Wall clock time and date at job start Mon Mar 30 2020 03:16:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47211 * 2 1 4 4 C 1.50694 * 109.47481 * 120.00486 * 2 1 3 5 5 H 1.07996 * 120.00071 * 114.37123 * 4 2 1 6 6 C 1.37878 * 119.99815 * 294.36705 * 4 2 1 7 7 N 1.31517 * 119.99844 * 157.07818 * 6 4 2 8 8 Si 1.86797 * 120.00216 * 336.80128 * 6 4 2 9 9 H 1.48499 * 109.47227 * 180.27441 * 8 6 4 10 10 H 1.48501 * 109.47122 * 300.27403 * 8 6 4 11 11 H 1.48503 * 109.47195 * 60.27598 * 8 6 4 12 12 N 1.46501 * 109.47139 * 240.00747 * 2 1 3 13 13 C 1.46501 * 119.99734 * 299.99712 * 12 2 1 14 14 C 1.34772 * 120.00577 * 119.99600 * 12 2 1 15 15 O 1.21282 * 119.99660 * 0.02562 * 14 12 2 16 16 C 1.50701 * 120.00634 * 180.02562 * 14 12 2 17 17 H 1.09003 * 109.49780 * 300.08293 * 16 14 12 18 18 C 1.53115 * 109.50642 * 179.97438 * 16 14 12 19 19 C 1.53120 * 109.15923 * 182.40168 * 18 16 14 20 20 C 1.53028 * 109.27739 * 57.65754 * 19 18 16 21 21 N 1.46851 * 109.52606 * 300.81879 * 20 19 18 22 22 C 1.46849 * 111.19713 * 61.74111 * 21 20 19 23 23 H 1.08998 * 109.46807 * 173.24856 * 1 2 3 24 24 H 1.09002 * 109.46612 * 293.24555 * 1 2 3 25 25 H 1.08994 * 109.47198 * 53.24454 * 1 2 3 26 26 H 0.96998 * 119.99762 * 354.64207 * 7 6 4 27 27 H 1.08994 * 109.47182 * 89.99921 * 13 12 2 28 28 H 1.08994 * 109.47160 * 210.00016 * 13 12 2 29 29 H 1.09003 * 109.47253 * 329.99871 * 13 12 2 30 30 H 1.08995 * 109.52604 * 302.31235 * 18 16 14 31 31 H 1.09006 * 109.52326 * 62.50057 * 18 16 14 32 32 H 1.09000 * 109.49889 * 177.59603 * 19 18 16 33 33 H 1.09001 * 109.50425 * 297.67330 * 19 18 16 34 34 H 1.09008 * 109.46512 * 60.83422 * 20 19 18 35 35 H 1.09002 * 109.46848 * 180.81078 * 20 19 18 36 36 H 1.00899 * 110.99837 * 297.64626 * 21 20 19 37 37 H 1.08993 * 109.46375 * 178.24336 * 22 21 20 38 38 H 1.09003 * 109.46372 * 58.27442 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2303 5 1 2.5763 -1.6385 1.1337 6 6 1.7978 -0.1757 2.4793 7 7 1.8118 -0.9525 3.5405 8 14 1.4676 1.6535 2.6652 9 1 1.2544 1.9748 4.0992 10 1 2.6314 2.4210 2.1536 11 1 0.2545 2.0188 1.8905 12 7 2.0183 -0.6905 -1.1963 13 6 1.6644 -2.0930 -1.4282 14 6 2.7931 -0.0355 -2.0834 15 8 3.0865 1.1256 -1.8912 16 6 3.2950 -0.7455 -3.3143 17 1 3.8993 -1.6032 -3.0186 18 6 4.1453 0.2165 -4.1486 19 6 4.6011 -0.4943 -5.4259 20 6 3.3732 -0.9785 -6.2003 21 7 2.5934 -1.8961 -5.3599 22 6 2.1049 -1.2225 -4.1499 23 1 -0.3633 -1.0205 -0.1208 24 1 -0.3632 0.4056 0.9443 25 1 -0.3633 0.6149 -0.8233 26 1 1.9097 -1.9120 3.4378 27 1 0.7376 -2.1442 -1.9995 28 1 2.4628 -2.5816 -1.9866 29 1 1.5296 -2.5968 -0.4710 30 1 3.5525 1.0927 -4.4109 31 1 5.0176 0.5250 -3.5723 32 1 5.1713 0.1989 -6.0443 33 1 5.2268 -1.3476 -5.1641 34 1 2.7556 -0.1229 -6.4738 35 1 3.6947 -1.4977 -7.1032 36 1 3.1314 -2.7166 -5.1247 37 1 1.5052 -1.9187 -3.5636 38 1 1.4933 -0.3658 -4.4329 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063093164.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:50 Heat of formation + Delta-G solvation = -65.370236 kcal Electronic energy + Delta-G solvation = -18269.619969 eV Core-core repulsion = 15531.564045 eV Total energy + Delta-G solvation = -2738.055924 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.44104 -39.00900 -37.28908 -34.96562 -33.05234 -32.59436 -31.10089 -27.84663 -26.85424 -25.21203 -24.41902 -22.70991 -21.39148 -19.95589 -19.58982 -17.99482 -17.28723 -16.76090 -16.61778 -15.75466 -15.61279 -15.33852 -14.97559 -14.62564 -14.15948 -14.05957 -13.98641 -13.48910 -13.33576 -13.23519 -13.15127 -12.92944 -12.47780 -12.42709 -12.20979 -11.97243 -11.73524 -11.70397 -11.53689 -11.26302 -10.70284 -10.48486 -9.57695 -9.31821 -8.74238 -6.39890 1.40435 1.47339 1.67128 1.68917 2.25688 2.40182 2.94794 3.28167 3.59405 3.68994 3.89282 4.03805 4.19506 4.22362 4.37557 4.45156 4.53204 4.56130 4.58020 4.69717 4.75040 4.81644 4.90810 4.96584 5.02882 5.06117 5.12303 5.17162 5.30965 5.36495 5.68226 5.80449 5.96584 6.02327 6.48750 6.54000 6.69617 7.23569 7.36637 8.56550 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.041505 B = 0.006449 C = 0.006115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.461183 B = 4341.004989 C = 4577.744975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.233 3.767 3 H 0.027 0.973 4 C -0.613 4.613 5 H 0.035 0.965 6 C 0.001 3.999 7 N -0.922 5.922 8 Si 1.065 2.935 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.247 1.247 12 N -0.594 5.594 13 C 0.081 3.919 14 C 0.500 3.500 15 O -0.602 6.602 16 C -0.131 4.131 17 H 0.106 0.894 18 C -0.099 4.099 19 C -0.146 4.146 20 C 0.054 3.946 21 N -0.677 5.677 22 C 0.066 3.934 23 H 0.060 0.940 24 H 0.051 0.949 25 H 0.045 0.955 26 H 0.259 0.741 27 H 0.078 0.922 28 H 0.087 0.913 29 H 0.058 0.942 30 H 0.053 0.947 31 H 0.048 0.952 32 H 0.082 0.918 33 H 0.073 0.927 34 H 0.066 0.934 35 H 0.099 0.901 36 H 0.352 0.648 37 H 0.101 0.899 38 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.833 -3.349 -19.034 19.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.129 3.871 3 H 0.044 0.956 4 C -0.651 4.651 5 H 0.053 0.947 6 C -0.201 4.201 7 N -0.556 5.556 8 Si 0.888 3.112 9 H -0.204 1.204 10 H -0.212 1.212 11 H -0.171 1.171 12 N -0.324 5.324 13 C -0.061 4.061 14 C 0.289 3.711 15 O -0.484 6.484 16 C -0.154 4.154 17 H 0.124 0.876 18 C -0.137 4.137 19 C -0.185 4.185 20 C -0.075 4.075 21 N -0.305 5.305 22 C -0.064 4.064 23 H 0.079 0.921 24 H 0.070 0.930 25 H 0.064 0.936 26 H 0.068 0.932 27 H 0.097 0.903 28 H 0.106 0.894 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.101 0.899 33 H 0.092 0.908 34 H 0.085 0.915 35 H 0.117 0.883 36 H 0.171 0.829 37 H 0.119 0.881 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 0.096 -1.525 -18.166 18.230 hybrid contribution 1.425 -1.145 0.246 1.845 sum 1.522 -2.670 -17.920 18.181 Atomic orbital electron populations 1.22247 0.96391 1.01410 1.00364 1.18914 0.92013 0.93204 0.82933 0.95558 1.22237 1.40289 1.10043 0.92553 0.94710 1.26690 0.93003 1.08518 0.91899 1.70957 1.46210 1.05921 1.32541 0.83768 0.78585 0.72203 0.76690 1.20439 1.21156 1.17104 1.48014 1.49262 1.13184 1.21956 1.21966 1.01415 0.80642 1.02111 1.21323 0.77955 0.86736 0.85120 1.90598 1.59910 1.19655 1.78251 1.22080 1.00579 0.99924 0.92773 0.87620 1.21346 0.98588 0.97414 0.96334 1.22240 0.99440 1.01162 0.95683 1.22130 0.92478 0.96628 0.96274 1.60733 1.43185 1.09121 1.17492 1.22199 0.94198 0.99709 0.90327 0.92124 0.93048 0.93551 0.93155 0.90343 0.89425 0.92363 0.92861 0.93326 0.89942 0.90817 0.91526 0.88296 0.82928 0.88139 0.91850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.18 9.02 71.98 0.65 -5.53 16 2 C 0.23 11.35 2.23 44.24 0.10 11.44 16 3 H 0.03 1.44 5.47 -2.39 -0.01 1.43 16 4 C -0.61 -34.37 8.30 25.60 0.21 -34.16 16 5 H 0.03 2.09 7.38 -2.91 -0.02 2.07 16 6 C 0.00 0.03 5.19 84.65 0.44 0.47 16 7 N -0.92 -56.32 13.70 21.45 0.29 -56.02 16 8 Si 1.06 51.87 26.45 68.60 1.81 53.69 16 9 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 10 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 11 H -0.25 -10.79 6.15 99.48 0.61 -10.18 16 12 N -0.59 -24.17 2.75 -826.81 -2.28 -26.45 16 13 C 0.08 2.48 7.66 127.77 0.98 3.46 16 14 C 0.50 19.93 7.08 87.66 0.62 20.55 16 15 O -0.60 -29.53 15.30 -3.04 -0.05 -29.57 16 16 C -0.13 -3.58 1.87 -11.49 -0.02 -3.60 16 17 H 0.11 2.58 7.40 -2.39 -0.02 2.57 16 18 C -0.10 -2.60 4.58 30.67 0.14 -2.46 16 19 C -0.15 -2.52 6.08 30.64 0.19 -2.34 16 20 C 0.05 0.85 6.55 86.32 0.57 1.41 16 21 N -0.68 -11.70 6.87 -514.00 -3.53 -15.23 16 22 C 0.07 1.47 5.47 86.33 0.47 1.94 16 23 H 0.06 2.36 7.45 -2.39 -0.02 2.34 16 24 H 0.05 2.26 5.48 -2.39 -0.01 2.25 16 25 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 26 H 0.26 15.82 8.73 -92.71 -0.81 15.01 16 27 H 0.08 1.96 6.97 -2.39 -0.02 1.94 16 28 H 0.09 2.12 6.00 -2.39 -0.01 2.10 16 29 H 0.06 2.08 6.92 -2.39 -0.02 2.06 16 30 H 0.05 1.57 8.04 -2.39 -0.02 1.55 16 31 H 0.05 1.45 8.14 -2.38 -0.02 1.43 16 32 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.07 1.16 8.14 -2.38 -0.02 1.14 16 35 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.35 4.86 8.86 -89.69 -0.79 4.07 16 37 H 0.10 2.07 4.58 -2.39 -0.01 2.06 16 38 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 Total: -1.00 -70.45 289.74 0.72 -69.72 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: 0.13 Total: 12.66 kcal Atomic # 6 Polarization: -13.14 SS G_CDS: 4.34 Total: -8.80 kcal Atomic # 7 Polarization: -92.19 SS G_CDS: -5.51 Total: -97.70 kcal Atomic # 8 Polarization: -29.53 SS G_CDS: -0.05 Total: -29.57 kcal Atomic # 14 Polarization: 51.87 SS G_CDS: 1.81 Total: 53.69 kcal Total: -70.45 0.72 -69.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063093164.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.352 kcal (2) G-P(sol) polarization free energy of solvation -70.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds