Wall clock time and date at job start Mon Mar 30 2020 03:16:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09007 * 109.46809 * 2 1 4 4 C 1.50699 * 109.47243 * 119.99568 * 2 1 3 5 5 H 1.08000 * 119.99518 * 114.28959 * 4 2 1 6 6 C 1.37879 * 120.00473 * 294.29399 * 4 2 1 7 7 N 1.31514 * 120.00245 * 159.62568 * 6 4 2 8 8 Si 1.86804 * 119.99760 * 339.62658 * 6 4 2 9 9 H 1.48494 * 109.47003 * 270.00138 * 8 6 4 10 10 H 1.48502 * 109.46975 * 149.99769 * 8 6 4 11 11 H 1.48508 * 109.46919 * 29.99885 * 8 6 4 12 12 N 1.46494 * 109.47442 * 240.00177 * 2 1 3 13 13 C 1.46501 * 120.00237 * 305.68246 * 12 2 1 14 14 C 1.34782 * 120.00067 * 125.68496 * 12 2 1 15 15 O 1.21285 * 119.99731 * 185.23182 * 14 12 2 16 16 C 1.50696 * 119.99962 * 5.22798 * 14 12 2 17 17 H 1.08996 * 109.50383 * 49.32045 * 16 14 12 18 18 C 1.53118 * 109.50392 * 169.39593 * 16 14 12 19 19 C 1.53122 * 109.16331 * 177.59506 * 18 16 14 20 20 C 1.53037 * 109.27626 * 302.34982 * 19 18 16 21 21 N 1.46850 * 109.52832 * 59.17639 * 20 19 18 22 22 C 1.46845 * 111.19449 * 298.26064 * 21 20 19 23 23 H 1.09009 * 109.46548 * 174.41147 * 1 2 3 24 24 H 1.09000 * 109.47705 * 294.41297 * 1 2 3 25 25 H 1.09004 * 109.47569 * 54.41971 * 1 2 3 26 26 H 0.97000 * 119.99784 * 354.92962 * 7 6 4 27 27 H 1.08998 * 109.47003 * 95.21982 * 13 12 2 28 28 H 1.09000 * 109.47467 * 215.22305 * 13 12 2 29 29 H 1.09004 * 109.46375 * 335.22072 * 13 12 2 30 30 H 1.08995 * 109.52770 * 297.50517 * 18 16 14 31 31 H 1.09006 * 109.51948 * 57.69355 * 18 16 14 32 32 H 1.08995 * 109.49939 * 62.28730 * 19 18 16 33 33 H 1.09003 * 109.50304 * 182.36517 * 19 18 16 34 34 H 1.09006 * 109.46030 * 179.19632 * 20 19 18 35 35 H 1.09006 * 109.46123 * 299.15982 * 20 19 18 36 36 H 1.00892 * 110.99813 * 174.15597 * 21 20 19 37 37 H 1.09003 * 109.46026 * 301.71703 * 22 21 20 38 38 H 1.09008 * 109.45891 * 181.75528 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.5751 -1.6390 1.1341 6 6 1.7990 -0.1746 2.4794 7 7 1.8623 -0.9413 3.5461 8 14 1.3930 1.6401 2.6562 9 1 2.6485 2.4134 2.8323 10 1 0.5190 1.8387 3.8403 11 1 0.6886 2.1109 1.4365 12 7 2.0183 -0.6905 -1.1961 13 6 1.5649 -2.0517 -1.4927 14 6 2.8850 -0.0736 -2.0238 15 8 3.2159 -0.6064 -3.0619 16 6 3.4426 1.2781 -1.6594 17 1 3.8183 1.2530 -0.6365 18 6 4.5849 1.6344 -2.6149 19 6 5.1057 3.0338 -2.2759 20 6 3.9550 4.0382 -2.3726 21 7 2.8884 3.6540 -1.4393 22 6 2.3403 2.3334 -1.7740 23 1 -0.3633 -1.0229 -0.1001 24 1 -0.3634 0.4247 0.9357 25 1 -0.3634 0.5979 -0.8358 26 1 2.0001 -1.8966 3.4492 27 1 0.7214 -2.0115 -2.1819 28 1 2.3795 -2.6150 -1.9478 29 1 1.2563 -2.5411 -0.5688 30 1 5.3912 0.9092 -2.5052 31 1 4.2186 1.6207 -3.6415 32 1 5.5073 3.0370 -1.2627 33 1 5.8909 3.3102 -2.9796 34 1 4.3194 5.0335 -2.1180 35 1 3.5629 4.0444 -3.3897 36 1 2.1604 4.3522 -1.4151 37 1 1.9557 2.3477 -2.7938 38 1 1.5318 2.0904 -1.0844 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063093170.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:55 Heat of formation + Delta-G solvation = -61.298139 kcal Electronic energy + Delta-G solvation = -18652.935060 eV Core-core repulsion = 15915.055715 eV Total energy + Delta-G solvation = -2737.879345 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.42158 -38.77820 -37.54037 -34.66084 -33.14101 -32.30404 -31.64729 -28.13324 -26.76439 -24.72115 -24.57151 -22.94248 -21.00613 -19.87609 -19.59620 -18.20048 -17.43969 -16.67922 -16.37606 -15.66420 -15.47517 -15.19639 -14.94244 -14.80352 -14.42713 -14.11753 -13.92112 -13.72462 -13.52217 -13.20133 -13.13997 -12.80592 -12.41567 -12.35718 -12.00957 -11.73135 -11.64645 -11.52617 -11.37593 -11.17146 -10.75926 -10.41038 -9.60453 -9.41031 -8.68827 -6.37531 1.53122 1.59877 1.61059 1.74079 2.24126 2.52017 3.04334 3.22929 3.67315 3.76250 3.85518 4.12299 4.26464 4.32267 4.36002 4.48718 4.50969 4.61467 4.68668 4.72926 4.75185 4.77732 4.82253 4.90103 4.95443 5.07052 5.11660 5.21574 5.29882 5.41851 5.70140 5.86364 6.00728 6.03711 6.42785 6.54246 6.71078 7.20648 7.40336 8.61431 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.020832 B = 0.010602 C = 0.008187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.739220 B = 2640.389453 C = 3419.249258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.225 3.775 3 H 0.073 0.927 4 C -0.617 4.617 5 H 0.018 0.982 6 C -0.006 4.006 7 N -0.929 5.929 8 Si 1.071 2.929 9 H -0.272 1.272 10 H -0.288 1.288 11 H -0.230 1.230 12 N -0.594 5.594 13 C 0.096 3.904 14 C 0.509 3.491 15 O -0.594 6.594 16 C -0.103 4.103 17 H 0.089 0.911 18 C -0.096 4.096 19 C -0.115 4.115 20 C 0.057 3.943 21 N -0.694 5.694 22 C 0.068 3.932 23 H 0.047 0.953 24 H 0.058 0.942 25 H 0.057 0.943 26 H 0.254 0.746 27 H 0.063 0.937 28 H 0.052 0.948 29 H 0.065 0.935 30 H 0.053 0.947 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.091 0.909 34 H 0.099 0.901 35 H 0.037 0.963 36 H 0.360 0.640 37 H 0.038 0.962 38 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.109 11.351 -10.845 15.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.123 3.877 3 H 0.090 0.910 4 C -0.654 4.654 5 H 0.037 0.963 6 C -0.206 4.206 7 N -0.564 5.564 8 Si 0.891 3.109 9 H -0.198 1.198 10 H -0.214 1.214 11 H -0.153 1.153 12 N -0.324 5.324 13 C -0.047 4.047 14 C 0.297 3.703 15 O -0.476 6.476 16 C -0.124 4.124 17 H 0.107 0.893 18 C -0.134 4.134 19 C -0.153 4.153 20 C -0.072 4.072 21 N -0.327 5.327 22 C -0.061 4.061 23 H 0.066 0.934 24 H 0.077 0.923 25 H 0.076 0.924 26 H 0.063 0.937 27 H 0.081 0.919 28 H 0.071 0.929 29 H 0.084 0.916 30 H 0.072 0.928 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.109 0.891 34 H 0.117 0.883 35 H 0.055 0.945 36 H 0.180 0.820 37 H 0.056 0.944 38 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 0.171 11.983 -9.786 15.472 hybrid contribution -0.031 -2.199 -1.289 2.549 sum 0.140 9.784 -11.075 14.778 Atomic orbital electron populations 1.22336 0.96559 1.01288 1.00942 1.19532 0.92263 0.94219 0.81679 0.91008 1.22290 1.40282 1.09829 0.93050 0.96326 1.27055 0.92857 1.09174 0.91513 1.70938 1.46510 1.06284 1.32646 0.83780 0.78335 0.70934 0.77881 1.19793 1.21380 1.15275 1.48122 1.43813 1.15681 1.24743 1.21421 0.99308 0.83260 1.00694 1.21028 0.78184 0.88306 0.82744 1.90565 1.62127 1.68772 1.26151 1.21316 0.98052 0.90950 1.02118 0.89256 1.21363 0.95977 0.98017 0.98037 1.21634 0.98154 0.92844 1.02638 1.22030 0.91945 0.99351 0.93845 1.60162 1.15803 1.03248 1.53509 1.21926 0.95202 0.89266 0.99749 0.93385 0.92329 0.92409 0.93682 0.91853 0.92904 0.91595 0.92787 0.91944 0.91650 0.89054 0.88312 0.94517 0.82019 0.94425 0.89868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.84 8.55 71.98 0.62 -5.23 16 2 C 0.23 9.73 1.33 44.24 0.06 9.79 16 3 H 0.07 2.97 2.38 -2.38 -0.01 2.96 16 4 C -0.62 -32.90 8.38 25.60 0.21 -32.69 16 5 H 0.02 1.12 7.87 -2.91 -0.02 1.10 16 6 C -0.01 -0.32 5.25 84.66 0.44 0.12 16 7 N -0.93 -55.79 13.70 21.45 0.29 -55.49 16 8 Si 1.07 45.95 26.32 68.60 1.81 47.75 16 9 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 10 H -0.29 -12.49 7.11 99.48 0.71 -11.79 16 11 H -0.23 -8.20 5.86 99.48 0.58 -7.61 16 12 N -0.59 -25.01 2.75 -826.80 -2.28 -27.29 16 13 C 0.10 3.76 9.09 127.77 1.16 4.92 16 14 C 0.51 20.97 6.96 87.65 0.61 21.58 16 15 O -0.59 -26.77 15.66 -3.05 -0.05 -26.82 16 16 C -0.10 -3.58 1.83 -11.49 -0.02 -3.61 16 17 H 0.09 3.48 7.57 -2.39 -0.02 3.46 16 18 C -0.10 -2.88 4.69 30.67 0.14 -2.73 16 19 C -0.11 -2.62 6.09 30.65 0.19 -2.43 16 20 C 0.06 1.14 6.55 86.32 0.57 1.71 16 21 N -0.69 -16.67 6.85 -513.98 -3.52 -20.19 16 22 C 0.07 2.00 5.41 86.33 0.47 2.47 16 23 H 0.05 1.83 7.19 -2.38 -0.02 1.82 16 24 H 0.06 2.25 5.60 -2.39 -0.01 2.24 16 25 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 26 H 0.25 15.59 8.73 -92.71 -0.81 14.78 16 27 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 28 H 0.05 2.08 7.67 -2.39 -0.02 2.06 16 29 H 0.07 2.68 7.21 -2.38 -0.02 2.66 16 30 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.06 1.90 7.91 -2.38 -0.02 1.88 16 32 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.10 1.52 8.14 -2.38 -0.02 1.50 16 35 H 0.04 0.69 8.14 -2.38 -0.02 0.67 16 36 H 0.36 6.75 8.90 -89.70 -0.80 5.95 16 37 H 0.04 1.05 8.14 -2.39 -0.02 1.04 16 38 H 0.08 2.58 5.40 -2.38 -0.01 2.57 16 Total: -1.00 -65.45 291.02 0.79 -64.65 By element: Atomic # 1 Polarization: 23.40 SS G_CDS: 0.09 Total: 23.49 kcal Atomic # 6 Polarization: -10.56 SS G_CDS: 4.45 Total: -6.11 kcal Atomic # 7 Polarization: -97.47 SS G_CDS: -5.50 Total: -102.97 kcal Atomic # 8 Polarization: -26.77 SS G_CDS: -0.05 Total: -26.82 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 1.81 Total: 47.75 kcal Total: -65.45 0.79 -64.65 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063093170.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.355 kcal (2) G-P(sol) polarization free energy of solvation -65.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds