.97060 4.08198 4.26996 4.30777 4.48651 4.59615 4.72253 4.75612 4.80179 4.82979 4.89205 4.96854 4.99645 5.06614 5.11580 5.19791 5.27484 5.46333 5.47704 5.58339 5.66637 5.97849 6.09617 6.16110 6.33516 6.76163 6.85464 7.32761 7.50686 8.89689 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.041064 B = 0.005949 C = 0.005804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.704899 B = 4705.617948 C = 4823.008258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.261 3.739 3 H 0.005 0.995 4 C -0.539 4.539 5 H 0.061 0.939 6 C 0.014 3.986 7 N -0.918 5.918 8 Si 0.967 3.033 9 H -0.261 1.261 10 H -0.284 1.284 11 H -0.277 1.277 12 N -0.599 5.599 13 C 0.079 3.921 14 C 0.493 3.507 15 O -0.593 6.593 16 C 0.087 3.913 17 H 0.077 0.923 18 C -0.105 4.105 19 C -0.112 4.112 20 C -0.119 4.119 21 C 0.058 3.942 22 N -0.691 5.691 23 H 0.048 0.952 24 H 0.018 0.982 25 H 0.067 0.933 26 H 0.265 0.735 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.086 0.914 30 H 0.080 0.920 31 H 0.049 0.951 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.056 0.944 35 H 0.092 0.908 36 H 0.085 0.915 37 H 0.042 0.958 38 H 0.342 0.658 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.557 -10.180 15.028 18.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.159 3.841 3 H 0.023 0.977 4 C -0.578 4.578 5 H 0.080 0.920 6 C -0.186 4.186 7 N -0.557 5.557 8 Si 0.792 3.208 9 H -0.186 1.186 10 H -0.209 1.209 11 H -0.203 1.203 12 N -0.330 5.330 13 C -0.063 4.063 14 C 0.281 3.719 15 O -0.473 6.473 16 C -0.026 4.026 17 H 0.094 0.906 18 C -0.143 4.143 19 C -0.149 4.149 20 C -0.156 4.156 21 C -0.070 4.070 22 N -0.324 5.324 23 H 0.067 0.933 24 H 0.037 0.963 25 H 0.085 0.915 26 H 0.074 0.926 27 H 0.085 0.915 28 H 0.088 0.912 29 H 0.105 0.895 30 H 0.098 0.902 31 H 0.068 0.932 32 H 0.096 0.904 33 H 0.101 0.899 34 H 0.075 0.925 35 H 0.111 0.889 36 H 0.104 0.896 37 H 0.061 0.939 38 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 3.222 -9.050 15.152 17.941 hybrid contribution 0.579 -0.450 -1.724 1.874 sum 3.801 -9.500 13.428 16.882 Atomic orbital electron populations 1.21856 0.97142 1.00105 0.99799 1.18516 0.91642 0.92127 0.81812 0.97708 1.21537 1.32001 1.13111 0.91108 0.92034 1.25767 0.95045 0.95643 1.02101 1.70028 1.37247 1.23917 1.24500 0.85484 0.78346 0.79001 0.78015 1.18563 1.20932 1.20302 1.48241 1.49205 1.13305 1.22259 1.21902 1.01135 0.80658 1.02639 1.21310 0.78728 0.86936 0.84921 1.90616 1.59615 1.19436 1.77670 1.21413 0.94055 0.95402 0.91710 0.90559 1.21542 0.96190 1.01417 0.95174 1.21571 0.98149 0.99262 0.95927 1.21649 0.95291 1.01013 0.97681 1.22079 0.97773 0.96944 0.90220 1.59965 1.09541 1.52232 1.10690 0.93340 0.96337 0.91475 0.92635 0.91467 0.91178 0.89537 0.90189 0.93198 0.90373 0.89903 0.92545 0.88905 0.89632 0.93943 0.83928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.45 8.97 71.98 0.65 -5.80 16 2 C 0.26 13.97 2.64 44.25 0.12 14.08 16 3 H 0.00 0.32 6.90 -2.39 -0.02 0.30 16 4 C -0.54 -29.66 7.99 25.60 0.20 -29.46 16 5 H 0.06 3.26 7.33 -2.91 -0.02 3.24 16 6 C 0.01 0.78 5.30 84.65 0.45 1.22 16 7 N -0.92 -53.74 11.32 21.45 0.24 -53.49 16 8 Si 0.97 43.24 29.54 68.60 2.03 45.27 16 9 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 10 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 11 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 12 N -0.60 -25.92 2.75 -826.79 -2.28 -28.20 16 13 C 0.08 2.49 8.55 127.77 1.09 3.58 16 14 C 0.49 21.29 6.84 87.66 0.60 21.89 16 15 O -0.59 -31.94 15.85 -3.02 -0.05 -31.98 16 16 C 0.09 2.65 2.10 44.19 0.09 2.74 16 17 H 0.08 1.98 6.31 -2.39 -0.02 1.97 16 18 C -0.10 -2.67 5.28 30.64 0.16 -2.51 16 19 C -0.11 -1.95 6.00 30.67 0.18 -1.76 16 20 C -0.12 -2.09 6.09 30.65 0.19 -1.90 16 21 C 0.06 1.18 6.55 86.32 0.57 1.74 16 22 N -0.69 -20.48 6.09 -495.57 -3.02 -23.50 16 23 H 0.05 2.15 7.67 -2.39 -0.02 2.13 16 24 H 0.02 0.83 8.14 -2.38 -0.02 0.81 16 25 H 0.07 3.68 6.07 -2.39 -0.01 3.66 16 26 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 27 H 0.07 1.81 7.66 -2.39 -0.02 1.79 16 28 H 0.07 2.38 7.02 -2.38 -0.02 2.36 16 29 H 0.09 2.12 5.94 -2.39 -0.01 2.11 16 30 H 0.08 1.87 6.95 -2.39 -0.02 1.86 16 31 H 0.05 1.52 8.14 -2.38 -0.02 1.50 16 32 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.09 1.14 8.14 -2.38 -0.02 1.12 16 36 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.04 0.75 8.14 -2.38 -0.02 0.73 16 38 H 0.34 10.67 8.74 -89.69 -0.78 9.89 16 Total: -1.00 -70.90 297.23 1.48 -69.42 By element: Atomic # 1 Polarization: 18.40 SS G_CDS: 0.26 Total: 18.66 kcal Atomic # 6 Polarization: -0.47 SS G_CDS: 4.30 Total: 3.83 kcal Atomic # 7 Polarization: -100.14 SS G_CDS: -5.05 Total: -105.19 kcal Atomic # 8 Polarization: -31.94 SS G_CDS: -0.05 Total: -31.98 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.27 kcal Total: -70.90 1.48 -69.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063093157.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.628 kcal (2) G-P(sol) polarization free energy of solvation -70.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds