Wall clock time and date at job start Mon Mar 30 2020 03:15:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47277 * 2 1 4 4 C 1.50701 * 109.47046 * 120.00042 * 2 1 3 5 5 H 1.08007 * 120.00171 * 120.00184 * 4 2 1 6 6 C 1.37878 * 120.00079 * 299.99866 * 4 2 1 7 7 N 1.31509 * 119.99852 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 120.00188 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.46922 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.47405 * 119.99851 * 8 6 4 11 11 H 1.48500 * 109.47017 * 239.99933 * 8 6 4 12 12 N 1.46498 * 109.47138 * 239.99661 * 2 1 3 13 13 C 1.46506 * 120.00239 * 300.00351 * 12 2 1 14 14 C 1.34777 * 119.99828 * 119.72157 * 12 2 1 15 15 O 1.21283 * 120.00222 * 0.28168 * 14 12 2 16 16 C 1.50699 * 119.99772 * 180.27730 * 14 12 2 17 17 C 1.52998 * 109.47100 * 85.00607 * 16 14 12 18 18 N 1.46899 * 109.47427 * 324.99937 * 16 14 12 19 19 C 1.53008 * 109.46984 * 204.99926 * 16 14 12 20 20 C 1.52992 * 117.50178 * 253.62479 * 19 16 14 21 21 C 1.53001 * 117.49660 * 184.99870 * 19 16 14 22 22 H 1.08993 * 109.47037 * 60.00055 * 1 2 3 23 23 H 1.09007 * 109.47037 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47126 * 299.99981 * 1 2 3 25 25 H 0.97007 * 120.00297 * 179.97438 * 7 6 4 26 26 H 1.08999 * 109.46892 * 269.72399 * 13 12 2 27 27 H 1.09000 * 109.46803 * 29.71572 * 13 12 2 28 28 H 1.09000 * 109.47214 * 149.72366 * 13 12 2 29 29 H 1.08999 * 109.47409 * 59.99859 * 17 16 14 30 30 H 1.08998 * 109.46911 * 179.97438 * 17 16 14 31 31 H 1.09001 * 109.46820 * 299.99334 * 17 16 14 32 32 H 1.00906 * 111.00148 * 176.04399 * 18 16 14 33 33 H 1.00897 * 111.00228 * 300.00255 * 18 16 14 34 34 H 1.09002 * 115.54760 * 39.33653 * 19 16 14 35 35 H 1.08999 * 117.49793 * 0.02562 * 20 19 16 36 36 H 1.09003 * 117.50009 * 145.02387 * 20 19 16 37 37 H 1.09008 * 117.49494 * 214.97857 * 21 19 16 38 38 H 1.08997 * 117.49930 * 0.02562 * 21 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5886 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 0.9436 0.8302 2.6034 8 14 2.3225 -1.1195 4.0080 9 1 3.1473 -2.2863 3.6038 10 1 3.1473 -0.1858 4.8161 11 1 1.1677 -1.5865 4.8166 12 7 2.0183 -0.6907 -1.1961 13 6 1.6644 -2.0933 -1.4280 14 6 2.7885 -0.0341 -2.0861 15 8 3.0816 1.1271 -1.8943 16 6 3.2857 -0.7427 -3.3197 17 6 2.2180 -0.6726 -4.4133 18 7 3.5653 -2.1485 -2.9977 19 6 4.5670 -0.0681 -3.8139 20 6 4.4710 0.7924 -5.0753 21 6 5.1670 -0.5691 -5.1291 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 0.7089 1.1614 3.4844 26 1 2.4182 -2.7377 -0.9758 27 1 0.6926 -2.3015 -0.9803 28 1 1.6190 -2.2841 -2.5002 29 1 2.0106 0.3705 -4.6523 30 1 2.5778 -1.1848 -5.3056 31 1 1.3053 -1.1532 -4.0613 32 1 3.8387 -2.6610 -3.8228 33 1 4.2680 -2.2216 -2.2773 34 1 5.2587 0.2544 -3.0357 35 1 3.4950 0.8783 -5.5528 36 1 5.0996 1.6814 -5.1271 37 1 6.2536 -0.5757 -5.2163 38 1 4.6488 -1.3790 -5.6425 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063093298.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:56 Heat of formation + Delta-G solvation = -17.510750 kcal Electronic energy + Delta-G solvation = -18405.726980 eV Core-core repulsion = 15669.746399 eV Total energy + Delta-G solvation = -2735.980581 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.38584 -38.80429 -37.03857 -35.31124 -34.08622 -31.04735 -29.93742 -27.51373 -27.27843 -25.81365 -23.52352 -23.18432 -21.02056 -19.39384 -18.43263 -17.81198 -17.56885 -16.87846 -16.60786 -16.05628 -15.40969 -15.25004 -14.62643 -14.48853 -14.11681 -13.59601 -13.40593 -13.23408 -13.04802 -12.95425 -12.83496 -12.66648 -12.59723 -12.27411 -12.15151 -12.09785 -12.05818 -11.37962 -11.20735 -11.13026 -10.60589 -10.42375 -9.40662 -9.19885 -8.14103 -6.30798 1.39861 1.40844 1.52974 1.82684 2.34124 2.51157 2.91541 3.13124 3.48324 3.69666 3.73830 4.01952 4.04974 4.30737 4.52798 4.65303 4.71725 4.81502 4.85818 4.88972 4.90455 4.97773 5.02076 5.11314 5.16982 5.24878 5.27672 5.41763 5.47254 5.64895 5.75395 5.99083 6.10579 6.18545 6.60356 6.77956 6.96890 7.34262 7.55799 8.90346 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.036286 B = 0.006587 C = 0.006489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.464088 B = 4249.705623 C = 4313.921921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.257 3.743 3 H 0.003 0.997 4 C -0.533 4.533 5 H 0.059 0.941 6 C 0.011 3.989 7 N -0.920 5.920 8 Si 0.967 3.033 9 H -0.265 1.265 10 H -0.285 1.285 11 H -0.273 1.273 12 N -0.585 5.585 13 C 0.105 3.895 14 C 0.499 3.501 15 O -0.611 6.611 16 C 0.147 3.853 17 C -0.136 4.136 18 N -0.815 5.815 19 C -0.192 4.192 20 C -0.179 4.179 21 C -0.141 4.141 22 H 0.018 0.982 23 H 0.047 0.953 24 H 0.066 0.934 25 H 0.264 0.736 26 H 0.049 0.951 27 H 0.040 0.960 28 H 0.114 0.886 29 H 0.056 0.944 30 H 0.101 0.899 31 H 0.068 0.932 32 H 0.359 0.641 33 H 0.345 0.655 34 H 0.072 0.928 35 H 0.108 0.892 36 H 0.086 0.914 37 H 0.104 0.896 38 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.507 -8.729 -15.492 18.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.154 3.846 3 H 0.021 0.979 4 C -0.572 4.572 5 H 0.078 0.922 6 C -0.188 4.188 7 N -0.559 5.559 8 Si 0.792 3.208 9 H -0.189 1.189 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.314 5.314 13 C -0.037 4.037 14 C 0.287 3.713 15 O -0.493 6.493 16 C 0.051 3.949 17 C -0.194 4.194 18 N -0.348 5.348 19 C -0.212 4.212 20 C -0.217 4.217 21 C -0.178 4.178 22 H 0.037 0.963 23 H 0.066 0.934 24 H 0.085 0.915 25 H 0.073 0.927 26 H 0.068 0.932 27 H 0.059 0.941 28 H 0.132 0.868 29 H 0.075 0.925 30 H 0.120 0.880 31 H 0.087 0.913 32 H 0.175 0.825 33 H 0.158 0.842 34 H 0.090 0.910 35 H 0.126 0.874 36 H 0.105 0.895 37 H 0.122 0.878 38 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 3.772 -8.108 -15.009 17.471 hybrid contribution 1.202 0.585 1.178 1.782 sum 4.974 -7.523 -13.831 16.512 Atomic orbital electron populations 1.21863 0.97337 1.00010 0.99775 1.18537 0.91586 0.92066 0.82368 0.97888 1.21603 1.31628 1.12823 0.91152 0.92241 1.25782 0.95161 0.95692 1.02134 1.70040 1.37572 1.24032 1.24303 0.85375 0.78241 0.78449 0.78750 1.18865 1.21133 1.19877 1.48168 1.48350 1.13577 1.21295 1.21974 0.98666 0.79518 1.03551 1.21229 0.78516 0.86437 0.85098 1.90608 1.60719 1.19977 1.77997 1.20203 0.94310 0.88717 0.91671 1.21932 0.97544 1.02550 0.97330 1.59516 1.51753 1.08066 1.15420 1.22681 0.99269 1.06856 0.92443 1.23123 1.03262 0.95274 1.00018 1.23077 1.00737 0.97448 0.96554 0.96275 0.93439 0.91490 0.92694 0.93222 0.94119 0.86801 0.92458 0.88031 0.91298 0.82451 0.84235 0.90989 0.87356 0.89534 0.87778 0.86113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.68 8.95 71.98 0.64 -6.04 16 2 C 0.26 14.09 2.64 44.25 0.12 14.20 16 3 H 0.00 0.21 6.90 -2.39 -0.02 0.19 16 4 C -0.53 -30.24 8.37 25.60 0.21 -30.03 16 5 H 0.06 3.29 7.65 -2.91 -0.02 3.27 16 6 C 0.01 0.64 5.30 84.66 0.45 1.09 16 7 N -0.92 -54.81 11.32 21.45 0.24 -54.57 16 8 Si 0.97 44.32 29.54 68.60 2.03 46.34 16 9 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 10 H -0.29 -13.05 7.11 99.48 0.71 -12.35 16 11 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 12 N -0.59 -26.06 2.75 -826.79 -2.28 -28.34 16 13 C 0.10 3.64 8.21 127.77 1.05 4.69 16 14 C 0.50 21.54 6.59 87.66 0.58 22.12 16 15 O -0.61 -32.71 15.56 -3.04 -0.05 -32.76 16 16 C 0.15 4.16 0.64 2.78 0.00 4.16 16 17 C -0.14 -3.10 7.19 71.98 0.52 -2.58 16 18 N -0.81 -17.80 5.10 -154.52 -0.79 -18.59 16 19 C -0.19 -5.17 4.69 -10.79 -0.05 -5.23 16 20 C -0.18 -4.08 9.65 30.59 0.30 -3.78 16 21 C -0.14 -2.40 9.56 30.60 0.29 -2.11 16 22 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 23 H 0.05 2.20 6.66 -2.38 -0.02 2.19 16 24 H 0.07 3.75 6.07 -2.39 -0.01 3.73 16 25 H 0.26 14.80 8.31 -92.70 -0.77 14.03 16 26 H 0.05 1.68 7.75 -2.39 -0.02 1.66 16 27 H 0.04 1.46 6.43 -2.39 -0.02 1.44 16 28 H 0.11 3.16 4.45 -2.39 -0.01 3.15 16 29 H 0.06 1.45 6.74 -2.39 -0.02 1.44 16 30 H 0.10 1.52 6.96 -2.39 -0.02 1.50 16 31 H 0.07 1.60 6.84 -2.39 -0.02 1.59 16 32 H 0.36 5.20 8.58 -89.69 -0.77 4.43 16 33 H 0.34 8.30 8.92 -89.70 -0.80 7.50 16 34 H 0.07 2.43 8.09 -2.39 -0.02 2.41 16 35 H 0.11 2.27 5.89 -2.39 -0.01 2.26 16 36 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 37 H 0.10 1.57 8.14 -2.38 -0.02 1.55 16 38 H 0.12 1.42 7.18 -2.39 -0.02 1.40 16 Total: -1.00 -72.17 295.22 2.77 -69.39 By element: Atomic # 1 Polarization: 22.51 SS G_CDS: -0.49 Total: 22.01 kcal Atomic # 6 Polarization: -7.60 SS G_CDS: 4.11 Total: -3.49 kcal Atomic # 7 Polarization: -98.68 SS G_CDS: -2.82 Total: -101.50 kcal Atomic # 8 Polarization: -32.71 SS G_CDS: -0.05 Total: -32.76 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.34 kcal Total: -72.17 2.77 -69.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063093298.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.883 kcal (2) G-P(sol) polarization free energy of solvation -72.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds