Wall clock time and date at job start Mon Mar 30 2020 03:15:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47277 * 2 1 4 4 C 1.50701 * 109.47046 * 120.00042 * 2 1 3 5 5 H 1.08007 * 120.00171 * 120.00184 * 4 2 1 6 6 C 1.37878 * 120.00079 * 299.99866 * 4 2 1 7 7 N 1.31509 * 119.99852 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 120.00188 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.46922 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.47405 * 119.99851 * 8 6 4 11 11 H 1.48500 * 109.47017 * 239.99933 * 8 6 4 12 12 N 1.46498 * 109.47138 * 239.99661 * 2 1 3 13 13 C 1.46506 * 120.00239 * 300.00351 * 12 2 1 14 14 C 1.34777 * 119.99828 * 119.72157 * 12 2 1 15 15 O 1.21283 * 120.00222 * 0.28168 * 14 12 2 16 16 C 1.50699 * 119.99772 * 180.27730 * 14 12 2 17 17 C 1.52998 * 109.47100 * 85.00607 * 16 14 12 18 18 N 1.46899 * 109.47427 * 324.99937 * 16 14 12 19 19 C 1.53008 * 109.46984 * 204.99926 * 16 14 12 20 20 C 1.52992 * 117.50178 * 253.62479 * 19 16 14 21 21 C 1.53001 * 117.49660 * 184.99870 * 19 16 14 22 22 H 1.08993 * 109.47037 * 60.00055 * 1 2 3 23 23 H 1.09007 * 109.47037 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47126 * 299.99981 * 1 2 3 25 25 H 0.97007 * 120.00297 * 179.97438 * 7 6 4 26 26 H 1.08999 * 109.46892 * 269.72399 * 13 12 2 27 27 H 1.09000 * 109.46803 * 29.71572 * 13 12 2 28 28 H 1.09000 * 109.47214 * 149.72366 * 13 12 2 29 29 H 1.08999 * 109.47409 * 59.99859 * 17 16 14 30 30 H 1.08998 * 109.46911 * 179.97438 * 17 16 14 31 31 H 1.09001 * 109.46820 * 299.99334 * 17 16 14 32 32 H 1.00906 * 111.00148 * 176.04399 * 18 16 14 33 33 H 1.00897 * 111.00228 * 300.00255 * 18 16 14 34 34 H 1.09002 * 115.54760 * 39.33653 * 19 16 14 35 35 H 1.08999 * 117.49793 * 0.02562 * 20 19 16 36 36 H 1.09003 * 117.50009 * 145.02387 * 20 19 16 37 37 H 1.09008 * 117.49494 * 214.97857 * 21 19 16 38 38 H 1.08997 * 117.49930 * 0.02562 * 21 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5886 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 0.9436 0.8302 2.6034 8 14 2.3225 -1.1195 4.0080 9 1 3.1473 -2.2863 3.6038 10 1 3.1473 -0.1858 4.8161 11 1 1.1677 -1.5865 4.8166 12 7 2.0183 -0.6907 -1.1961 13 6 1.6644 -2.0933 -1.4280 14 6 2.7885 -0.0341 -2.0861 15 8 3.0816 1.1271 -1.8943 16 6 3.2857 -0.7427 -3.3197 17 6 2.2180 -0.6726 -4.4133 18 7 3.5653 -2.1485 -2.9977 19 6 4.5670 -0.0681 -3.8139 20 6 4.4710 0.7924 -5.0753 21 6 5.1670 -0.5691 -5.1291 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 0.7089 1.1614 3.4844 26 1 2.4182 -2.7377 -0.9758 27 1 0.6926 -2.3015 -0.9803 28 1 1.6190 -2.2841 -2.5002 29 1 2.0106 0.3705 -4.6523 30 1 2.5778 -1.1848 -5.3056 31 1 1.3053 -1.1532 -4.0613 32 1 3.8387 -2.6610 -3.8228 33 1 4.2680 -2.2216 -2.2773 34 1 5.2587 0.2544 -3.0357 35 1 3.4950 0.8783 -5.5528 36 1 5.0996 1.6814 -5.1271 37 1 6.2536 -0.5757 -5.2163 38 1 4.6488 -1.3790 -5.6425 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063093298.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:56 Heat of formation + Delta-G solvation = 4.367799 kcal Electronic energy + Delta-G solvation = -18404.778255 eV Core-core repulsion = 15669.746399 eV Total energy + Delta-G solvation = -2735.031856 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.95813 -37.44436 -35.17637 -33.88804 -32.32160 -29.15132 -28.84144 -25.94638 -25.15419 -24.54350 -22.32890 -21.84651 -19.42853 -17.97654 -16.52357 -16.40113 -16.03231 -15.47551 -14.96397 -14.54523 -14.03286 -13.71503 -13.26362 -12.71445 -12.48199 -12.20393 -12.06610 -11.86395 -11.54657 -11.44137 -11.15261 -11.01856 -10.97256 -10.71893 -10.62797 -10.36878 -10.18808 -10.15455 -10.09196 -9.07470 -8.88586 -8.38491 -8.24699 -7.38194 -6.00863 -4.08033 3.29392 3.36612 3.39566 3.45592 3.73658 4.14579 4.44727 4.57346 4.78513 4.91953 5.01853 5.09357 5.30087 5.38811 5.55825 5.58293 5.81439 5.86562 5.91980 6.10280 6.15518 6.28169 6.35507 6.53585 6.75834 6.86875 6.95200 7.07166 7.16149 7.45999 7.60082 7.64334 7.81180 8.10596 8.29024 8.70944 8.92062 9.20428 9.58596 11.04452 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.036286 B = 0.006587 C = 0.006489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.464088 B = 4249.705623 C = 4313.921921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.254 3.746 3 H 0.060 0.940 4 C -0.519 4.519 5 H 0.060 0.940 6 C 0.062 3.938 7 N -0.890 5.890 8 Si 0.898 3.102 9 H -0.274 1.274 10 H -0.284 1.284 11 H -0.284 1.284 12 N -0.579 5.579 13 C 0.101 3.899 14 C 0.513 3.487 15 O -0.556 6.556 16 C 0.130 3.870 17 C -0.139 4.139 18 N -0.821 5.821 19 C -0.161 4.161 20 C -0.169 4.169 21 C -0.183 4.183 22 H 0.010 0.990 23 H 0.031 0.969 24 H 0.092 0.908 25 H 0.261 0.739 26 H 0.045 0.955 27 H 0.047 0.953 28 H 0.080 0.920 29 H 0.068 0.932 30 H 0.061 0.939 31 H 0.070 0.930 32 H 0.336 0.664 33 H 0.347 0.653 34 H 0.106 0.894 35 H 0.100 0.900 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.980 -6.076 -13.786 15.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.154 3.846 3 H 0.077 0.923 4 C -0.558 4.558 5 H 0.078 0.922 6 C -0.140 4.140 7 N -0.528 5.528 8 Si 0.726 3.274 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.210 1.210 12 N -0.308 5.308 13 C -0.042 4.042 14 C 0.298 3.702 15 O -0.435 6.435 16 C 0.034 3.966 17 C -0.197 4.197 18 N -0.351 5.351 19 C -0.182 4.182 20 C -0.207 4.207 21 C -0.220 4.220 22 H 0.029 0.971 23 H 0.050 0.950 24 H 0.110 0.890 25 H 0.071 0.929 26 H 0.064 0.936 27 H 0.066 0.934 28 H 0.099 0.901 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.089 0.911 32 H 0.149 0.851 33 H 0.161 0.839 34 H 0.124 0.876 35 H 0.118 0.882 36 H 0.109 0.891 37 H 0.110 0.890 38 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 3.245 -5.405 -13.262 14.685 hybrid contribution 1.341 -0.300 0.665 1.527 sum 4.586 -5.705 -12.597 14.569 Atomic orbital electron populations 1.22080 0.98370 0.99365 1.00643 1.18929 0.90820 0.94455 0.80399 0.92251 1.21375 1.31390 1.12748 0.90259 0.92222 1.24906 0.95091 0.95022 0.98953 1.69897 1.36711 1.22753 1.23487 0.86451 0.78577 0.79565 0.82853 1.19840 1.21027 1.20983 1.48147 1.48114 1.12173 1.22377 1.21767 0.99093 0.81978 1.01396 1.19998 0.79702 0.86737 0.83754 1.90647 1.59098 1.17261 1.76517 1.20473 0.93402 0.88079 0.94676 1.21910 0.98352 1.02612 0.96802 1.59669 1.51551 1.09617 1.14311 1.22842 0.99602 1.04008 0.91749 1.23006 1.02367 0.94107 1.01202 1.22960 0.99863 0.98286 1.00927 0.97125 0.95043 0.88966 0.92861 0.93639 0.93404 0.90138 0.91326 0.92016 0.91147 0.85065 0.83917 0.87568 0.88186 0.89060 0.89043 0.88945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.63 8.95 37.16 0.33 -3.29 16 2 C 0.25 6.72 2.64 -69.08 -0.18 6.54 16 3 H 0.06 1.82 6.90 -51.93 -0.36 1.46 16 4 C -0.52 -14.41 8.37 -34.44 -0.29 -14.70 16 5 H 0.06 1.64 7.65 -52.48 -0.40 1.24 16 6 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 7 N -0.89 -25.78 11.32 55.43 0.63 -25.15 16 8 Si 0.90 21.48 29.54 -169.99 -5.02 16.46 16 9 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 10 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 12 N -0.58 -12.71 2.75 -175.26 -0.48 -13.19 16 13 C 0.10 1.83 8.21 59.85 0.49 2.32 16 14 C 0.51 10.83 6.59 -10.99 -0.07 10.76 16 15 O -0.56 -14.08 15.56 5.55 0.09 -13.99 16 16 C 0.13 1.93 0.64 -132.75 -0.08 1.85 16 17 C -0.14 -1.79 7.19 37.16 0.27 -1.52 16 18 N -0.82 -10.14 5.10 -0.19 0.00 -10.15 16 19 C -0.16 -2.26 4.69 -90.62 -0.43 -2.69 16 20 C -0.17 -2.07 9.65 -26.73 -0.26 -2.33 16 21 C -0.18 -1.90 9.56 -26.73 -0.26 -2.16 16 22 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 23 H 0.03 0.72 6.66 -51.92 -0.35 0.38 16 24 H 0.09 2.50 6.07 -51.93 -0.32 2.18 16 25 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 26 H 0.04 0.81 7.75 -51.93 -0.40 0.41 16 27 H 0.05 0.89 6.43 -51.93 -0.33 0.56 16 28 H 0.08 1.23 4.45 -51.93 -0.23 1.00 16 29 H 0.07 0.93 6.74 -51.93 -0.35 0.58 16 30 H 0.06 0.62 6.96 -51.93 -0.36 0.26 16 31 H 0.07 0.93 6.84 -51.93 -0.36 0.58 16 32 H 0.34 3.22 8.58 -39.29 -0.34 2.88 16 33 H 0.35 4.53 8.92 -39.29 -0.35 4.18 16 34 H 0.11 1.72 8.09 -51.93 -0.42 1.30 16 35 H 0.10 1.16 5.89 -51.93 -0.31 0.86 16 36 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.09 0.87 8.14 -51.92 -0.42 0.45 16 38 H 0.09 0.82 7.18 -51.93 -0.37 0.45 16 LS Contribution 295.22 15.07 4.45 4.45 Total: -1.00 -31.27 295.22 -6.56 -37.83 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: -5.64 Total: 7.33 kcal Atomic # 6 Polarization: -3.02 SS G_CDS: -0.57 Total: -3.59 kcal Atomic # 7 Polarization: -48.63 SS G_CDS: 0.14 Total: -48.49 kcal Atomic # 8 Polarization: -14.08 SS G_CDS: 0.09 Total: -13.99 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -31.27 -6.56 -37.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063093298.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.195 kcal (2) G-P(sol) polarization free energy of solvation -31.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.827 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds