Wall clock time and date at job start Mon Mar 30 2020 03:16:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09000 * 109.46402 * 2 1 4 4 C 1.50699 * 109.47044 * 120.00211 * 2 1 3 5 5 H 1.07992 * 119.99978 * 120.00350 * 4 2 1 6 6 C 1.37876 * 119.99781 * 299.99667 * 4 2 1 7 7 N 1.31512 * 120.00063 * 180.02562 * 6 4 2 8 8 Si 1.86799 * 120.00157 * 0.02562 * 6 4 2 9 9 H 1.48508 * 109.46965 * 89.99708 * 8 6 4 10 10 H 1.48498 * 109.47362 * 209.99782 * 8 6 4 11 11 H 1.48499 * 109.47415 * 329.99777 * 8 6 4 12 12 N 1.46502 * 109.47134 * 240.00097 * 2 1 3 13 13 C 1.46499 * 120.00062 * 300.00045 * 12 2 1 14 14 C 1.34779 * 119.99726 * 119.99799 * 12 2 1 15 15 O 1.21279 * 120.00410 * 359.97438 * 14 12 2 16 16 C 1.50703 * 119.99541 * 179.97438 * 14 12 2 17 17 H 1.08995 * 109.46646 * 319.97774 * 16 14 12 18 18 C 1.53043 * 109.46078 * 79.95044 * 16 14 12 19 19 C 1.53119 * 109.27518 * 179.19140 * 18 16 14 20 20 C 1.53118 * 109.16468 * 302.34661 * 19 18 16 21 21 C 1.53038 * 109.27978 * 57.65098 * 20 19 18 22 22 N 1.46845 * 109.52358 * 300.82626 * 21 20 19 23 23 H 1.09002 * 109.47164 * 60.00347 * 1 2 3 24 24 H 1.09003 * 109.46815 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46982 * 299.99790 * 1 2 3 26 26 H 0.96995 * 120.00228 * 180.02562 * 7 6 4 27 27 H 1.09002 * 109.47391 * 89.99876 * 13 12 2 28 28 H 1.09001 * 109.46813 * 329.99933 * 13 12 2 29 29 H 1.09004 * 109.47041 * 210.00060 * 13 12 2 30 30 H 1.08996 * 109.50423 * 299.12969 * 18 16 14 31 31 H 1.08996 * 109.50592 * 59.25058 * 18 16 14 32 32 H 1.08997 * 109.52304 * 182.43629 * 19 18 16 33 33 H 1.09001 * 109.57508 * 62.28098 * 19 18 16 34 34 H 1.09001 * 109.49722 * 297.71258 * 20 19 18 35 35 H 1.08996 * 109.53906 * 177.61966 * 20 19 18 36 36 H 1.08994 * 109.46242 * 180.80768 * 21 20 19 37 37 H 1.08998 * 109.45982 * 60.83801 * 21 20 19 38 38 H 1.00900 * 111.00098 * 185.83598 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5884 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 2.1381 -0.8590 3.5565 8 14 0.6249 1.2791 2.6541 9 1 -0.8028 0.8726 2.6997 10 1 0.9760 1.9951 3.9068 11 1 0.8471 2.1765 1.4921 12 7 2.0184 -0.6906 -1.1962 13 6 1.6645 -2.0932 -1.4281 14 6 2.7932 -0.0355 -2.0833 15 8 3.0858 1.1257 -1.8917 16 6 3.2960 -0.7461 -3.3135 17 1 3.5860 -1.7638 -3.0522 18 6 2.1874 -0.7868 -4.3678 19 6 2.7091 -1.4916 -5.6230 20 6 3.9487 -0.7533 -6.1355 21 6 5.0063 -0.7135 -5.0301 22 7 4.4590 -0.0290 -3.8518 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.9035 -0.5279 4.4374 27 1 0.7376 -2.1444 -1.9994 28 1 1.5296 -2.5968 -0.4709 29 1 2.4630 -2.5818 -1.9864 30 1 1.3303 -1.3326 -3.9737 31 1 1.8873 0.2303 -4.6198 32 1 1.9369 -1.4846 -6.3922 33 1 2.9726 -2.5212 -5.3808 34 1 3.6763 0.2644 -6.4153 35 1 4.3501 -1.2745 -7.0046 36 1 5.8847 -0.1759 -5.3870 37 1 5.2882 -1.7313 -4.7604 38 1 5.1672 0.0943 -3.1438 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063093159.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:34 Heat of formation + Delta-G solvation = -55.743323 kcal Electronic energy + Delta-G solvation = -18212.067378 eV Core-core repulsion = 15474.428908 eV Total energy + Delta-G solvation = -2737.638470 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.23876 -38.83795 -37.18297 -34.82155 -33.02977 -32.87241 -31.29847 -27.68271 -27.18739 -25.67708 -24.26286 -22.79978 -20.77586 -19.93627 -18.97299 -17.99600 -17.74752 -16.99367 -16.41714 -15.77523 -15.45587 -15.06303 -14.79859 -14.46864 -14.37334 -14.15963 -14.04658 -13.97214 -13.57696 -13.32711 -13.02672 -13.00043 -12.68846 -12.28509 -12.06806 -11.82458 -11.66570 -11.59199 -11.36996 -11.28454 -10.81206 -10.45934 -9.40199 -9.38101 -8.36997 -6.41297 1.24487 1.34469 1.43189 1.72640 2.18697 2.26251 2.98546 3.21692 3.58934 3.86801 3.96863 4.07823 4.26024 4.29810 4.43138 4.46889 4.55705 4.58565 4.61247 4.75472 4.81063 4.82586 4.96785 4.97699 5.03973 5.12182 5.19921 5.26722 5.29439 5.47663 5.49031 5.70268 5.98578 6.21083 6.31242 6.60282 6.74374 7.20727 7.39061 8.78944 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.043294 B = 0.006205 C = 0.006129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.591179 B = 4511.205916 C = 4567.505307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.231 3.769 3 H 0.027 0.973 4 C -0.526 4.526 5 H 0.046 0.954 6 C 0.024 3.976 7 N -0.938 5.938 8 Si 0.941 3.059 9 H -0.252 1.252 10 H -0.295 1.295 11 H -0.265 1.265 12 N -0.594 5.594 13 C 0.078 3.922 14 C 0.498 3.502 15 O -0.587 6.587 16 C 0.085 3.915 17 H 0.075 0.925 18 C -0.104 4.104 19 C -0.113 4.113 20 C -0.118 4.118 21 C 0.058 3.942 22 N -0.690 5.690 23 H 0.054 0.946 24 H 0.071 0.929 25 H 0.041 0.959 26 H 0.269 0.731 27 H 0.078 0.922 28 H 0.064 0.936 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.054 0.946 32 H 0.084 0.916 33 H 0.075 0.925 34 H 0.058 0.942 35 H 0.091 0.909 36 H 0.085 0.915 37 H 0.040 0.960 38 H 0.342 0.658 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.655 -4.539 -19.074 19.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.127 3.873 3 H 0.045 0.955 4 C -0.564 4.564 5 H 0.064 0.936 6 C -0.175 4.175 7 N -0.578 5.578 8 Si 0.768 3.232 9 H -0.177 1.177 10 H -0.223 1.223 11 H -0.190 1.190 12 N -0.325 5.325 13 C -0.064 4.064 14 C 0.286 3.714 15 O -0.467 6.467 16 C -0.028 4.028 17 H 0.092 0.908 18 C -0.143 4.143 19 C -0.150 4.150 20 C -0.156 4.156 21 C -0.071 4.071 22 N -0.323 5.323 23 H 0.073 0.927 24 H 0.090 0.910 25 H 0.059 0.941 26 H 0.078 0.922 27 H 0.096 0.904 28 H 0.083 0.917 29 H 0.103 0.897 30 H 0.101 0.899 31 H 0.073 0.927 32 H 0.102 0.898 33 H 0.094 0.906 34 H 0.076 0.924 35 H 0.109 0.891 36 H 0.104 0.896 37 H 0.058 0.942 38 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -0.896 -3.537 -19.151 19.496 hybrid contribution 0.245 0.047 1.485 1.506 sum -0.651 -3.490 -17.666 18.019 Atomic orbital electron populations 1.22292 0.96540 1.02327 0.99806 1.18944 0.91876 0.93331 0.83136 0.95469 1.21351 1.31745 1.13124 0.90183 0.93568 1.25622 0.97133 0.99403 0.95331 1.69992 1.47073 1.42141 0.98592 0.85986 0.80000 0.80218 0.77021 1.17744 1.22253 1.19021 1.47945 1.49608 1.13336 1.21640 1.21937 1.01536 0.80385 1.02571 1.21275 0.78348 0.86923 0.84840 1.90614 1.59223 1.19228 1.77645 1.21437 0.94233 0.95349 0.91759 0.90803 1.21554 0.96093 1.01662 0.94947 1.21573 0.98152 0.99207 0.96092 1.21641 0.95280 1.01099 0.97578 1.22079 0.97848 0.96871 0.90282 1.59991 1.09583 1.52039 1.10644 0.92678 0.90975 0.94072 0.92222 0.90410 0.91703 0.89700 0.89865 0.92740 0.89788 0.90594 0.92353 0.89067 0.89640 0.94157 0.83964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.35 8.67 71.98 0.62 -5.72 16 2 C 0.23 11.29 2.23 44.25 0.10 11.39 16 3 H 0.03 1.53 5.96 -2.39 -0.01 1.51 16 4 C -0.53 -29.76 8.57 25.60 0.22 -29.54 16 5 H 0.05 2.84 7.58 -2.91 -0.02 2.82 16 6 C 0.02 1.39 5.45 84.65 0.46 1.85 16 7 N -0.94 -57.79 13.96 21.45 0.30 -57.49 16 8 Si 0.94 45.67 24.37 68.60 1.67 47.34 16 9 H -0.25 -11.17 6.87 99.48 0.68 -10.49 16 10 H -0.30 -14.25 7.11 99.48 0.71 -13.55 16 11 H -0.27 -12.89 6.53 99.48 0.65 -12.24 16 12 N -0.59 -24.25 2.75 -826.77 -2.28 -26.52 16 13 C 0.08 2.38 8.55 127.77 1.09 3.47 16 14 C 0.50 20.18 6.84 87.66 0.60 20.78 16 15 O -0.59 -29.42 15.85 -3.02 -0.05 -29.47 16 16 C 0.09 2.46 2.10 44.19 0.09 2.55 16 17 H 0.07 1.88 6.31 -2.39 -0.02 1.86 16 18 C -0.10 -2.43 5.28 30.65 0.16 -2.26 16 19 C -0.11 -1.83 6.00 30.67 0.18 -1.64 16 20 C -0.12 -1.96 6.09 30.65 0.19 -1.78 16 21 C 0.06 1.13 6.55 86.33 0.57 1.69 16 22 N -0.69 -19.58 6.09 -495.56 -3.02 -22.60 16 23 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 24 H 0.07 2.74 7.67 -2.39 -0.02 2.72 16 25 H 0.04 1.78 3.27 -2.39 -0.01 1.77 16 26 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 27 H 0.08 1.88 7.66 -2.39 -0.02 1.87 16 28 H 0.06 2.27 7.02 -2.39 -0.02 2.25 16 29 H 0.08 2.08 5.94 -2.38 -0.01 2.07 16 30 H 0.08 1.73 6.94 -2.39 -0.02 1.71 16 31 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 38 H 0.34 10.35 8.74 -89.69 -0.78 9.57 16 Total: -1.00 -72.51 290.40 1.10 -71.41 By element: Atomic # 1 Polarization: 16.35 SS G_CDS: 0.19 Total: 16.54 kcal Atomic # 6 Polarization: -3.50 SS G_CDS: 4.29 Total: 0.79 kcal Atomic # 7 Polarization: -101.62 SS G_CDS: -5.00 Total: -106.61 kcal Atomic # 8 Polarization: -29.42 SS G_CDS: -0.05 Total: -29.47 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 1.67 Total: 47.34 kcal Total: -72.51 1.10 -71.41 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063093159.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.664 kcal (2) G-P(sol) polarization free energy of solvation -72.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds