Wall clock time and date at job start Mon Mar 30 2020 03:16:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.46986 * 2 1 4 4 C 1.50697 * 109.46783 * 240.00411 * 2 1 3 5 5 H 1.08008 * 119.99905 * 240.00032 * 4 2 1 6 6 C 1.37878 * 120.00547 * 59.99969 * 4 2 1 7 7 N 1.31512 * 119.99389 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00309 * 179.97438 * 6 4 2 9 9 H 1.48508 * 109.46745 * 89.99947 * 8 6 4 10 10 H 1.48496 * 109.47064 * 210.00016 * 8 6 4 11 11 H 1.48493 * 109.47199 * 330.00480 * 8 6 4 12 12 N 1.46501 * 109.46964 * 120.00352 * 2 1 3 13 13 C 1.46497 * 120.00159 * 60.00192 * 12 2 1 14 14 C 1.34782 * 119.99660 * 239.99771 * 12 2 1 15 15 O 1.21283 * 119.99937 * 0.02562 * 14 12 2 16 16 C 1.50700 * 119.99770 * 180.02562 * 14 12 2 17 17 H 1.08999 * 109.45472 * 319.97602 * 16 14 12 18 18 C 1.53044 * 109.46137 * 79.94547 * 16 14 12 19 19 C 1.53121 * 109.27467 * 179.19537 * 18 16 14 20 20 C 1.53118 * 109.15998 * 302.34543 * 19 18 16 21 21 C 1.53034 * 109.28068 * 57.65604 * 20 19 18 22 22 N 1.46847 * 109.46034 * 199.99883 * 16 14 12 23 23 H 1.09007 * 109.46808 * 299.99885 * 1 2 3 24 24 H 1.09003 * 109.47370 * 59.99742 * 1 2 3 25 25 H 1.08999 * 109.46986 * 180.02562 * 1 2 3 26 26 H 0.97007 * 120.00024 * 180.02562 * 7 6 4 27 27 H 1.09000 * 109.47103 * 269.99903 * 13 12 2 28 28 H 1.08999 * 109.46966 * 29.99363 * 13 12 2 29 29 H 1.08998 * 109.47318 * 149.99889 * 13 12 2 30 30 H 1.08996 * 109.50067 * 59.25352 * 18 16 14 31 31 H 1.08993 * 109.50192 * 299.13420 * 18 16 14 32 32 H 1.09004 * 109.51709 * 182.44592 * 19 18 16 33 33 H 1.08992 * 109.57642 * 62.28071 * 19 18 16 34 34 H 1.09001 * 109.50624 * 297.71626 * 20 19 18 35 35 H 1.09002 * 109.53418 * 177.61821 * 20 19 18 36 36 H 1.09000 * 109.46341 * 180.80474 * 21 20 19 37 37 H 1.08999 * 109.46274 * 60.83372 * 21 20 19 38 38 H 1.00901 * 110.99839 * 54.14820 * 22 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9436 0.8303 -2.6033 8 14 2.3224 -1.1194 -4.0080 9 1 1.3446 -2.1614 -4.4124 10 1 2.4871 -0.1400 -5.1121 11 1 3.6306 -1.7565 -3.7121 12 7 2.0183 -0.6907 1.1961 13 6 1.6645 -2.0933 1.4279 14 6 2.7932 -0.0357 2.0833 15 8 3.0859 1.1256 1.8916 16 6 3.2960 -0.7463 3.3135 17 1 2.5066 -1.3828 3.7132 18 6 4.5075 -1.6064 2.9462 19 6 5.0270 -2.3106 4.2026 20 6 5.3803 -1.2592 5.2583 21 6 4.1436 -0.4092 5.5585 22 7 3.6858 0.2438 4.3255 23 1 -0.3633 0.5139 0.8901 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 0.7088 1.1616 -3.4844 27 1 0.7376 -2.1445 1.9992 28 1 1.5295 -2.5968 0.4707 29 1 2.4629 -2.5820 1.9862 30 1 5.2921 -0.9723 2.5335 31 1 4.2141 -2.3512 2.2065 32 1 5.9161 -2.8901 3.9540 33 1 4.2567 -2.9750 4.5938 34 1 6.1787 -0.6197 4.8820 35 1 5.7110 -1.7556 6.1706 36 1 4.3956 0.3496 6.2993 37 1 3.3502 -1.0473 5.9477 38 1 2.9294 0.8842 4.5149 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063093161.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:37 Heat of formation + Delta-G solvation = -61.677731 kcal Electronic energy + Delta-G solvation = -18173.726374 eV Core-core repulsion = 15435.830569 eV Total energy + Delta-G solvation = -2737.895805 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.17446 -38.78252 -37.07275 -34.84098 -33.02762 -32.48034 -30.78262 -27.61582 -27.31592 -25.56292 -24.27535 -22.72981 -20.72743 -19.99514 -18.56091 -17.92075 -17.67481 -16.87069 -16.10771 -15.93008 -15.41110 -14.93058 -14.79057 -14.35216 -14.27534 -14.05705 -13.96732 -13.55997 -13.35050 -12.98494 -12.83571 -12.71936 -12.64295 -12.32758 -12.20477 -12.12076 -11.83814 -11.67521 -11.28913 -11.18000 -10.58412 -10.35763 -9.38654 -9.30064 -8.14665 -6.31393 1.40781 1.42945 1.52691 1.78361 2.25824 2.46116 3.13145 3.24396 3.63052 3.86681 4.01555 4.11935 4.25997 4.28362 4.39648 4.62810 4.70563 4.73943 4.79535 4.82500 4.88280 4.95230 4.98588 5.05546 5.11755 5.20742 5.27230 5.46413 5.47464 5.57974 5.66872 5.97846 6.09799 6.16292 6.35614 6.76704 6.85216 7.32856 7.50375 8.89836 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.036469 B = 0.006278 C = 0.005900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.589635 B = 4459.148412 C = 4744.400836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.261 3.739 3 H 0.005 0.995 4 C -0.538 4.538 5 H 0.062 0.938 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.966 3.034 9 H -0.266 1.266 10 H -0.286 1.286 11 H -0.271 1.271 12 N -0.600 5.600 13 C 0.076 3.924 14 C 0.493 3.507 15 O -0.592 6.592 16 C 0.089 3.911 17 H 0.079 0.921 18 C -0.109 4.109 19 C -0.111 4.111 20 C -0.119 4.119 21 C 0.059 3.941 22 N -0.691 5.691 23 H 0.018 0.982 24 H 0.067 0.933 25 H 0.047 0.953 26 H 0.264 0.736 27 H 0.064 0.936 28 H 0.071 0.929 29 H 0.089 0.911 30 H 0.047 0.953 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.054 0.946 35 H 0.093 0.907 36 H 0.087 0.913 37 H 0.045 0.955 38 H 0.344 0.656 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.962 -10.290 14.877 18.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.159 3.841 3 H 0.023 0.977 4 C -0.576 4.576 5 H 0.080 0.920 6 C -0.186 4.186 7 N -0.557 5.557 8 Si 0.791 3.209 9 H -0.191 1.191 10 H -0.212 1.212 11 H -0.195 1.195 12 N -0.331 5.331 13 C -0.067 4.067 14 C 0.281 3.719 15 O -0.473 6.473 16 C -0.024 4.024 17 H 0.096 0.904 18 C -0.147 4.147 19 C -0.149 4.149 20 C -0.157 4.157 21 C -0.069 4.069 22 N -0.325 5.325 23 H 0.037 0.963 24 H 0.086 0.914 25 H 0.066 0.934 26 H 0.073 0.927 27 H 0.083 0.917 28 H 0.090 0.910 29 H 0.107 0.893 30 H 0.065 0.935 31 H 0.096 0.904 32 H 0.099 0.901 33 H 0.099 0.901 34 H 0.073 0.927 35 H 0.112 0.888 36 H 0.105 0.895 37 H 0.063 0.937 38 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 4.644 -9.515 14.385 17.862 hybrid contribution -0.768 0.018 -0.936 1.210 sum 3.876 -9.497 13.450 16.915 Atomic orbital electron populations 1.21855 0.97104 1.00088 0.99824 1.18523 0.91622 0.92144 0.81855 0.97676 1.21576 1.31869 1.13058 0.91110 0.92015 1.25764 0.95093 0.95636 1.02103 1.70032 1.37412 1.23885 1.24418 0.85433 0.78863 0.78243 0.78337 1.19091 1.21216 1.19546 1.48237 1.48997 1.13345 1.22486 1.21943 1.01152 0.80774 1.02790 1.21336 0.78122 0.86808 0.85626 1.90616 1.59233 1.19616 1.77797 1.21359 0.98139 0.92955 0.89897 0.90357 1.21606 0.95614 0.97789 0.99718 1.21571 1.02025 0.97550 0.93729 1.21649 0.97225 0.97094 0.99709 1.22074 0.97239 0.97725 0.89894 1.59941 1.43091 1.18776 1.10652 0.96295 0.91445 0.93390 0.92657 0.91732 0.91032 0.89253 0.93453 0.90361 0.90118 0.90133 0.92715 0.88809 0.89513 0.93706 0.83740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.41 8.97 71.98 0.65 -5.77 16 2 C 0.26 13.95 2.64 44.25 0.12 14.07 16 3 H 0.01 0.34 6.90 -2.39 -0.02 0.32 16 4 C -0.54 -29.70 7.99 25.60 0.20 -29.50 16 5 H 0.06 3.29 7.33 -2.91 -0.02 3.27 16 6 C 0.01 0.75 5.30 84.66 0.45 1.20 16 7 N -0.92 -53.84 11.32 21.45 0.24 -53.59 16 8 Si 0.97 43.48 29.54 68.60 2.03 45.51 16 9 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 10 H -0.29 -12.85 7.11 99.48 0.71 -12.15 16 11 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 12 N -0.60 -26.00 2.75 -826.80 -2.28 -28.28 16 13 C 0.08 2.40 8.88 127.77 1.13 3.53 16 14 C 0.49 21.31 6.84 87.66 0.60 21.91 16 15 O -0.59 -31.89 15.85 -3.04 -0.05 -31.94 16 16 C 0.09 2.72 1.99 44.19 0.09 2.81 16 17 H 0.08 1.98 7.21 -2.39 -0.02 1.96 16 18 C -0.11 -2.93 5.10 30.65 0.16 -2.78 16 19 C -0.11 -2.03 6.00 30.67 0.18 -1.85 16 20 C -0.12 -2.13 6.09 30.65 0.19 -1.94 16 21 C 0.06 1.17 6.55 86.32 0.57 1.73 16 22 N -0.69 -20.15 6.09 -495.56 -3.02 -23.17 16 23 H 0.02 0.85 8.14 -2.38 -0.02 0.83 16 24 H 0.07 3.68 6.07 -2.39 -0.01 3.67 16 25 H 0.05 2.13 7.67 -2.39 -0.02 2.11 16 26 H 0.26 14.65 8.31 -92.70 -0.77 13.88 16 27 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 28 H 0.07 2.43 7.02 -2.39 -0.02 2.42 16 29 H 0.09 2.22 4.75 -2.39 -0.01 2.21 16 30 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.08 2.01 6.32 -2.39 -0.02 1.99 16 32 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.05 1.17 8.14 -2.39 -0.02 1.16 16 35 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.34 10.24 8.74 -89.69 -0.78 9.45 16 Total: -1.00 -71.20 296.82 1.52 -69.68 By element: Atomic # 1 Polarization: 18.11 SS G_CDS: 0.26 Total: 18.37 kcal Atomic # 6 Polarization: -0.91 SS G_CDS: 4.33 Total: 3.42 kcal Atomic # 7 Polarization: -99.99 SS G_CDS: -5.05 Total: -105.04 kcal Atomic # 8 Polarization: -31.89 SS G_CDS: -0.05 Total: -31.94 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Total: -71.20 1.52 -69.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063093161.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.002 kcal (2) G-P(sol) polarization free energy of solvation -71.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds