Wall clock time and date at job start Mon Mar 30 2020 03:16:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09000 * 109.46402 * 2 1 4 4 C 1.50699 * 109.47044 * 120.00211 * 2 1 3 5 5 H 1.07992 * 119.99978 * 120.00350 * 4 2 1 6 6 C 1.37876 * 119.99781 * 299.99667 * 4 2 1 7 7 N 1.31512 * 120.00063 * 180.02562 * 6 4 2 8 8 Si 1.86799 * 120.00157 * 0.02562 * 6 4 2 9 9 H 1.48508 * 109.46965 * 89.99708 * 8 6 4 10 10 H 1.48498 * 109.47362 * 209.99782 * 8 6 4 11 11 H 1.48499 * 109.47415 * 329.99777 * 8 6 4 12 12 N 1.46502 * 109.47134 * 240.00097 * 2 1 3 13 13 C 1.46499 * 120.00062 * 300.00045 * 12 2 1 14 14 C 1.34779 * 119.99726 * 119.99799 * 12 2 1 15 15 O 1.21279 * 120.00410 * 359.97438 * 14 12 2 16 16 C 1.50703 * 119.99541 * 179.97438 * 14 12 2 17 17 H 1.08995 * 109.46646 * 319.97774 * 16 14 12 18 18 C 1.53043 * 109.46078 * 79.95044 * 16 14 12 19 19 C 1.53119 * 109.27518 * 179.19140 * 18 16 14 20 20 C 1.53118 * 109.16468 * 302.34661 * 19 18 16 21 21 C 1.53038 * 109.27978 * 57.65098 * 20 19 18 22 22 N 1.46845 * 109.52358 * 300.82626 * 21 20 19 23 23 H 1.09002 * 109.47164 * 60.00347 * 1 2 3 24 24 H 1.09003 * 109.46815 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46982 * 299.99790 * 1 2 3 26 26 H 0.96995 * 120.00228 * 180.02562 * 7 6 4 27 27 H 1.09002 * 109.47391 * 89.99876 * 13 12 2 28 28 H 1.09001 * 109.46813 * 329.99933 * 13 12 2 29 29 H 1.09004 * 109.47041 * 210.00060 * 13 12 2 30 30 H 1.08996 * 109.50423 * 299.12969 * 18 16 14 31 31 H 1.08996 * 109.50592 * 59.25058 * 18 16 14 32 32 H 1.08997 * 109.52304 * 182.43629 * 19 18 16 33 33 H 1.09001 * 109.57508 * 62.28098 * 19 18 16 34 34 H 1.09001 * 109.49722 * 297.71258 * 20 19 18 35 35 H 1.08996 * 109.53906 * 177.61966 * 20 19 18 36 36 H 1.08994 * 109.46242 * 180.80768 * 21 20 19 37 37 H 1.08998 * 109.45982 * 60.83801 * 21 20 19 38 38 H 1.00900 * 111.00098 * 185.83598 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5884 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 2.1381 -0.8590 3.5565 8 14 0.6249 1.2791 2.6541 9 1 -0.8028 0.8726 2.6997 10 1 0.9760 1.9951 3.9068 11 1 0.8471 2.1765 1.4921 12 7 2.0184 -0.6906 -1.1962 13 6 1.6645 -2.0932 -1.4281 14 6 2.7932 -0.0355 -2.0833 15 8 3.0858 1.1257 -1.8917 16 6 3.2960 -0.7461 -3.3135 17 1 3.5860 -1.7638 -3.0522 18 6 2.1874 -0.7868 -4.3678 19 6 2.7091 -1.4916 -5.6230 20 6 3.9487 -0.7533 -6.1355 21 6 5.0063 -0.7135 -5.0301 22 7 4.4590 -0.0290 -3.8518 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.9035 -0.5279 4.4374 27 1 0.7376 -2.1444 -1.9994 28 1 1.5296 -2.5968 -0.4709 29 1 2.4630 -2.5818 -1.9864 30 1 1.3303 -1.3326 -3.9737 31 1 1.8873 0.2303 -4.6198 32 1 1.9369 -1.4846 -6.3922 33 1 2.9726 -2.5212 -5.3808 34 1 3.6763 0.2644 -6.4153 35 1 4.3501 -1.2745 -7.0046 36 1 5.8847 -0.1759 -5.3870 37 1 5.2882 -1.7313 -4.7604 38 1 5.1672 0.0943 -3.1438 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063093159.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:35 Heat of formation + Delta-G solvation = -31.387443 kcal Electronic energy + Delta-G solvation = -18211.011228 eV Core-core repulsion = 15474.428908 eV Total energy + Delta-G solvation = -2736.582320 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.80387 -37.62417 -35.43389 -32.86453 -32.05930 -31.32378 -29.87416 -26.23038 -25.17160 -24.41328 -23.32600 -21.20959 -19.74311 -18.41078 -17.08659 -16.43522 -16.27484 -15.33015 -14.85534 -14.58752 -14.15539 -13.64396 -13.48539 -13.25460 -13.06839 -12.76962 -12.66806 -12.22027 -12.10333 -11.78980 -11.59617 -11.29936 -11.10461 -10.89321 -10.83756 -10.71542 -10.41833 -10.13674 -9.63560 -9.33323 -8.88810 -8.63744 -8.30201 -7.70933 -6.15362 -4.15967 3.23593 3.28295 3.37442 3.40810 3.66494 4.33609 4.35402 4.75927 4.80775 4.89960 5.12730 5.18312 5.20826 5.29182 5.46182 5.61180 5.66777 5.74606 5.81622 5.86153 5.97205 6.03778 6.08805 6.25279 6.27553 6.31341 6.38739 6.49349 6.83775 6.95807 7.19292 7.38467 7.42554 7.63397 8.20822 8.47715 8.84097 8.96265 9.46043 10.97312 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.043294 B = 0.006205 C = 0.006129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.591179 B = 4511.205916 C = 4567.505307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.229 3.771 3 H 0.062 0.938 4 C -0.528 4.528 5 H 0.078 0.922 6 C 0.076 3.924 7 N -0.896 5.896 8 Si 0.884 3.116 9 H -0.277 1.277 10 H -0.294 1.294 11 H -0.263 1.263 12 N -0.587 5.587 13 C 0.081 3.919 14 C 0.507 3.493 15 O -0.536 6.536 16 C 0.073 3.927 17 H 0.058 0.942 18 C -0.107 4.107 19 C -0.118 4.118 20 C -0.119 4.119 21 C 0.060 3.940 22 N -0.669 5.669 23 H 0.032 0.968 24 H 0.055 0.945 25 H 0.049 0.951 26 H 0.266 0.734 27 H 0.044 0.956 28 H 0.085 0.915 29 H 0.056 0.944 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.065 0.935 33 H 0.060 0.940 34 H 0.071 0.929 35 H 0.064 0.936 36 H 0.075 0.925 37 H 0.028 0.972 38 H 0.350 0.650 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.418 -3.596 -16.703 17.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.127 3.873 3 H 0.080 0.920 4 C -0.566 4.566 5 H 0.096 0.904 6 C -0.127 4.127 7 N -0.533 5.533 8 Si 0.714 3.286 9 H -0.204 1.204 10 H -0.221 1.221 11 H -0.188 1.188 12 N -0.319 5.319 13 C -0.063 4.063 14 C 0.293 3.707 15 O -0.412 6.412 16 C -0.040 4.040 17 H 0.075 0.925 18 C -0.145 4.145 19 C -0.156 4.156 20 C -0.157 4.157 21 C -0.070 4.070 22 N -0.303 5.303 23 H 0.052 0.948 24 H 0.074 0.926 25 H 0.068 0.932 26 H 0.076 0.924 27 H 0.063 0.937 28 H 0.104 0.896 29 H 0.074 0.926 30 H 0.090 0.910 31 H 0.094 0.906 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.090 0.910 35 H 0.082 0.918 36 H 0.094 0.906 37 H 0.046 0.954 38 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 0.194 -2.548 -16.742 16.936 hybrid contribution -0.192 -0.204 0.779 0.828 sum 0.002 -2.752 -15.963 16.199 Atomic orbital electron populations 1.22440 0.99099 1.01033 0.99193 1.19273 0.89964 0.95231 0.82799 0.92011 1.21154 1.32686 1.14220 0.88526 0.90397 1.24862 0.95661 0.96592 0.95609 1.69871 1.45222 1.40244 0.97975 0.86906 0.80395 0.83842 0.77496 1.20402 1.22144 1.18771 1.47867 1.49573 1.11705 1.22764 1.21712 0.98842 0.83014 1.02750 1.20276 0.79448 0.87238 0.83745 1.90650 1.57541 1.16780 1.76278 1.21471 0.93254 0.95670 0.93565 0.92485 1.21518 0.96559 1.02166 0.94252 1.21568 0.97753 0.98970 0.97307 1.21609 0.95527 1.01368 0.97170 1.21924 0.97119 0.96434 0.91478 1.59947 1.09655 1.50806 1.09853 0.94849 0.92623 0.93232 0.92432 0.93710 0.89639 0.92579 0.90991 0.90643 0.91609 0.92164 0.91047 0.91766 0.90630 0.95420 0.83038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.47 8.67 37.16 0.32 -3.15 16 2 C 0.23 5.59 2.23 -69.08 -0.15 5.43 16 3 H 0.06 1.69 5.96 -51.93 -0.31 1.38 16 4 C -0.53 -14.61 8.57 -34.44 -0.30 -14.91 16 5 H 0.08 2.31 7.58 -52.49 -0.40 1.91 16 6 C 0.08 2.16 5.45 -17.82 -0.10 2.06 16 7 N -0.90 -26.98 13.96 55.43 0.77 -26.21 16 8 Si 0.88 22.02 24.37 -169.99 -4.14 17.88 16 9 H -0.28 -6.59 6.87 56.52 0.39 -6.20 16 10 H -0.29 -7.34 7.11 56.52 0.40 -6.93 16 11 H -0.26 -6.52 6.53 56.52 0.37 -6.15 16 12 N -0.59 -12.14 2.75 -175.25 -0.48 -12.62 16 13 C 0.08 1.31 8.55 59.85 0.51 1.83 16 14 C 0.51 10.31 6.84 -10.98 -0.08 10.23 16 15 O -0.54 -13.06 15.85 5.56 0.09 -12.98 16 16 C 0.07 1.12 2.10 -68.87 -0.14 0.98 16 17 H 0.06 0.81 6.31 -51.93 -0.33 0.48 16 18 C -0.11 -1.38 5.28 -26.65 -0.14 -1.52 16 19 C -0.12 -1.19 6.00 -26.61 -0.16 -1.35 16 20 C -0.12 -1.18 6.09 -26.65 -0.16 -1.34 16 21 C 0.06 0.66 6.55 -3.83 -0.03 0.64 16 22 N -0.67 -9.83 6.09 -107.99 -0.66 -10.49 16 23 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.05 1.12 7.67 -51.93 -0.40 0.72 16 25 H 0.05 1.12 3.27 -51.93 -0.17 0.95 16 26 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 27 H 0.04 0.62 7.66 -51.93 -0.40 0.22 16 28 H 0.08 1.53 7.02 -51.93 -0.36 1.17 16 29 H 0.06 0.77 5.94 -51.93 -0.31 0.46 16 30 H 0.07 0.87 6.94 -51.93 -0.36 0.51 16 31 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 38 H 0.35 5.28 8.74 -39.29 -0.34 4.94 16 LS Contribution 290.40 15.07 4.38 4.38 Total: -1.00 -32.26 290.40 -6.41 -38.66 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: -5.94 Total: 2.48 kcal Atomic # 6 Polarization: -0.69 SS G_CDS: -0.42 Total: -1.11 kcal Atomic # 7 Polarization: -48.94 SS G_CDS: -0.37 Total: -49.31 kcal Atomic # 8 Polarization: -13.06 SS G_CDS: 0.09 Total: -12.98 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.14 Total: 17.88 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -32.26 -6.41 -38.66 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063093159.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.275 kcal (2) G-P(sol) polarization free energy of solvation -32.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds