Wall clock time and date at job start Mon Mar 30 2020 03:16:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47211 * 2 1 4 4 C 1.50694 * 109.47481 * 120.00486 * 2 1 3 5 5 H 1.07996 * 120.00071 * 114.37123 * 4 2 1 6 6 C 1.37878 * 119.99815 * 294.36705 * 4 2 1 7 7 N 1.31517 * 119.99844 * 157.07818 * 6 4 2 8 8 Si 1.86797 * 120.00216 * 336.80128 * 6 4 2 9 9 H 1.48499 * 109.47227 * 180.27441 * 8 6 4 10 10 H 1.48501 * 109.47122 * 300.27403 * 8 6 4 11 11 H 1.48503 * 109.47195 * 60.27598 * 8 6 4 12 12 N 1.46501 * 109.47139 * 240.00747 * 2 1 3 13 13 C 1.46501 * 119.99734 * 299.99712 * 12 2 1 14 14 C 1.34772 * 120.00577 * 119.99600 * 12 2 1 15 15 O 1.21282 * 119.99660 * 0.02562 * 14 12 2 16 16 C 1.50701 * 120.00634 * 180.02562 * 14 12 2 17 17 H 1.09003 * 109.49780 * 300.08293 * 16 14 12 18 18 C 1.53115 * 109.50642 * 179.97438 * 16 14 12 19 19 C 1.53120 * 109.15923 * 182.40168 * 18 16 14 20 20 C 1.53028 * 109.27739 * 57.65754 * 19 18 16 21 21 N 1.46851 * 109.52606 * 300.81879 * 20 19 18 22 22 C 1.46849 * 111.19713 * 61.74111 * 21 20 19 23 23 H 1.08998 * 109.46807 * 173.24856 * 1 2 3 24 24 H 1.09002 * 109.46612 * 293.24555 * 1 2 3 25 25 H 1.08994 * 109.47198 * 53.24454 * 1 2 3 26 26 H 0.96998 * 119.99762 * 354.64207 * 7 6 4 27 27 H 1.08994 * 109.47182 * 89.99921 * 13 12 2 28 28 H 1.08994 * 109.47160 * 210.00016 * 13 12 2 29 29 H 1.09003 * 109.47253 * 329.99871 * 13 12 2 30 30 H 1.08995 * 109.52604 * 302.31235 * 18 16 14 31 31 H 1.09006 * 109.52326 * 62.50057 * 18 16 14 32 32 H 1.09000 * 109.49889 * 177.59603 * 19 18 16 33 33 H 1.09001 * 109.50425 * 297.67330 * 19 18 16 34 34 H 1.09008 * 109.46512 * 60.83422 * 20 19 18 35 35 H 1.09002 * 109.46848 * 180.81078 * 20 19 18 36 36 H 1.00899 * 110.99837 * 297.64626 * 21 20 19 37 37 H 1.08993 * 109.46375 * 178.24336 * 22 21 20 38 38 H 1.09003 * 109.46372 * 58.27442 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2303 5 1 2.5763 -1.6385 1.1337 6 6 1.7978 -0.1757 2.4793 7 7 1.8118 -0.9525 3.5405 8 14 1.4676 1.6535 2.6652 9 1 1.2544 1.9748 4.0992 10 1 2.6314 2.4210 2.1536 11 1 0.2545 2.0188 1.8905 12 7 2.0183 -0.6905 -1.1963 13 6 1.6644 -2.0930 -1.4282 14 6 2.7931 -0.0355 -2.0834 15 8 3.0865 1.1256 -1.8912 16 6 3.2950 -0.7455 -3.3143 17 1 3.8993 -1.6032 -3.0186 18 6 4.1453 0.2165 -4.1486 19 6 4.6011 -0.4943 -5.4259 20 6 3.3732 -0.9785 -6.2003 21 7 2.5934 -1.8961 -5.3599 22 6 2.1049 -1.2225 -4.1499 23 1 -0.3633 -1.0205 -0.1208 24 1 -0.3632 0.4056 0.9443 25 1 -0.3633 0.6149 -0.8233 26 1 1.9097 -1.9120 3.4378 27 1 0.7376 -2.1442 -1.9995 28 1 2.4628 -2.5816 -1.9866 29 1 1.5296 -2.5968 -0.4710 30 1 3.5525 1.0927 -4.4109 31 1 5.0176 0.5250 -3.5723 32 1 5.1713 0.1989 -6.0443 33 1 5.2268 -1.3476 -5.1641 34 1 2.7556 -0.1229 -6.4738 35 1 3.6947 -1.4977 -7.1032 36 1 3.1314 -2.7166 -5.1247 37 1 1.5052 -1.9187 -3.5636 38 1 1.4933 -0.3658 -4.4329 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063093164.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:50 Heat of formation + Delta-G solvation = -41.776360 kcal Electronic energy + Delta-G solvation = -18268.596862 eV Core-core repulsion = 15531.564045 eV Total energy + Delta-G solvation = -2737.032817 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.04643 -37.80480 -35.53882 -33.01908 -31.79469 -31.36909 -29.61076 -26.39410 -24.85221 -24.00250 -23.40909 -21.31057 -20.12254 -18.32689 -17.53540 -16.43157 -16.12363 -15.44378 -15.22368 -14.76282 -14.09858 -13.74449 -13.41386 -13.10118 -12.80280 -12.63006 -12.43261 -12.22174 -11.79901 -11.70866 -11.62253 -11.46605 -11.23852 -11.16310 -10.78886 -10.52200 -10.46722 -10.09541 -9.78710 -9.20476 -9.11343 -8.43471 -8.31310 -7.77206 -6.51935 -4.14498 3.24184 3.39824 3.48878 3.62467 3.78560 4.19449 4.46975 4.71097 4.72787 4.94986 5.03118 5.13652 5.21388 5.28990 5.39354 5.47336 5.64440 5.72312 5.82770 5.85348 5.90890 5.95936 6.17246 6.28793 6.31687 6.36117 6.43715 6.60359 6.82359 6.94788 7.16516 7.22125 7.44721 7.85301 8.28392 8.34169 8.75301 8.94415 9.50562 10.82872 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.041505 B = 0.006449 C = 0.006115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.461183 B = 4341.004989 C = 4577.744975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.235 3.765 3 H 0.053 0.947 4 C -0.618 4.618 5 H 0.061 0.939 6 C 0.043 3.957 7 N -0.894 5.894 8 Si 1.031 2.969 9 H -0.283 1.283 10 H -0.280 1.280 11 H -0.276 1.276 12 N -0.586 5.586 13 C 0.083 3.917 14 C 0.510 3.490 15 O -0.554 6.554 16 C -0.143 4.143 17 H 0.090 0.910 18 C -0.098 4.098 19 C -0.157 4.157 20 C 0.054 3.946 21 N -0.681 5.681 22 C 0.055 3.945 23 H 0.046 0.954 24 H 0.061 0.939 25 H 0.025 0.975 26 H 0.269 0.731 27 H 0.048 0.952 28 H 0.056 0.944 29 H 0.081 0.919 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.061 0.939 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.340 0.660 37 H 0.093 0.907 38 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.269 -2.637 -16.556 16.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.133 3.867 3 H 0.071 0.929 4 C -0.655 4.655 5 H 0.079 0.921 6 C -0.164 4.164 7 N -0.526 5.526 8 Si 0.859 3.141 9 H -0.209 1.209 10 H -0.206 1.206 11 H -0.202 1.202 12 N -0.316 5.316 13 C -0.061 4.061 14 C 0.297 3.703 15 O -0.433 6.433 16 C -0.166 4.166 17 H 0.108 0.892 18 C -0.136 4.136 19 C -0.196 4.196 20 C -0.076 4.076 21 N -0.309 5.309 22 C -0.074 4.074 23 H 0.065 0.935 24 H 0.080 0.920 25 H 0.044 0.956 26 H 0.079 0.921 27 H 0.066 0.934 28 H 0.074 0.926 29 H 0.099 0.901 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.079 0.921 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.157 0.843 37 H 0.111 0.889 38 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 0.543 -0.764 -15.654 15.682 hybrid contribution 1.214 -1.314 -0.477 1.851 sum 1.757 -2.077 -16.131 16.359 Atomic orbital electron populations 1.22413 0.98662 1.00121 1.00094 1.19165 0.90365 0.94684 0.82507 0.92888 1.22094 1.41307 1.11146 0.90968 0.92060 1.25622 0.93187 1.05715 0.91829 1.70868 1.43665 1.06335 1.31746 0.84216 0.77669 0.76094 0.76141 1.20902 1.20559 1.20196 1.47948 1.49144 1.11567 1.22979 1.21746 0.98747 0.83174 1.02428 1.20311 0.79023 0.87020 0.83991 1.90629 1.58376 1.17317 1.76975 1.22047 0.99425 1.00019 0.95118 0.89221 1.21345 0.99803 0.97636 0.94833 1.22294 0.98888 1.00860 0.97596 1.22061 0.93112 0.96649 0.95753 1.60732 1.42506 1.08819 1.18845 1.22318 0.95350 0.99917 0.89854 0.93501 0.92016 0.95584 0.92094 0.93353 0.92570 0.90065 0.91114 0.91304 0.91256 0.92073 0.90864 0.90816 0.84301 0.88910 0.90582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.39 9.02 37.16 0.34 -3.05 16 2 C 0.23 5.73 2.23 -69.08 -0.15 5.57 16 3 H 0.05 1.43 5.47 -51.93 -0.28 1.14 16 4 C -0.62 -17.02 8.30 -34.44 -0.29 -17.31 16 5 H 0.06 1.79 7.38 -52.49 -0.39 1.40 16 6 C 0.04 1.24 5.19 -17.82 -0.09 1.15 16 7 N -0.89 -26.76 13.70 55.43 0.76 -26.00 16 8 Si 1.03 25.54 26.45 -169.99 -4.50 21.05 16 9 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 10 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.28 -6.34 6.15 56.52 0.35 -5.99 16 12 N -0.59 -12.14 2.75 -175.27 -0.48 -12.62 16 13 C 0.08 1.35 7.66 59.85 0.46 1.81 16 14 C 0.51 10.28 7.08 -10.99 -0.08 10.20 16 15 O -0.55 -13.33 15.30 5.56 0.09 -13.25 16 16 C -0.14 -2.09 1.87 -91.69 -0.17 -2.26 16 17 H 0.09 1.23 7.40 -51.93 -0.38 0.84 16 18 C -0.10 -1.35 4.58 -26.61 -0.12 -1.47 16 19 C -0.16 -1.59 6.08 -26.65 -0.16 -1.75 16 20 C 0.05 0.52 6.55 -3.84 -0.03 0.49 16 21 N -0.68 -7.19 6.87 -113.82 -0.78 -7.97 16 22 C 0.06 0.69 5.47 -3.83 -0.02 0.67 16 23 H 0.05 0.95 7.45 -51.93 -0.39 0.57 16 24 H 0.06 1.41 5.48 -51.93 -0.28 1.12 16 25 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.27 7.96 8.73 -40.82 -0.36 7.61 16 27 H 0.05 0.68 6.97 -51.93 -0.36 0.32 16 28 H 0.06 0.76 6.00 -51.93 -0.31 0.45 16 29 H 0.08 1.48 6.92 -51.93 -0.36 1.12 16 30 H 0.07 1.05 8.04 -51.93 -0.42 0.63 16 31 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.07 0.74 8.14 -51.92 -0.42 0.32 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.34 3.11 8.86 -39.29 -0.35 2.77 16 37 H 0.09 1.13 4.58 -51.93 -0.24 0.89 16 38 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 289.74 15.07 4.37 4.37 Total: -1.00 -31.60 289.74 -6.79 -38.39 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: -5.93 Total: 1.97 kcal Atomic # 6 Polarization: -5.62 SS G_CDS: -0.32 Total: -5.94 kcal Atomic # 7 Polarization: -46.08 SS G_CDS: -0.50 Total: -46.59 kcal Atomic # 8 Polarization: -13.33 SS G_CDS: 0.09 Total: -13.25 kcal Atomic # 14 Polarization: 25.54 SS G_CDS: -4.50 Total: 21.05 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -31.60 -6.79 -38.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063093164.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.387 kcal (2) G-P(sol) polarization free energy of solvation -31.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds