Wall clock time and date at job start Mon Mar 30 2020 03:15:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.47630 * 2 1 4 4 C 1.50701 * 109.47048 * 240.00084 * 2 1 3 5 5 H 1.08007 * 119.99727 * 239.99987 * 4 2 1 6 6 C 1.37873 * 120.00403 * 60.00187 * 4 2 1 7 7 N 1.31516 * 119.99575 * 359.97438 * 6 4 2 8 8 Si 1.86795 * 120.00319 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47327 * 59.99709 * 8 6 4 10 10 H 1.48500 * 109.47289 * 179.97438 * 8 6 4 11 11 H 1.48505 * 109.47109 * 299.99599 * 8 6 4 12 12 N 1.46497 * 109.47130 * 119.99945 * 2 1 3 13 13 C 1.46507 * 119.99915 * 60.00128 * 12 2 1 14 14 C 1.34777 * 120.00126 * 239.99643 * 12 2 1 15 15 O 1.21277 * 119.99735 * 0.02562 * 14 12 2 16 16 C 1.50698 * 120.00094 * 179.97438 * 14 12 2 17 17 C 1.52997 * 109.47440 * 85.00283 * 16 14 12 18 18 N 1.46907 * 109.47270 * 325.00253 * 16 14 12 19 19 C 1.53003 * 109.47204 * 205.00510 * 16 14 12 20 20 C 1.53001 * 117.51964 * 111.28411 * 19 16 14 21 21 C 1.52999 * 60.00190 * 107.47982 * 20 19 16 22 22 H 1.09002 * 109.46984 * 59.99947 * 1 2 3 23 23 H 1.09003 * 109.47180 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47098 * 300.00229 * 1 2 3 25 25 H 0.97003 * 119.99462 * 180.02562 * 7 6 4 26 26 H 1.08998 * 109.46987 * 269.99610 * 13 12 2 27 27 H 1.08993 * 109.46784 * 29.99844 * 13 12 2 28 28 H 1.09001 * 109.46878 * 150.00443 * 13 12 2 29 29 H 1.08996 * 109.47501 * 179.97438 * 17 16 14 30 30 H 1.09004 * 109.47169 * 300.00441 * 17 16 14 31 31 H 1.09005 * 109.46926 * 59.99570 * 17 16 14 32 32 H 1.00894 * 111.00000 * 176.04317 * 18 16 14 33 33 H 1.00901 * 111.00027 * 300.00437 * 18 16 14 34 34 H 1.09002 * 115.54973 * 325.58194 * 19 16 14 35 35 H 1.09001 * 117.49733 * 214.97413 * 20 19 16 36 36 H 1.08995 * 117.49577 * 359.97438 * 20 19 16 37 37 H 1.09004 * 117.50150 * 252.51496 * 21 20 19 38 38 H 1.09004 * 117.49681 * 107.48417 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6993 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3213 -1.1204 -4.0079 9 1 1.8258 -2.5203 -4.0077 10 1 1.8260 -0.4206 -5.2204 11 1 3.8064 -1.1209 -4.0082 12 7 2.0183 -0.6906 1.1962 13 6 1.6644 -2.0932 1.4280 14 6 2.7932 -0.0356 2.0833 15 8 3.0858 1.1256 1.8915 16 6 3.2950 -0.7458 3.3140 17 6 4.5789 -1.5064 2.9762 18 7 2.2744 -1.6924 3.7836 19 6 3.5836 0.2794 4.4125 20 6 2.6705 0.2761 5.6401 21 6 4.1038 -0.2474 5.7515 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 0.7082 1.1608 -3.4844 26 1 0.7375 -2.1444 1.9993 27 1 1.5295 -2.5968 0.4708 28 1 2.4628 -2.5819 1.9864 29 1 4.9421 -2.0197 3.8665 30 1 4.3733 -2.2367 2.1936 31 1 5.3362 -0.8040 2.6277 32 1 2.6119 -2.2275 4.5696 33 1 1.4161 -1.2142 4.0134 34 1 3.9620 1.2423 4.0692 35 1 2.4480 1.2369 6.1044 36 1 1.8636 -0.4562 5.6652 37 1 4.2401 -1.3244 5.8499 38 1 4.8243 0.3690 6.2891 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063093301.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:59 Heat of formation + Delta-G solvation = 4.582684 kcal Electronic energy + Delta-G solvation = -18417.914651 eV Core-core repulsion = 15682.892113 eV Total energy + Delta-G solvation = -2735.022538 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.99699 -37.50112 -35.19700 -33.74317 -32.29585 -29.24378 -29.02953 -25.88107 -25.16207 -24.41292 -22.37052 -21.86766 -19.47510 -17.99718 -16.51652 -16.36116 -16.12299 -15.57158 -14.92520 -14.34646 -14.27375 -13.74086 -13.17674 -12.89855 -12.32937 -12.23215 -11.93885 -11.71398 -11.61581 -11.48853 -11.35576 -11.12470 -10.96272 -10.76917 -10.65844 -10.35936 -10.18061 -10.08475 -10.07721 -9.11681 -8.93532 -8.39403 -8.26166 -7.39597 -6.00663 -4.08091 3.32012 3.36555 3.37776 3.43151 3.74852 4.07212 4.43998 4.50318 4.74334 4.88631 4.93128 5.15219 5.30171 5.46242 5.51983 5.56321 5.75030 5.88239 5.96585 5.99406 6.21822 6.28934 6.42824 6.50824 6.78642 6.85510 6.94659 7.03930 7.16615 7.38232 7.58956 7.63928 7.80865 8.10704 8.29160 8.70179 8.91003 9.19412 9.58240 11.04561 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.039674 B = 0.006547 C = 0.006373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.581004 B = 4275.642454 C = 4392.410950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.255 3.745 3 H 0.059 0.941 4 C -0.522 4.522 5 H 0.059 0.941 6 C 0.063 3.937 7 N -0.889 5.889 8 Si 0.898 3.102 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.277 1.277 12 N -0.578 5.578 13 C 0.098 3.902 14 C 0.515 3.485 15 O -0.559 6.559 16 C 0.130 3.870 17 C -0.132 4.132 18 N -0.824 5.824 19 C -0.163 4.163 20 C -0.186 4.186 21 C -0.178 4.178 22 H 0.091 0.909 23 H 0.030 0.970 24 H 0.009 0.991 25 H 0.263 0.737 26 H 0.038 0.962 27 H 0.056 0.944 28 H 0.082 0.918 29 H 0.060 0.940 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.337 0.663 33 H 0.346 0.654 34 H 0.119 0.881 35 H 0.094 0.906 36 H 0.093 0.907 37 H 0.092 0.908 38 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.932 -6.031 14.123 15.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.155 3.845 3 H 0.077 0.923 4 C -0.561 4.561 5 H 0.077 0.923 6 C -0.139 4.139 7 N -0.528 5.528 8 Si 0.726 3.274 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.203 1.203 12 N -0.307 5.307 13 C -0.046 4.046 14 C 0.300 3.700 15 O -0.438 6.438 16 C 0.034 3.966 17 C -0.189 4.189 18 N -0.357 5.357 19 C -0.183 4.183 20 C -0.224 4.224 21 C -0.215 4.215 22 H 0.110 0.890 23 H 0.049 0.951 24 H 0.028 0.972 25 H 0.073 0.927 26 H 0.057 0.943 27 H 0.074 0.926 28 H 0.100 0.900 29 H 0.079 0.921 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.151 0.849 33 H 0.161 0.839 34 H 0.137 0.863 35 H 0.112 0.888 36 H 0.111 0.889 37 H 0.111 0.889 38 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 3.018 -5.643 13.096 14.576 hybrid contribution 0.246 0.061 0.063 0.261 sum 3.263 -5.582 13.159 14.662 Atomic orbital electron populations 1.22051 0.98287 0.99356 1.00522 1.18917 0.90841 0.94440 0.80314 0.92276 1.21300 1.31601 1.12849 0.90327 0.92311 1.24896 0.95038 0.95013 0.98927 1.69881 1.36483 1.22710 1.23716 0.86561 0.79195 0.79593 0.82048 1.20247 1.21233 1.20298 1.48133 1.47612 1.12323 1.22612 1.21799 1.00458 0.82309 1.00002 1.19970 0.79422 0.86476 0.84107 1.90628 1.58898 1.17111 1.77211 1.20459 0.93187 0.90470 0.92498 1.21741 0.94969 1.00241 1.01993 1.59612 1.06591 1.27980 1.41536 1.23029 1.04236 1.02209 0.88841 1.23056 0.93667 1.03089 1.02549 1.22934 0.96985 1.00952 1.00614 0.89033 0.95135 0.97237 0.92737 0.94292 0.92560 0.89980 0.92110 0.91042 0.91530 0.84950 0.83935 0.86253 0.88777 0.88911 0.88932 0.88846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.56 8.97 37.16 0.33 -3.23 16 2 C 0.26 6.74 2.64 -69.09 -0.18 6.55 16 3 H 0.06 1.81 6.90 -51.93 -0.36 1.45 16 4 C -0.52 -14.48 7.99 -34.44 -0.28 -14.76 16 5 H 0.06 1.61 7.33 -52.48 -0.38 1.22 16 6 C 0.06 1.76 5.30 -17.82 -0.09 1.67 16 7 N -0.89 -25.72 11.32 55.43 0.63 -25.09 16 8 Si 0.90 21.44 29.54 -169.99 -5.02 16.42 16 9 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 10 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 12 N -0.58 -12.68 2.75 -175.27 -0.48 -13.16 16 13 C 0.10 1.77 7.97 59.85 0.48 2.25 16 14 C 0.52 10.88 6.59 -10.99 -0.07 10.80 16 15 O -0.56 -14.12 15.13 5.56 0.08 -14.04 16 16 C 0.13 1.94 0.64 -132.75 -0.08 1.86 16 17 C -0.13 -1.79 8.37 37.16 0.31 -1.48 16 18 N -0.82 -9.82 4.39 -0.19 0.00 -9.82 16 19 C -0.16 -2.24 4.96 -90.61 -0.45 -2.69 16 20 C -0.19 -2.06 9.62 -26.73 -0.26 -2.32 16 21 C -0.18 -1.81 9.42 -26.73 -0.25 -2.07 16 22 H 0.09 2.48 6.07 -51.93 -0.32 2.16 16 23 H 0.03 0.70 7.67 -51.93 -0.40 0.30 16 24 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 25 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 26 H 0.04 0.64 7.75 -51.93 -0.40 0.24 16 27 H 0.06 1.10 7.02 -51.93 -0.36 0.74 16 28 H 0.08 1.29 4.45 -51.93 -0.23 1.06 16 29 H 0.06 0.65 7.29 -51.93 -0.38 0.27 16 30 H 0.07 1.02 6.84 -51.93 -0.36 0.67 16 31 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 32 H 0.34 3.13 7.92 -39.29 -0.31 2.81 16 33 H 0.35 4.18 7.43 -39.29 -0.29 3.89 16 34 H 0.12 1.97 7.33 -51.93 -0.38 1.59 16 35 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.09 0.91 6.15 -51.93 -0.32 0.59 16 37 H 0.09 0.81 7.20 -51.93 -0.37 0.44 16 38 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 LS Contribution 295.15 15.07 4.45 4.45 Total: -1.00 -31.01 295.15 -6.58 -37.59 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: -5.69 Total: 7.08 kcal Atomic # 6 Polarization: -2.87 SS G_CDS: -0.55 Total: -3.42 kcal Atomic # 7 Polarization: -48.22 SS G_CDS: 0.14 Total: -48.08 kcal Atomic # 8 Polarization: -14.12 SS G_CDS: 0.08 Total: -14.04 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -31.01 -6.58 -37.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063093301.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.171 kcal (2) G-P(sol) polarization free energy of solvation -31.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.588 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds