Wall clock time and date at job start Mon Mar 30 2020 03:16:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.46986 * 2 1 4 4 C 1.50697 * 109.46783 * 240.00411 * 2 1 3 5 5 H 1.08008 * 119.99905 * 240.00032 * 4 2 1 6 6 C 1.37878 * 120.00547 * 59.99969 * 4 2 1 7 7 N 1.31512 * 119.99389 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00309 * 179.97438 * 6 4 2 9 9 H 1.48508 * 109.46745 * 89.99947 * 8 6 4 10 10 H 1.48496 * 109.47064 * 210.00016 * 8 6 4 11 11 H 1.48493 * 109.47199 * 330.00480 * 8 6 4 12 12 N 1.46501 * 109.46964 * 120.00352 * 2 1 3 13 13 C 1.46497 * 120.00159 * 60.00192 * 12 2 1 14 14 C 1.34782 * 119.99660 * 239.99771 * 12 2 1 15 15 O 1.21283 * 119.99937 * 0.02562 * 14 12 2 16 16 C 1.50700 * 119.99770 * 180.02562 * 14 12 2 17 17 H 1.08999 * 109.45472 * 319.97602 * 16 14 12 18 18 C 1.53044 * 109.46137 * 79.94547 * 16 14 12 19 19 C 1.53121 * 109.27467 * 179.19537 * 18 16 14 20 20 C 1.53118 * 109.15998 * 302.34543 * 19 18 16 21 21 C 1.53034 * 109.28068 * 57.65604 * 20 19 18 22 22 N 1.46847 * 109.46034 * 199.99883 * 16 14 12 23 23 H 1.09007 * 109.46808 * 299.99885 * 1 2 3 24 24 H 1.09003 * 109.47370 * 59.99742 * 1 2 3 25 25 H 1.08999 * 109.46986 * 180.02562 * 1 2 3 26 26 H 0.97007 * 120.00024 * 180.02562 * 7 6 4 27 27 H 1.09000 * 109.47103 * 269.99903 * 13 12 2 28 28 H 1.08999 * 109.46966 * 29.99363 * 13 12 2 29 29 H 1.08998 * 109.47318 * 149.99889 * 13 12 2 30 30 H 1.08996 * 109.50067 * 59.25352 * 18 16 14 31 31 H 1.08993 * 109.50192 * 299.13420 * 18 16 14 32 32 H 1.09004 * 109.51709 * 182.44592 * 19 18 16 33 33 H 1.08992 * 109.57642 * 62.28071 * 19 18 16 34 34 H 1.09001 * 109.50624 * 297.71626 * 20 19 18 35 35 H 1.09002 * 109.53418 * 177.61821 * 20 19 18 36 36 H 1.09000 * 109.46341 * 180.80474 * 21 20 19 37 37 H 1.08999 * 109.46274 * 60.83372 * 21 20 19 38 38 H 1.00901 * 110.99839 * 54.14820 * 22 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9436 0.8303 -2.6033 8 14 2.3224 -1.1194 -4.0080 9 1 1.3446 -2.1614 -4.4124 10 1 2.4871 -0.1400 -5.1121 11 1 3.6306 -1.7565 -3.7121 12 7 2.0183 -0.6907 1.1961 13 6 1.6645 -2.0933 1.4279 14 6 2.7932 -0.0357 2.0833 15 8 3.0859 1.1256 1.8916 16 6 3.2960 -0.7463 3.3135 17 1 2.5066 -1.3828 3.7132 18 6 4.5075 -1.6064 2.9462 19 6 5.0270 -2.3106 4.2026 20 6 5.3803 -1.2592 5.2583 21 6 4.1436 -0.4092 5.5585 22 7 3.6858 0.2438 4.3255 23 1 -0.3633 0.5139 0.8901 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 0.7088 1.1616 -3.4844 27 1 0.7376 -2.1445 1.9992 28 1 1.5295 -2.5968 0.4707 29 1 2.4629 -2.5820 1.9862 30 1 5.2921 -0.9723 2.5335 31 1 4.2141 -2.3512 2.2065 32 1 5.9161 -2.8901 3.9540 33 1 4.2567 -2.9750 4.5938 34 1 6.1787 -0.6197 4.8820 35 1 5.7110 -1.7556 6.1706 36 1 4.3956 0.3496 6.2993 37 1 3.3502 -1.0473 5.9477 38 1 2.9294 0.8842 4.5149 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063093161.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:37 Heat of formation + Delta-G solvation = -39.619401 kcal Electronic energy + Delta-G solvation = -18172.769853 eV Core-core repulsion = 15435.830569 eV Total energy + Delta-G solvation = -2736.939284 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.68317 -37.49145 -35.23537 -32.91126 -32.00342 -31.09029 -29.07066 -26.10437 -25.21761 -24.27346 -23.25803 -21.06279 -19.63612 -18.40414 -16.74317 -16.30730 -16.17597 -15.11012 -14.64114 -14.50608 -14.01673 -13.72011 -13.41087 -13.17734 -13.04860 -12.62647 -12.38463 -11.96268 -11.57867 -11.48110 -11.23552 -11.07288 -10.85325 -10.81498 -10.71607 -10.67061 -10.33216 -10.23786 -10.15013 -9.15215 -8.77341 -8.41096 -8.25901 -7.53791 -6.05339 -4.13201 3.27214 3.34293 3.36635 3.42503 3.81246 4.36855 4.45986 4.82780 4.88114 4.96831 5.24907 5.25387 5.29255 5.35287 5.50535 5.68403 5.71006 5.73949 5.87480 5.98367 6.03237 6.10418 6.19189 6.35905 6.46143 6.76231 6.83966 7.03535 7.11019 7.45896 7.48094 7.57827 7.74039 8.04678 8.22691 8.57637 8.86352 9.13022 9.53306 10.99993 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.036469 B = 0.006278 C = 0.005900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.589635 B = 4459.148412 C = 4744.400836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.258 3.742 3 H 0.063 0.937 4 C -0.525 4.525 5 H 0.059 0.941 6 C 0.064 3.936 7 N -0.888 5.888 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.594 5.594 13 C 0.079 3.921 14 C 0.504 3.496 15 O -0.535 6.535 16 C 0.075 3.925 17 H 0.052 0.948 18 C -0.109 4.109 19 C -0.118 4.118 20 C -0.119 4.119 21 C 0.060 3.940 22 N -0.668 5.668 23 H 0.009 0.991 24 H 0.093 0.907 25 H 0.029 0.971 26 H 0.263 0.737 27 H 0.040 0.960 28 H 0.081 0.919 29 H 0.056 0.944 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.065 0.935 33 H 0.058 0.942 34 H 0.071 0.929 35 H 0.063 0.937 36 H 0.075 0.925 37 H 0.026 0.974 38 H 0.348 0.652 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.601 -7.461 13.442 15.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.158 3.842 3 H 0.081 0.919 4 C -0.563 4.563 5 H 0.077 0.923 6 C -0.138 4.138 7 N -0.526 5.526 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.326 5.326 13 C -0.065 4.065 14 C 0.290 3.710 15 O -0.412 6.412 16 C -0.038 4.038 17 H 0.070 0.930 18 C -0.147 4.147 19 C -0.156 4.156 20 C -0.157 4.157 21 C -0.069 4.069 22 N -0.301 5.301 23 H 0.029 0.971 24 H 0.111 0.889 25 H 0.048 0.952 26 H 0.073 0.927 27 H 0.058 0.942 28 H 0.099 0.901 29 H 0.074 0.926 30 H 0.096 0.904 31 H 0.093 0.907 32 H 0.084 0.916 33 H 0.077 0.923 34 H 0.090 0.910 35 H 0.082 0.918 36 H 0.093 0.907 37 H 0.044 0.956 38 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 4.286 -6.635 12.917 15.141 hybrid contribution -0.666 -0.915 -0.526 1.249 sum 3.620 -7.550 12.391 14.955 Atomic orbital electron populations 1.22079 0.98281 0.99308 1.00710 1.18921 0.90776 0.94560 0.79977 0.91936 1.21320 1.31741 1.12957 0.90316 0.92271 1.24897 0.94986 0.94972 0.98960 1.69883 1.36439 1.22558 1.23721 0.86496 0.79173 0.79284 0.82445 1.20649 1.21098 1.19937 1.48228 1.49111 1.11535 1.23694 1.21689 0.98732 0.83645 1.02387 1.20255 0.79207 0.87213 0.84354 1.90654 1.57359 1.16913 1.76288 1.21454 0.96963 0.93099 0.92325 0.93034 1.21577 0.97181 0.98300 0.97684 1.21574 1.00878 0.97520 0.95627 1.21609 0.98148 0.97372 0.98551 1.21920 0.96515 0.97052 0.91410 1.59933 1.42998 1.18216 1.08988 0.97143 0.88864 0.95233 0.92708 0.94162 0.90065 0.92571 0.90439 0.90710 0.91589 0.92291 0.90985 0.91827 0.90707 0.95568 0.83297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.52 8.97 37.16 0.33 -3.19 16 2 C 0.26 6.69 2.64 -69.08 -0.18 6.50 16 3 H 0.06 1.89 6.90 -51.93 -0.36 1.53 16 4 C -0.52 -14.28 7.99 -34.44 -0.28 -14.55 16 5 H 0.06 1.58 7.33 -52.48 -0.38 1.19 16 6 C 0.06 1.76 5.30 -17.82 -0.09 1.67 16 7 N -0.89 -25.34 11.32 55.43 0.63 -24.72 16 8 Si 0.90 21.14 29.54 -169.99 -5.02 16.12 16 9 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 10 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16 12 N -0.59 -12.84 2.75 -175.26 -0.48 -13.32 16 13 C 0.08 1.35 8.88 59.85 0.53 1.88 16 14 C 0.50 10.74 6.84 -10.98 -0.08 10.66 16 15 O -0.54 -13.70 15.85 5.56 0.09 -13.61 16 16 C 0.07 1.19 1.99 -68.87 -0.14 1.06 16 17 H 0.05 0.74 7.21 -51.93 -0.37 0.37 16 18 C -0.11 -1.57 5.10 -26.65 -0.14 -1.71 16 19 C -0.12 -1.30 6.00 -26.61 -0.16 -1.46 16 20 C -0.12 -1.26 6.09 -26.65 -0.16 -1.42 16 21 C 0.06 0.69 6.55 -3.83 -0.03 0.66 16 22 N -0.67 -10.08 6.09 -107.99 -0.66 -10.74 16 23 H 0.01 0.22 8.14 -51.92 -0.42 -0.20 16 24 H 0.09 2.48 6.07 -51.93 -0.32 2.16 16 25 H 0.03 0.66 7.67 -51.93 -0.40 0.26 16 26 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 27 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.08 1.46 7.02 -51.93 -0.36 1.09 16 29 H 0.06 0.79 4.75 -51.93 -0.25 0.55 16 30 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 31 H 0.07 1.05 6.32 -51.93 -0.33 0.72 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.03 0.28 8.14 -51.93 -0.42 -0.15 16 38 H 0.35 5.22 8.74 -39.29 -0.34 4.87 16 LS Contribution 296.82 15.07 4.47 4.47 Total: -1.00 -31.19 296.82 -7.41 -38.60 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: -6.05 Total: 3.09 kcal Atomic # 6 Polarization: 0.48 SS G_CDS: -0.38 Total: 0.10 kcal Atomic # 7 Polarization: -48.26 SS G_CDS: -0.51 Total: -48.78 kcal Atomic # 8 Polarization: -13.70 SS G_CDS: 0.09 Total: -13.61 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -31.19 -7.41 -38.60 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063093161.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.023 kcal (2) G-P(sol) polarization free energy of solvation -31.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds